Stachys affinis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_062803.1 · 1–75 bp · −
psbA · NC_062803.1 · 225–1,283 bp · −
trnK-UUU · NC_062803.1 · 1,518–4,098 bp · −
matK · NC_062803.1 · 1,817–3,346 bp · −
rps16 · NC_062803.1 · 4,653–5,793 bp · −
trnQ-UUG · NC_062803.1 · 6,541–6,612 bp · −
trnS-GCU · NC_062803.1 · 7,742–7,829 bp · −
atpA · NC_062803.1 · 9,579–11,102 bp · −
atpF · NC_062803.1 · 11,190–12,401 bp · −
atpH · NC_062803.1 · 12,768–13,013 bp · −
atpI · NC_062803.1 · 13,969–14,712 bp · −
rps2 · NC_062803.1 · 14,943–15,653 bp · −
rpoC2 · NC_062803.1 · 15,984–20,072 bp · −
rpoC1 · NC_062803.1 · 20,227–23,063 bp · −
rpoB · NC_062803.1 · 23,090–26,302 bp · −
psbM · NC_062803.1 · 28,907–29,011 bp · −
trnD-GUC · NC_062803.1 · 29,530–29,603 bp · −
trnY-GUA · NC_062803.1 · 29,719–29,802 bp · −
trnE-UUC · NC_062803.1 · 29,862–29,934 bp · −
trnS-UGA · NC_062803.1 · 34,187–34,279 bp · −
trnfM-CAU · NC_062803.1 · 35,239–35,312 bp · −
rps14 · NC_062803.1 · 35,462–35,764 bp · −
psaB · NC_062803.1 · 35,900–38,104 bp · −
psaA · NC_062803.1 · 38,130–40,382 bp · −
ycf3 · NC_062803.1 · 41,132–43,074 bp · −
rps4 · NC_062803.1 · 43,704–44,309 bp · −
trnT-UGU · NC_062803.1 · 44,695–44,767 bp · −
ndhJ · NC_062803.1 · 47,060–47,536 bp · −
ndhK · NC_062803.1 · 47,637–48,314 bp · −
ndhC · NC_062803.1 · 48,368–48,730 bp · −
trnV-UAC · NC_062803.1 · 49,668–50,320 bp · −
atpE · NC_062803.1 · 50,795–51,196 bp · −
atpB · NC_062803.1 · 51,193–52,689 bp · −
psbJ · NC_062803.1 · 61,718–61,840 bp · −
psbL · NC_062803.1 · 61,978–62,094 bp · −
psbF · NC_062803.1 · 62,118–62,237 bp · −
psbE · NC_062803.1 · 62,252–62,503 bp · −
trnW-CCA · NC_062803.1 · 63,914–63,987 bp · −
trnP-UGG · NC_062803.1 · 64,157–64,230 bp · −
rpl20 · NC_062803.1 · 65,986–66,372 bp · −
rps12 · NC_062803.1 · 67,106–67,219 bp · −
rps12 · NC_062803.1 · 94,429–95,222 bp · −
clpP · NC_062803.1 · 67,345–69,200 bp · −
psbN · NC_062803.1 · 71,533–71,664 bp · −
rpoA · NC_062803.1 · 75,053–76,066 bp · −
rps11 · NC_062803.1 · 76,138–76,554 bp · −
rpl36 · NC_062803.1 · 76,657–76,770 bp · −
infA · NC_062803.1 · 76,866–77,099 bp · −
rps8 · NC_062803.1 · 77,223–77,636 bp · −
rpl14 · NC_062803.1 · 77,804–78,172 bp · −
rpl16 · NC_062803.1 · 78,299–79,592 bp · −
rps3 · NC_062803.1 · 79,746–80,408 bp · −
rpl22 · NC_062803.1 · 80,393–80,857 bp · −
rps19 · NC_062803.1 · 80,921–81,199 bp · −
rpl2 · NC_062803.1 · 81,251–82,742 bp · −
rpl23 · NC_062803.1 · 82,761–83,042 bp · −
trnI-CAU · NC_062803.1 · 83,216–83,289 bp · −
trnL-CAA · NC_062803.1 · 90,796–90,876 bp · −
ndhB · NC_062803.1 · 91,422–93,633 bp · −
rps7 · NC_062803.1 · 93,908–94,375 bp · −
trnN-GUU · NC_062803.1 · 105,317–105,388 bp · −
ndhF · NC_062803.1 · 106,778–109,006 bp · −
ndhD · NC_062803.1 · 111,448–112,968 bp · −
psaC · NC_062803.1 · 113,072–113,317 bp · −
ndhE · NC_062803.1 · 113,569–113,874 bp · −
ndhG · NC_062803.1 · 114,084–114,614 bp · −
ndhI · NC_062803.1 · 114,990–115,496 bp · −
ndhA · NC_062803.1 · 115,576–117,687 bp · −
ndhH · NC_062803.1 · 117,689–118,870 bp · −
rps15 · NC_062803.1 · 118,971–119,243 bp · −
ycf1 · NC_062803.1 · 119,633–124,954 bp · −
trnR-ACG · NC_062803.1 · 125,919–125,992 bp · −
M0594_pgr004 · NC_062803.1 · 126,227–126,347 bp · −
M0594_pgr003 · NC_062803.1 · 126,603–126,705 bp · −
M0594_pgr002 · NC_062803.1 · 126,804–129,614 bp · −
trnA-UGC · NC_062803.1 · 129,806–130,684 bp · −
trnI-GAU · NC_062803.1 · 130,749–131,757 bp · −
M0594_pgr001 · NC_062803.1 · 132,051–133,541 bp · −
trnV-GAC · NC_062803.1 · 133,769–133,840 bp · −
ycf15 · NC_062803.1 · 140,125–140,373 bp · −
ycf2 · NC_062803.1 · 140,416–147,300 bp · −
psbK · NC_062803.1 · 6,949–7,134 bp · +
psbI · NC_062803.1 · 7,510–7,620 bp · +
trnG-UCC · NC_062803.1 · 8,488–9,247 bp · +
trnR-UCU · NC_062803.1 · 9,411–9,482 bp · +
trnC-GCA · NC_062803.1 · 27,404–27,474 bp · +
petN · NC_062803.1 · 28,309–28,398 bp · +
trnT-GGU · NC_062803.1 · 30,505–30,576 bp · +
psbD · NC_062803.1 · 31,528–32,589 bp · +
psbC · NC_062803.1 · 32,537–33,958 bp · +
psbZ · NC_062803.1 · 34,607–34,795 bp · +
trnG-GCC · NC_062803.1 · 35,021–35,091 bp · +
trnS-GGA · NC_062803.1 · 43,470–43,556 bp · +
trnL-UAA · NC_062803.1 · 45,451–46,032 bp · +
trnF-GAA · NC_062803.1 · 46,328–46,400 bp · +
trnM-CAU · NC_062803.1 · 50,509–50,581 bp · +
rbcL · NC_062803.1 · 53,491–54,936 bp · +
accD · NC_062803.1 · 55,637–57,103 bp · +
psaI · NC_062803.1 · 57,494–57,604 bp · +
ycf4 · NC_062803.1 · 58,039–58,593 bp · +
cemA · NC_062803.1 · 58,859–59,548 bp · +
petA · NC_062803.1 · 59,772–60,734 bp · +
petL · NC_062803.1 · 63,405–63,500 bp · +
petG · NC_062803.1 · 63,675–63,788 bp · +
psaJ · NC_062803.1 · 64,503–64,637 bp · +
rpl33 · NC_062803.1 · 65,118–65,318 bp · +
rps18 · NC_062803.1 · 65,464–65,769 bp · +
rps12 · NC_062803.1 · 135,438–136,231 bp · +
psbB · NC_062803.1 · 69,638–71,164 bp · +
psbT · NC_062803.1 · 71,349–71,459 bp · +
psbH · NC_062803.1 · 71,768–71,989 bp · +
petB · NC_062803.1 · 72,114–73,486 bp · +
petD · NC_062803.1 · 73,681–74,890 bp · +
ycf2 · NC_062803.1 · 83,378–90,244 bp · +
ycf15 · NC_062803.1 · 90,287–90,535 bp · +
trnV-GAC · NC_062803.1 · 96,828–96,899 bp · +
M0594_pgr008 · NC_062803.1 · 97,127–98,619 bp · +
trnI-GAU · NC_062803.1 · 98,911–99,919 bp · +
trnA-UGC · NC_062803.1 · 99,984–100,862 bp · +
M0594_pgr007 · NC_062803.1 · 101,054–103,864 bp · +
M0594_pgr006 · NC_062803.1 · 103,963–104,065 bp · +
M0594_pgr005 · NC_062803.1 · 104,321–104,441 bp · +
trnR-ACG · NC_062803.1 · 104,676–104,749 bp · +
ycf1 · NC_062803.1 · 105,714–106,772 bp · +
rpl32 · NC_062803.1 · 109,449–109,625 bp · +
trnL-UAG · NC_062803.1 · 110,128–110,207 bp · +
ccsA · NC_062803.1 · 110,295–111,266 bp · +
trnN-GUU · NC_062803.1 · 125,280–125,351 bp · +
rps7 · NC_062803.1 · 136,285–136,752 bp · +
ndhB · NC_062803.1 · 137,027–139,238 bp · +
trnL-CAA · NC_062803.1 · 139,784–139,864 bp · +
trnI-CAU · NC_062803.1 · 147,389–147,462 bp · +
rpl23 · NC_062803.1 · 147,636–147,917 bp · +
rpl2 · NC_062803.1 · 147,936–149,427 bp · +
0 kb
12 kb
24 kb
36 kb
48 kb
60 kb
72 kb
84 kb
96 kb
108 kb
120 kb
132 kb
144 kb
Stachys affinis
ANNOTATED PLASTOME
NC_062803.1
149,521 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
0 37380 74760 112141 149521 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC M0594_pgr008 trnI-GAU trnA-UGC M0594_pgr007 M0594_pgr006 M0594_pgr005 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG M0594_pgr004 M0594_pgr003 M0594_pgr002 trnA-UGC trnI-GAU M0594_pgr001 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 75 75 Locate
psbA gene − 225 1283 1059 Locate
trnK-UUU gene − 1518 4098 2581 Locate
matK gene − 1817 3346 1530 Locate
rps16 gene − 4653 5793 1141 Locate
trnQ-UUG gene − 6541 6612 72 Locate
psbK gene + 6949 7134 186 Locate
psbI gene + 7510 7620 111 Locate
trnS-GCU gene − 7742 7829 88 Locate
trnG-UCC gene + 8488 9247 760 Locate
trnR-UCU gene + 9411 9482 72 Locate
atpA gene − 9579 11102 1524 Locate
atpF gene − 11190 12401 1212 Locate
atpH gene − 12768 13013 246 Locate
atpI gene − 13969 14712 744 Locate
rps2 gene − 14943 15653 711 Locate
rpoC2 gene − 15984 20072 4089 Locate
rpoC1 gene − 20227 23063 2837 Locate
rpoB gene − 23090 26302 3213 Locate
trnC-GCA gene + 27404 27474 71 Locate
petN gene + 28309 28398 90 Locate
psbM gene − 28907 29011 105 Locate
trnD-GUC gene − 29530 29603 74 Locate
trnY-GUA gene − 29719 29802 84 Locate
trnE-UUC gene − 29862 29934 73 Locate
trnT-GGU gene + 30505 30576 72 Locate
psbD gene + 31528 32589 1062 Locate
psbC gene + 32537 33958 1422 Locate
trnS-UGA gene − 34187 34279 93 Locate
psbZ gene + 34607 34795 189 Locate
trnG-GCC gene + 35021 35091 71 Locate
trnfM-CAU gene − 35239 35312 74 Locate
rps14 gene − 35462 35764 303 Locate
psaB gene − 35900 38104 2205 Locate
psaA gene − 38130 40382 2253 Locate
ycf3 gene − 41132 43074 1943 Locate
trnS-GGA gene + 43470 43556 87 Locate
rps4 gene − 43704 44309 606 Locate
trnT-UGU gene − 44695 44767 73 Locate
trnL-UAA gene + 45451 46032 582 Locate
trnF-GAA gene + 46328 46400 73 Locate
ndhJ gene − 47060 47536 477 Locate
ndhK gene − 47637 48314 678 Locate
ndhC gene − 48368 48730 363 Locate
trnV-UAC gene − 49668 50320 653 Locate
trnM-CAU gene + 50509 50581 73 Locate
atpE gene − 50795 51196 402 Locate
atpB gene − 51193 52689 1497 Locate
rbcL gene + 53491 54936 1446 Locate
accD gene + 55637 57103 1467 Locate
psaI gene + 57494 57604 111 Locate
ycf4 gene + 58039 58593 555 Locate
cemA gene + 58859 59548 690 Locate
petA gene + 59772 60734 963 Locate
psbJ gene − 61718 61840 123 Locate
psbL gene − 61978 62094 117 Locate
psbF gene − 62118 62237 120 Locate
psbE gene − 62252 62503 252 Locate
petL gene + 63405 63500 96 Locate
petG gene + 63675 63788 114 Locate
trnW-CCA gene − 63914 63987 74 Locate
trnP-UGG gene − 64157 64230 74 Locate
psaJ gene + 64503 64637 135 Locate
rpl33 gene + 65118 65318 201 Locate
rps18 gene + 65464 65769 306 Locate
rpl20 gene − 65986 66372 387 Locate
rps12 gene − 67106 67219 114 Locate
clpP gene − 67345 69200 1856 Locate
psbB gene + 69638 71164 1527 Locate
psbT gene + 71349 71459 111 Locate
psbN gene − 71533 71664 132 Locate
psbH gene + 71768 71989 222 Locate
petB gene + 72114 73486 1373 Locate
petD gene + 73681 74890 1210 Locate
rpoA gene − 75053 76066 1014 Locate
rps11 gene − 76138 76554 417 Locate
rpl36 gene − 76657 76770 114 Locate
infA gene − 76866 77099 234 Locate
rps8 gene − 77223 77636 414 Locate
rpl14 gene − 77804 78172 369 Locate
rpl16 gene − 78299 79592 1294 Locate
rps3 gene − 79746 80408 663 Locate
rpl22 gene − 80393 80857 465 Locate
rps19 gene − 80921 81199 279 Locate
rpl2 gene − 81251 82742 1492 Locate
rpl23 gene − 82761 83042 282 Locate
trnI-CAU gene − 83216 83289 74 Locate
ycf2 gene + 83378 90244 6867 Locate
ycf15 gene + 90287 90535 249 Locate
trnL-CAA gene − 90796 90876 81 Locate
ndhB gene − 91422 93633 2212 Locate
rps7 gene − 93908 94375 468 Locate
rps12 gene − 94429 95222 794 Locate
trnV-GAC gene + 96828 96899 72 Locate
M0594_pgr008 gene + 97127 98619 1493 Locate
trnI-GAU gene + 98911 99919 1009 Locate
trnA-UGC gene + 99984 100862 879 Locate
M0594_pgr007 gene + 101054 103864 2811 Locate
M0594_pgr006 gene + 103963 104065 103 Locate
M0594_pgr005 gene + 104321 104441 121 Locate
trnR-ACG gene + 104676 104749 74 Locate
trnN-GUU gene − 105317 105388 72 Locate
ycf1 gene + 105714 106772 1059 Locate
ndhF gene − 106778 109006 2229 Locate
rpl32 gene + 109449 109625 177 Locate
trnL-UAG gene + 110128 110207 80 Locate
ccsA gene + 110295 111266 972 Locate
ndhD gene − 111448 112968 1521 Locate
psaC gene − 113072 113317 246 Locate
ndhE gene − 113569 113874 306 Locate
ndhG gene − 114084 114614 531 Locate
ndhI gene − 114990 115496 507 Locate
ndhA gene − 115576 117687 2112 Locate
ndhH gene − 117689 118870 1182 Locate
rps15 gene − 118971 119243 273 Locate
ycf1 gene − 119633 124954 5322 Locate
trnN-GUU gene + 125280 125351 72 Locate
trnR-ACG gene − 125919 125992 74 Locate
M0594_pgr004 gene − 126227 126347 121 Locate
M0594_pgr003 gene − 126603 126705 103 Locate
M0594_pgr002 gene − 126804 129614 2811 Locate
trnA-UGC gene − 129806 130684 879 Locate
trnI-GAU gene − 130749 131757 1009 Locate
M0594_pgr001 gene − 132051 133541 1491 Locate
trnV-GAC gene − 133769 133840 72 Locate
rps12 gene + 135438 136231 794 Locate
rps7 gene + 136285 136752 468 Locate
ndhB gene + 137027 139238 2212 Locate
trnL-CAA gene + 139784 139864 81 Locate
ycf15 gene − 140125 140373 249 Locate
ycf2 gene − 140416 147300 6885 Locate
trnI-CAU gene + 147389 147462 74 Locate
rpl23 gene + 147636 147917 282 Locate
rpl2 gene + 147936 149427 1492 Locate
Status Available
Accession NC_062803.1
Length 149,521 bp
GC content 38.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 23 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources