Coordinate-aware organelle record

Stachys coccinea chloroplast genome

Available NC_029823.1 150,275 bp 133 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

133 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	0	75	75
psbA	gene	photosystem-ii	−	395	1454	1059
trnK-UUU	gene	translation-rna	−	1698	4278	2580
matK	gene	other	−	1997	3527	1530
rps16	gene	ribosomal-protein	−	4916	6057	1141
trnQ-UUG	gene	translation-rna	−	6885	6957	72
psbK	gene	photosystem-ii	+	7293	7479	186
psbI	gene	photosystem-ii	+	7853	7964	111
trnS-GCU	gene	translation-rna	−	8085	8173	88
trnG-UCC	gene	translation-rna	+	8858	9618	760
trnR-UCU	gene	translation-rna	+	9778	9850	72
atpA	gene	atp-synthase	−	9946	11470	1524
atpF	gene	atp-synthase	−	11557	12767	1210
atpH	gene	atp-synthase	−	13132	13378	246
atpI	gene	atp-synthase	−	14353	15097	744
rps2	gene	ribosomal-protein	−	15327	16038	711
rpoC2	gene	rna-polymerase	−	16375	20458	4083
rpoC1	gene	rna-polymerase	−	20612	23449	2837
rpoB	gene	rna-polymerase	−	23475	26688	3213
trnC-GCA	gene	translation-rna	+	27785	27856	71
petN	gene	cytochrome	+	28691	28781	90
psbM	gene	photosystem-ii	−	29283	29388	105
trnD-GUC	gene	translation-rna	−	29906	29980	74
trnY-GUA	gene	translation-rna	−	30094	30178	84
trnE-UUC	gene	translation-rna	−	30237	30310	73
trnT-GGU	gene	translation-rna	+	30880	30952	72
psbD	gene	photosystem-ii	+	32027	33089	1062
psbC	gene	photosystem-ii	+	33036	34458	1422
trnS-UGA	gene	translation-rna	−	34688	34781	93
psbZ	gene	photosystem-ii	+	35109	35298	189
trnG-GCC	gene	translation-rna	+	35522	35593	71
trnfM-CAU	gene	translation-rna	−	35742	35816	74
rps14	gene	ribosomal-protein	−	35965	36268	303
psaB	gene	photosystem-i	−	36403	38608	2205
psaA	gene	photosystem-i	−	38633	40886	2253
ycf3	gene	other	−	41609	43552	1943
trnS-GGA	gene	translation-rna	+	43868	43955	87
rps4	gene	ribosomal-protein	−	44117	44723	606
trnT-UGU	gene	translation-rna	−	45108	45181	73
trnL-UAA	gene	translation-rna	+	45866	46440	574
trnF-GAA	gene	translation-rna	+	46735	46808	73
ndhJ	gene	nad-dehydrogenase	−	47466	47943	477
ndhK	gene	nad-dehydrogenase	−	48043	48721	678
ndhC	gene	nad-dehydrogenase	−	48774	49137	363
trnV-UAC	gene	translation-rna	−	50081	50734	653
trnM-CAU	gene	translation-rna	+	50922	50995	73
atpE	gene	atp-synthase	−	51202	51604	402
atpB	gene	atp-synthase	−	51600	53097	1497
rbcL	gene	other	+	53899	55345	1446
accD	gene	other	+	56049	57516	1467
psaI	gene	photosystem-i	+	57913	58024	111
ycf4	gene	other	+	58471	59026	555
cemA	gene	other	+	59332	60022	690
petA	gene	cytochrome	+	60233	61196	963
psbJ	gene	photosystem-ii	−	62251	62374	123
psbL	gene	photosystem-ii	−	62511	62628	117
psbF	gene	photosystem-ii	−	62651	62771	120
psbE	gene	photosystem-ii	−	62785	63037	252
petL	gene	cytochrome	+	63952	64048	96
petG	gene	cytochrome	+	64222	64336	114
trnW-CCA	gene	translation-rna	−	64461	64535	74
trnP-UGG	gene	translation-rna	−	64703	64777	74
psaJ	gene	photosystem-i	+	65047	65182	135
rpl33	gene	ribosomal-protein	+	65660	65861	201
rps18	gene	ribosomal-protein	+	66007	66313	306
rpl20	gene	ribosomal-protein	−	66529	66916	387
rps12	gene	ribosomal-protein	−	67655	95801	28146
rps12	gene	ribosomal-protein	+	67655	137007	69352
clpP	gene	other	−	67894	69756	1862
psbB	gene	photosystem-ii	+	70211	71738	1527
psbT	gene	photosystem-ii	+	71922	72033	111
psbN	gene	photosystem-ii	−	72106	72238	132
psbH	gene	photosystem-ii	+	72341	72563	222
petB	gene	cytochrome	+	72687	74061	1374
petD	gene	cytochrome	+	74255	75465	1210
rpoA	gene	rna-polymerase	−	75627	76641	1014
rps11	gene	ribosomal-protein	−	76719	77136	417
rpl36	gene	ribosomal-protein	−	77238	77352	114
infA	gene	other	−	77447	77681	234
rps8	gene	ribosomal-protein	−	77803	78217	414
rpl14	gene	ribosomal-protein	−	78390	78759	369
rpl16	gene	ribosomal-protein	−	78885	80187	1302
rps3	gene	ribosomal-protein	−	80328	80991	663
rpl22	gene	ribosomal-protein	−	80975	81440	465
rps19	gene	ribosomal-protein	−	81503	81782	279
rpl2	gene	ribosomal-protein	−	81833	83315	1482
rpl23	gene	ribosomal-protein	−	83333	83615	282
trnI-CAU	gene	translation-rna	−	83788	83862	74
ycf2	gene	other	+	83950	90817	6867
ycf15	gene	other	+	90859	91108	249
trnL-CAA	gene	translation-rna	−	91368	91449	81
ndhB	gene	nad-dehydrogenase	−	92000	94212	2212
rps7	gene	ribosomal-protein	−	94486	94954	468
trnV-GAC	gene	translation-rna	+	97254	97326	72
A4321_pgr008	gene	other	+	97553	99046	1493
trnI-GAU	gene	translation-rna	+	99337	100346	1009
trnA-UGC	gene	translation-rna	+	100410	101289	879
A4321_pgr007	gene	other	+	101488	104299	2811
A4321_pgr006	gene	other	+	104397	104500	103
A4321_pgr005	gene	other	+	104755	104876	121
trnR-ACG	gene	translation-rna	+	105110	105184	74
trnN-GUU	gene	translation-rna	−	105751	105823	72
ycf1	gene	other	+	106148	107207	1059
ndhF	gene	nad-dehydrogenase	−	107212	109441	2229
rpl32	gene	ribosomal-protein	+	109934	110111	177
trnL-UAG	gene	translation-rna	+	110848	110928	80
ccsA	gene	other	+	111008	111980	972
ndhD	gene	nad-dehydrogenase	−	112160	113681	1521
psaC	gene	photosystem-i	−	113784	114030	246
ndhE	gene	nad-dehydrogenase	−	114281	114587	306
ndhG	gene	nad-dehydrogenase	−	114796	115327	531
ndhI	gene	nad-dehydrogenase	−	115702	116209	507
ndhA	gene	nad-dehydrogenase	−	116288	118399	2111
ndhH	gene	nad-dehydrogenase	−	118400	119582	1182
rps15	gene	ribosomal-protein	−	119682	119955	273
ycf1	gene	other	−	120344	125897	5553
trnN-GUU	gene	translation-rna	+	126222	126294	72
trnR-ACG	gene	translation-rna	−	126861	126935	74
A4321_pgr004	gene	other	−	127169	127290	121
A4321_pgr003	gene	other	−	127514	127617	103
A4321_pgr002	gene	other	−	127715	130526	2811
trnA-UGC	gene	translation-rna	−	130725	131604	879
trnI-GAU	gene	translation-rna	−	131668	132677	1009
A4321_pgr001	gene	other	−	132970	134461	1491
trnV-GAC	gene	translation-rna	−	134688	134760	72
rps7	gene	ribosomal-protein	+	137060	137528	468
ndhB	gene	nad-dehydrogenase	+	137802	140014	2212
trnL-CAA	gene	translation-rna	+	140565	140646	81
ycf15	gene	other	−	140906	141155	249
ycf2	gene	other	−	141197	148064	6867
trnI-CAU	gene	translation-rna	+	148152	148226	74
rpl23	gene	ribosomal-protein	+	148399	148681	282
rpl2	gene	ribosomal-protein	+	148699	150181	1482

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomeNC_029823.1DNA · accDNC_029823DNA · atpBNC_029823DNA · matKNC_029823DNA · ndhFNC_029823DNA · psbANC_029823DNA · rbcLNC_029823DNA · rps12NC_029823DNA · ycf1NC_029823