Stachys chamissonis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_029822.1 · 1–75 bp · −
psbA · NC_029822.1 · 396–1,454 bp · −
trnK-UUU · NC_029822.1 · 1,699–4,278 bp · −
matK · NC_029822.1 · 1,998–3,527 bp · −
rps16 · NC_029822.1 · 4,917–6,057 bp · −
trnQ-UUG · NC_029822.1 · 6,886–6,957 bp · −
trnS-GCU · NC_029822.1 · 8,086–8,173 bp · −
atpA · NC_029822.1 · 9,956–11,479 bp · −
atpF · NC_029822.1 · 11,567–12,776 bp · −
atpH · NC_029822.1 · 13,142–13,387 bp · −
atpI · NC_029822.1 · 14,363–15,106 bp · −
rps2 · NC_029822.1 · 15,337–16,047 bp · −
rpoC2 · NC_029822.1 · 16,385–20,467 bp · −
rpoC1 · NC_029822.1 · 20,622–23,458 bp · −
rpoB · NC_029822.1 · 23,485–26,697 bp · −
psbM · NC_029822.1 · 29,307–29,411 bp · −
trnD-GUC · NC_029822.1 · 29,930–30,003 bp · −
trnY-GUA · NC_029822.1 · 30,119–30,202 bp · −
trnE-UUC · NC_029822.1 · 30,262–30,334 bp · −
trnS-UGA · NC_029822.1 · 34,714–34,806 bp · −
trnfM-CAU · NC_029822.1 · 35,768–35,841 bp · −
rps14 · NC_029822.1 · 35,991–36,293 bp · −
psaB · NC_029822.1 · 36,429–38,633 bp · −
psaA · NC_029822.1 · 38,659–40,911 bp · −
ycf3 · NC_029822.1 · 41,642–43,583 bp · −
rps4 · NC_029822.1 · 44,149–44,754 bp · −
trnT-UGU · NC_029822.1 · 45,140–45,212 bp · −
ndhJ · NC_029822.1 · 47,503–47,979 bp · −
ndhK · NC_029822.1 · 48,080–48,757 bp · −
ndhC · NC_029822.1 · 48,811–49,173 bp · −
trnV-UAC · NC_029822.1 · 50,118–50,764 bp · −
atpE · NC_029822.1 · 51,239–51,640 bp · −
atpB · NC_029822.1 · 51,637–53,133 bp · −
psbJ · NC_029822.1 · 62,268–62,390 bp · −
psbL · NC_029822.1 · 62,528–62,644 bp · −
psbF · NC_029822.1 · 62,668–62,787 bp · −
psbE · NC_029822.1 · 62,802–63,053 bp · −
trnW-CCA · NC_029822.1 · 64,478–64,551 bp · −
trnP-UGG · NC_029822.1 · 64,721–64,794 bp · −
rpl20 · NC_029822.1 · 66,548–66,934 bp · −
rps12 · NC_029822.1 · 67,674–67,787 bp · −
rps12 · NC_029822.1 · 95,004–95,797 bp · −
clpP · NC_029822.1 · 67,913–69,775 bp · −
psbN · NC_029822.1 · 72,108–72,239 bp · −
rpoA · NC_029822.1 · 75,629–76,642 bp · −
rps11 · NC_029822.1 · 76,721–77,137 bp · −
rpl36 · NC_029822.1 · 77,240–77,353 bp · −
infA · NC_029822.1 · 77,449–77,682 bp · −
rps8 · NC_029822.1 · 77,806–78,219 bp · −
rpl14 · NC_029822.1 · 78,393–78,761 bp · −
rpl16 · NC_029822.1 · 78,888–80,189 bp · −
rps3 · NC_029822.1 · 80,331–80,993 bp · −
rpl22 · NC_029822.1 · 80,978–81,442 bp · −
rps19 · NC_029822.1 · 81,506–81,784 bp · −
rpl2 · NC_029822.1 · 81,836–83,317 bp · −
rpl23 · NC_029822.1 · 83,336–83,617 bp · −
trnI-CAU · NC_029822.1 · 83,791–83,864 bp · −
trnL-CAA · NC_029822.1 · 91,371–91,451 bp · −
ndhB · NC_029822.1 · 91,997–94,208 bp · −
rps7 · NC_029822.1 · 94,483–94,950 bp · −
trnN-GUU · NC_029822.1 · 105,748–105,819 bp · −
ndhF · NC_029822.1 · 107,209–109,437 bp · −
ndhD · NC_029822.1 · 112,155–113,675 bp · −
psaC · NC_029822.1 · 113,779–114,024 bp · −
ndhE · NC_029822.1 · 114,276–114,581 bp · −
ndhG · NC_029822.1 · 114,791–115,321 bp · −
ndhI · NC_029822.1 · 115,697–116,203 bp · −
ndhA · NC_029822.1 · 116,283–118,393 bp · −
ndhH · NC_029822.1 · 118,395–119,576 bp · −
rps15 · NC_029822.1 · 119,677–119,949 bp · −
ycf1 · NC_029822.1 · 120,339–125,882 bp · −
trnR-ACG · NC_029822.1 · 126,847–126,920 bp · −
A4350_pgr004 · NC_029822.1 · 127,155–127,275 bp · −
A4350_pgr003 · NC_029822.1 · 127,500–127,602 bp · −
A4350_pgr002 · NC_029822.1 · 127,701–130,511 bp · −
trnA-UGC · NC_029822.1 · 130,711–131,589 bp · −
trnI-GAU · NC_029822.1 · 131,654–132,662 bp · −
A4350_pgr001 · NC_029822.1 · 132,956–134,446 bp · −
trnV-GAC · NC_029822.1 · 134,674–134,745 bp · −
ycf15 · NC_029822.1 · 140,886–141,134 bp · −
ycf2 · NC_029822.1 · 141,177–148,043 bp · −
psbK · NC_029822.1 · 7,294–7,479 bp · +
psbI · NC_029822.1 · 7,854–7,964 bp · +
trnG-UCC · NC_029822.1 · 8,868–9,627 bp · +
trnR-UCU · NC_029822.1 · 9,788–9,859 bp · +
trnC-GCA · NC_029822.1 · 27,802–27,872 bp · +
petN · NC_029822.1 · 28,708–28,797 bp · +
trnT-GGU · NC_029822.1 · 30,905–30,976 bp · +
psbD · NC_029822.1 · 32,052–33,113 bp · +
psbC · NC_029822.1 · 33,061–34,482 bp · +
psbZ · NC_029822.1 · 35,135–35,323 bp · +
trnG-GCC · NC_029822.1 · 35,548–35,618 bp · +
trnS-GGA · NC_029822.1 · 43,900–43,986 bp · +
trnL-UAA · NC_029822.1 · 45,903–46,476 bp · +
trnF-GAA · NC_029822.1 · 46,772–46,844 bp · +
trnM-CAU · NC_029822.1 · 50,953–51,025 bp · +
rbcL · NC_029822.1 · 53,936–55,381 bp · +
accD · NC_029822.1 · 56,085–57,551 bp · +
psaI · NC_029822.1 · 57,949–58,059 bp · +
ycf4 · NC_029822.1 · 58,494–59,048 bp · +
cemA · NC_029822.1 · 59,355–60,044 bp · +
petA · NC_029822.1 · 60,262–61,224 bp · +
petL · NC_029822.1 · 63,969–64,064 bp · +
petG · NC_029822.1 · 64,239–64,352 bp · +
psaJ · NC_029822.1 · 65,065–65,199 bp · +
rpl33 · NC_029822.1 · 65,679–65,879 bp · +
rps18 · NC_029822.1 · 66,026–66,331 bp · +
rps12 · NC_029822.1 · 136,199–136,992 bp · +
psbB · NC_029822.1 · 70,213–71,739 bp · +
psbT · NC_029822.1 · 71,924–72,034 bp · +
psbH · NC_029822.1 · 72,343–72,564 bp · +
petB · NC_029822.1 · 72,689–74,062 bp · +
petD · NC_029822.1 · 74,257–75,466 bp · +
ycf2 · NC_029822.1 · 83,953–90,819 bp · +
ycf15 · NC_029822.1 · 90,862–91,110 bp · +
trnV-GAC · NC_029822.1 · 97,251–97,322 bp · +
A4350_pgr008 · NC_029822.1 · 97,550–99,042 bp · +
trnI-GAU · NC_029822.1 · 99,334–100,342 bp · +
trnA-UGC · NC_029822.1 · 100,407–101,285 bp · +
A4350_pgr007 · NC_029822.1 · 101,485–104,295 bp · +
A4350_pgr006 · NC_029822.1 · 104,394–104,496 bp · +
A4350_pgr005 · NC_029822.1 · 104,752–104,872 bp · +
trnR-ACG · NC_029822.1 · 105,107–105,180 bp · +
ycf1 · NC_029822.1 · 106,145–107,203 bp · +
rpl32 · NC_029822.1 · 109,931–110,107 bp · +
trnL-UAG · NC_029822.1 · 110,843–110,922 bp · +
ccsA · NC_029822.1 · 111,003–111,974 bp · +
trnN-GUU · NC_029822.1 · 126,208–126,279 bp · +
rps7 · NC_029822.1 · 137,046–137,513 bp · +
ndhB · NC_029822.1 · 137,788–139,999 bp · +
trnL-CAA · NC_029822.1 · 140,545–140,625 bp · +
trnI-CAU · NC_029822.1 · 148,132–148,205 bp · +
rpl23 · NC_029822.1 · 148,379–148,660 bp · +
rpl2 · NC_029822.1 · 148,679–150,160 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Stachys chamissonis
ANNOTATED PLASTOME
NC_029822.1
150,254 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
0 37564 75127 112690 150254 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC A4350_pgr008 trnI-GAU trnA-UGC A4350_pgr007 A4350_pgr006 A4350_pgr005 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG A4350_pgr004 A4350_pgr003 A4350_pgr002 trnA-UGC trnI-GAU A4350_pgr001 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 75 75 Locate
psbA gene − 396 1454 1059 Locate
trnK-UUU gene − 1699 4278 2580 Locate
matK gene − 1998 3527 1530 Locate
rps16 gene − 4917 6057 1141 Locate
trnQ-UUG gene − 6886 6957 72 Locate
psbK gene + 7294 7479 186 Locate
psbI gene + 7854 7964 111 Locate
trnS-GCU gene − 8086 8173 88 Locate
trnG-UCC gene + 8868 9627 760 Locate
trnR-UCU gene + 9788 9859 72 Locate
atpA gene − 9956 11479 1524 Locate
atpF gene − 11567 12776 1210 Locate
atpH gene − 13142 13387 246 Locate
atpI gene − 14363 15106 744 Locate
rps2 gene − 15337 16047 711 Locate
rpoC2 gene − 16385 20467 4083 Locate
rpoC1 gene − 20622 23458 2837 Locate
rpoB gene − 23485 26697 3213 Locate
trnC-GCA gene + 27802 27872 71 Locate
petN gene + 28708 28797 90 Locate
psbM gene − 29307 29411 105 Locate
trnD-GUC gene − 29930 30003 74 Locate
trnY-GUA gene − 30119 30202 84 Locate
trnE-UUC gene − 30262 30334 73 Locate
trnT-GGU gene + 30905 30976 72 Locate
psbD gene + 32052 33113 1062 Locate
psbC gene + 33061 34482 1422 Locate
trnS-UGA gene − 34714 34806 93 Locate
psbZ gene + 35135 35323 189 Locate
trnG-GCC gene + 35548 35618 71 Locate
trnfM-CAU gene − 35768 35841 74 Locate
rps14 gene − 35991 36293 303 Locate
psaB gene − 36429 38633 2205 Locate
psaA gene − 38659 40911 2253 Locate
ycf3 gene − 41642 43583 1942 Locate
trnS-GGA gene + 43900 43986 87 Locate
rps4 gene − 44149 44754 606 Locate
trnT-UGU gene − 45140 45212 73 Locate
trnL-UAA gene + 45903 46476 574 Locate
trnF-GAA gene + 46772 46844 73 Locate
ndhJ gene − 47503 47979 477 Locate
ndhK gene − 48080 48757 678 Locate
ndhC gene − 48811 49173 363 Locate
trnV-UAC gene − 50118 50764 647 Locate
trnM-CAU gene + 50953 51025 73 Locate
atpE gene − 51239 51640 402 Locate
atpB gene − 51637 53133 1497 Locate
rbcL gene + 53936 55381 1446 Locate
accD gene + 56085 57551 1467 Locate
psaI gene + 57949 58059 111 Locate
ycf4 gene + 58494 59048 555 Locate
cemA gene + 59355 60044 690 Locate
petA gene + 60262 61224 963 Locate
psbJ gene − 62268 62390 123 Locate
psbL gene − 62528 62644 117 Locate
psbF gene − 62668 62787 120 Locate
psbE gene − 62802 63053 252 Locate
petL gene + 63969 64064 96 Locate
petG gene + 64239 64352 114 Locate
trnW-CCA gene − 64478 64551 74 Locate
trnP-UGG gene − 64721 64794 74 Locate
psaJ gene + 65065 65199 135 Locate
rpl33 gene + 65679 65879 201 Locate
rps18 gene + 66026 66331 306 Locate
rpl20 gene − 66548 66934 387 Locate
rps12 gene − 67674 67787 114 Locate
clpP gene − 67913 69775 1863 Locate
psbB gene + 70213 71739 1527 Locate
psbT gene + 71924 72034 111 Locate
psbN gene − 72108 72239 132 Locate
psbH gene + 72343 72564 222 Locate
petB gene + 72689 74062 1374 Locate
petD gene + 74257 75466 1210 Locate
rpoA gene − 75629 76642 1014 Locate
rps11 gene − 76721 77137 417 Locate
rpl36 gene − 77240 77353 114 Locate
infA gene − 77449 77682 234 Locate
rps8 gene − 77806 78219 414 Locate
rpl14 gene − 78393 78761 369 Locate
rpl16 gene − 78888 80189 1302 Locate
rps3 gene − 80331 80993 663 Locate
rpl22 gene − 80978 81442 465 Locate
rps19 gene − 81506 81784 279 Locate
rpl2 gene − 81836 83317 1482 Locate
rpl23 gene − 83336 83617 282 Locate
trnI-CAU gene − 83791 83864 74 Locate
ycf2 gene + 83953 90819 6867 Locate
ycf15 gene + 90862 91110 249 Locate
trnL-CAA gene − 91371 91451 81 Locate
ndhB gene − 91997 94208 2212 Locate
rps7 gene − 94483 94950 468 Locate
rps12 gene − 95004 95797 794 Locate
trnV-GAC gene + 97251 97322 72 Locate
A4350_pgr008 gene + 97550 99042 1493 Locate
trnI-GAU gene + 99334 100342 1009 Locate
trnA-UGC gene + 100407 101285 879 Locate
A4350_pgr007 gene + 101485 104295 2811 Locate
A4350_pgr006 gene + 104394 104496 103 Locate
A4350_pgr005 gene + 104752 104872 121 Locate
trnR-ACG gene + 105107 105180 74 Locate
trnN-GUU gene − 105748 105819 72 Locate
ycf1 gene + 106145 107203 1059 Locate
ndhF gene − 107209 109437 2229 Locate
rpl32 gene + 109931 110107 177 Locate
trnL-UAG gene + 110843 110922 80 Locate
ccsA gene + 111003 111974 972 Locate
ndhD gene − 112155 113675 1521 Locate
psaC gene − 113779 114024 246 Locate
ndhE gene − 114276 114581 306 Locate
ndhG gene − 114791 115321 531 Locate
ndhI gene − 115697 116203 507 Locate
ndhA gene − 116283 118393 2111 Locate
ndhH gene − 118395 119576 1182 Locate
rps15 gene − 119677 119949 273 Locate
ycf1 gene − 120339 125882 5544 Locate
trnN-GUU gene + 126208 126279 72 Locate
trnR-ACG gene − 126847 126920 74 Locate
A4350_pgr004 gene − 127155 127275 121 Locate
A4350_pgr003 gene − 127500 127602 103 Locate
A4350_pgr002 gene − 127701 130511 2811 Locate
trnA-UGC gene − 130711 131589 879 Locate
trnI-GAU gene − 131654 132662 1009 Locate
A4350_pgr001 gene − 132956 134446 1491 Locate
trnV-GAC gene − 134674 134745 72 Locate
rps12 gene + 136199 136992 794 Locate
rps7 gene + 137046 137513 468 Locate
ndhB gene + 137788 139999 2212 Locate
trnL-CAA gene + 140545 140625 81 Locate
ycf15 gene − 140886 141134 249 Locate
ycf2 gene − 141177 148043 6867 Locate
trnI-CAU gene + 148132 148205 74 Locate
rpl23 gene + 148379 148660 282 Locate
rpl2 gene + 148679 150160 1482 Locate
Status Available
Accession NC_029822.1
Length 150,254 bp
GC content 38.5%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 23 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources