Stachys coccinea chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_029823.1 · 1–75 bp · −
psbA · NC_029823.1 · 396–1,454 bp · −
trnK-UUU · NC_029823.1 · 1,699–4,278 bp · −
matK · NC_029823.1 · 1,998–3,527 bp · −
rps16 · NC_029823.1 · 4,917–6,057 bp · −
trnQ-UUG · NC_029823.1 · 6,886–6,957 bp · −
trnS-GCU · NC_029823.1 · 8,086–8,173 bp · −
atpA · NC_029823.1 · 9,947–11,470 bp · −
atpF · NC_029823.1 · 11,558–12,767 bp · −
atpH · NC_029823.1 · 13,133–13,378 bp · −
atpI · NC_029823.1 · 14,354–15,097 bp · −
rps2 · NC_029823.1 · 15,328–16,038 bp · −
rpoC2 · NC_029823.1 · 16,376–20,458 bp · −
rpoC1 · NC_029823.1 · 20,613–23,449 bp · −
rpoB · NC_029823.1 · 23,476–26,688 bp · −
psbM · NC_029823.1 · 29,284–29,388 bp · −
trnD-GUC · NC_029823.1 · 29,907–29,980 bp · −
trnY-GUA · NC_029823.1 · 30,095–30,178 bp · −
trnE-UUC · NC_029823.1 · 30,238–30,310 bp · −
trnS-UGA · NC_029823.1 · 34,689–34,781 bp · −
trnfM-CAU · NC_029823.1 · 35,743–35,816 bp · −
rps14 · NC_029823.1 · 35,966–36,268 bp · −
psaB · NC_029823.1 · 36,404–38,608 bp · −
psaA · NC_029823.1 · 38,634–40,886 bp · −
ycf3 · NC_029823.1 · 41,610–43,552 bp · −
rps4 · NC_029823.1 · 44,118–44,723 bp · −
trnT-UGU · NC_029823.1 · 45,109–45,181 bp · −
ndhJ · NC_029823.1 · 47,467–47,943 bp · −
ndhK · NC_029823.1 · 48,044–48,721 bp · −
ndhC · NC_029823.1 · 48,775–49,137 bp · −
trnV-UAC · NC_029823.1 · 50,082–50,734 bp · −
atpE · NC_029823.1 · 51,203–51,604 bp · −
atpB · NC_029823.1 · 51,601–53,097 bp · −
psbJ · NC_029823.1 · 62,252–62,374 bp · −
psbL · NC_029823.1 · 62,512–62,628 bp · −
psbF · NC_029823.1 · 62,652–62,771 bp · −
psbE · NC_029823.1 · 62,786–63,037 bp · −
trnW-CCA · NC_029823.1 · 64,462–64,535 bp · −
trnP-UGG · NC_029823.1 · 64,704–64,777 bp · −
rpl20 · NC_029823.1 · 66,530–66,916 bp · −
rps12 · NC_029823.1 · 67,656–67,769 bp · −
rps12 · NC_029823.1 · 95,008–95,801 bp · −
clpP · NC_029823.1 · 67,895–69,756 bp · −
psbN · NC_029823.1 · 72,107–72,238 bp · −
rpoA · NC_029823.1 · 75,628–76,641 bp · −
rps11 · NC_029823.1 · 76,720–77,136 bp · −
rpl36 · NC_029823.1 · 77,239–77,352 bp · −
infA · NC_029823.1 · 77,448–77,681 bp · −
rps8 · NC_029823.1 · 77,804–78,217 bp · −
rpl14 · NC_029823.1 · 78,391–78,759 bp · −
rpl16 · NC_029823.1 · 78,886–80,187 bp · −
rps3 · NC_029823.1 · 80,329–80,991 bp · −
rpl22 · NC_029823.1 · 80,976–81,440 bp · −
rps19 · NC_029823.1 · 81,504–81,782 bp · −
rpl2 · NC_029823.1 · 81,834–83,315 bp · −
rpl23 · NC_029823.1 · 83,334–83,615 bp · −
trnI-CAU · NC_029823.1 · 83,789–83,862 bp · −
trnL-CAA · NC_029823.1 · 91,369–91,449 bp · −
ndhB · NC_029823.1 · 92,001–94,212 bp · −
rps7 · NC_029823.1 · 94,487–94,954 bp · −
trnN-GUU · NC_029823.1 · 105,752–105,823 bp · −
ndhF · NC_029823.1 · 107,213–109,441 bp · −
ndhD · NC_029823.1 · 112,161–113,681 bp · −
psaC · NC_029823.1 · 113,785–114,030 bp · −
ndhE · NC_029823.1 · 114,282–114,587 bp · −
ndhG · NC_029823.1 · 114,797–115,327 bp · −
ndhI · NC_029823.1 · 115,703–116,209 bp · −
ndhA · NC_029823.1 · 116,289–118,399 bp · −
ndhH · NC_029823.1 · 118,401–119,582 bp · −
rps15 · NC_029823.1 · 119,683–119,955 bp · −
ycf1 · NC_029823.1 · 120,345–125,897 bp · −
trnR-ACG · NC_029823.1 · 126,862–126,935 bp · −
A4321_pgr004 · NC_029823.1 · 127,170–127,290 bp · −
A4321_pgr003 · NC_029823.1 · 127,515–127,617 bp · −
A4321_pgr002 · NC_029823.1 · 127,716–130,526 bp · −
trnA-UGC · NC_029823.1 · 130,726–131,604 bp · −
trnI-GAU · NC_029823.1 · 131,669–132,677 bp · −
A4321_pgr001 · NC_029823.1 · 132,971–134,461 bp · −
trnV-GAC · NC_029823.1 · 134,689–134,760 bp · −
ycf15 · NC_029823.1 · 140,907–141,155 bp · −
ycf2 · NC_029823.1 · 141,198–148,064 bp · −
psbK · NC_029823.1 · 7,294–7,479 bp · +
psbI · NC_029823.1 · 7,854–7,964 bp · +
trnG-UCC · NC_029823.1 · 8,859–9,618 bp · +
trnR-UCU · NC_029823.1 · 9,779–9,850 bp · +
trnC-GCA · NC_029823.1 · 27,786–27,856 bp · +
petN · NC_029823.1 · 28,692–28,781 bp · +
trnT-GGU · NC_029823.1 · 30,881–30,952 bp · +
psbD · NC_029823.1 · 32,028–33,089 bp · +
psbC · NC_029823.1 · 33,037–34,458 bp · +
psbZ · NC_029823.1 · 35,110–35,298 bp · +
trnG-GCC · NC_029823.1 · 35,523–35,593 bp · +
trnS-GGA · NC_029823.1 · 43,869–43,955 bp · +
trnL-UAA · NC_029823.1 · 45,867–46,440 bp · +
trnF-GAA · NC_029823.1 · 46,736–46,808 bp · +
trnM-CAU · NC_029823.1 · 50,923–50,995 bp · +
rbcL · NC_029823.1 · 53,900–55,345 bp · +
accD · NC_029823.1 · 56,050–57,516 bp · +
psaI · NC_029823.1 · 57,914–58,024 bp · +
ycf4 · NC_029823.1 · 58,472–59,026 bp · +
cemA · NC_029823.1 · 59,333–60,022 bp · +
petA · NC_029823.1 · 60,234–61,196 bp · +
petL · NC_029823.1 · 63,953–64,048 bp · +
petG · NC_029823.1 · 64,223–64,336 bp · +
psaJ · NC_029823.1 · 65,048–65,182 bp · +
rpl33 · NC_029823.1 · 65,661–65,861 bp · +
rps18 · NC_029823.1 · 66,008–66,313 bp · +
rps12 · NC_029823.1 · 136,214–137,007 bp · +
psbB · NC_029823.1 · 70,212–71,738 bp · +
psbT · NC_029823.1 · 71,923–72,033 bp · +
psbH · NC_029823.1 · 72,342–72,563 bp · +
petB · NC_029823.1 · 72,688–74,061 bp · +
petD · NC_029823.1 · 74,256–75,465 bp · +
ycf2 · NC_029823.1 · 83,951–90,817 bp · +
ycf15 · NC_029823.1 · 90,860–91,108 bp · +
trnV-GAC · NC_029823.1 · 97,255–97,326 bp · +
A4321_pgr008 · NC_029823.1 · 97,554–99,046 bp · +
trnI-GAU · NC_029823.1 · 99,338–100,346 bp · +
trnA-UGC · NC_029823.1 · 100,411–101,289 bp · +
A4321_pgr007 · NC_029823.1 · 101,489–104,299 bp · +
A4321_pgr006 · NC_029823.1 · 104,398–104,500 bp · +
A4321_pgr005 · NC_029823.1 · 104,756–104,876 bp · +
trnR-ACG · NC_029823.1 · 105,111–105,184 bp · +
ycf1 · NC_029823.1 · 106,149–107,207 bp · +
rpl32 · NC_029823.1 · 109,935–110,111 bp · +
trnL-UAG · NC_029823.1 · 110,849–110,928 bp · +
ccsA · NC_029823.1 · 111,009–111,980 bp · +
trnN-GUU · NC_029823.1 · 126,223–126,294 bp · +
rps7 · NC_029823.1 · 137,061–137,528 bp · +
ndhB · NC_029823.1 · 137,803–140,014 bp · +
trnL-CAA · NC_029823.1 · 140,566–140,646 bp · +
trnI-CAU · NC_029823.1 · 148,153–148,226 bp · +
rpl23 · NC_029823.1 · 148,400–148,681 bp · +
rpl2 · NC_029823.1 · 148,700–150,181 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Stachys coccinea
ANNOTATED PLASTOME
NC_029823.1
150,275 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
0 37569 75138 112706 150275 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC A4321_pgr008 trnI-GAU trnA-UGC A4321_pgr007 A4321_pgr006 A4321_pgr005 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG A4321_pgr004 A4321_pgr003 A4321_pgr002 trnA-UGC trnI-GAU A4321_pgr001 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 75 75 Locate
psbA gene − 396 1454 1059 Locate
trnK-UUU gene − 1699 4278 2580 Locate
matK gene − 1998 3527 1530 Locate
rps16 gene − 4917 6057 1141 Locate
trnQ-UUG gene − 6886 6957 72 Locate
psbK gene + 7294 7479 186 Locate
psbI gene + 7854 7964 111 Locate
trnS-GCU gene − 8086 8173 88 Locate
trnG-UCC gene + 8859 9618 760 Locate
trnR-UCU gene + 9779 9850 72 Locate
atpA gene − 9947 11470 1524 Locate
atpF gene − 11558 12767 1210 Locate
atpH gene − 13133 13378 246 Locate
atpI gene − 14354 15097 744 Locate
rps2 gene − 15328 16038 711 Locate
rpoC2 gene − 16376 20458 4083 Locate
rpoC1 gene − 20613 23449 2837 Locate
rpoB gene − 23476 26688 3213 Locate
trnC-GCA gene + 27786 27856 71 Locate
petN gene + 28692 28781 90 Locate
psbM gene − 29284 29388 105 Locate
trnD-GUC gene − 29907 29980 74 Locate
trnY-GUA gene − 30095 30178 84 Locate
trnE-UUC gene − 30238 30310 73 Locate
trnT-GGU gene + 30881 30952 72 Locate
psbD gene + 32028 33089 1062 Locate
psbC gene + 33037 34458 1422 Locate
trnS-UGA gene − 34689 34781 93 Locate
psbZ gene + 35110 35298 189 Locate
trnG-GCC gene + 35523 35593 71 Locate
trnfM-CAU gene − 35743 35816 74 Locate
rps14 gene − 35966 36268 303 Locate
psaB gene − 36404 38608 2205 Locate
psaA gene − 38634 40886 2253 Locate
ycf3 gene − 41610 43552 1943 Locate
trnS-GGA gene + 43869 43955 87 Locate
rps4 gene − 44118 44723 606 Locate
trnT-UGU gene − 45109 45181 73 Locate
trnL-UAA gene + 45867 46440 574 Locate
trnF-GAA gene + 46736 46808 73 Locate
ndhJ gene − 47467 47943 477 Locate
ndhK gene − 48044 48721 678 Locate
ndhC gene − 48775 49137 363 Locate
trnV-UAC gene − 50082 50734 653 Locate
trnM-CAU gene + 50923 50995 73 Locate
atpE gene − 51203 51604 402 Locate
atpB gene − 51601 53097 1497 Locate
rbcL gene + 53900 55345 1446 Locate
accD gene + 56050 57516 1467 Locate
psaI gene + 57914 58024 111 Locate
ycf4 gene + 58472 59026 555 Locate
cemA gene + 59333 60022 690 Locate
petA gene + 60234 61196 963 Locate
psbJ gene − 62252 62374 123 Locate
psbL gene − 62512 62628 117 Locate
psbF gene − 62652 62771 120 Locate
psbE gene − 62786 63037 252 Locate
petL gene + 63953 64048 96 Locate
petG gene + 64223 64336 114 Locate
trnW-CCA gene − 64462 64535 74 Locate
trnP-UGG gene − 64704 64777 74 Locate
psaJ gene + 65048 65182 135 Locate
rpl33 gene + 65661 65861 201 Locate
rps18 gene + 66008 66313 306 Locate
rpl20 gene − 66530 66916 387 Locate
rps12 gene − 67656 67769 114 Locate
clpP gene − 67895 69756 1862 Locate
psbB gene + 70212 71738 1527 Locate
psbT gene + 71923 72033 111 Locate
psbN gene − 72107 72238 132 Locate
psbH gene + 72342 72563 222 Locate
petB gene + 72688 74061 1374 Locate
petD gene + 74256 75465 1210 Locate
rpoA gene − 75628 76641 1014 Locate
rps11 gene − 76720 77136 417 Locate
rpl36 gene − 77239 77352 114 Locate
infA gene − 77448 77681 234 Locate
rps8 gene − 77804 78217 414 Locate
rpl14 gene − 78391 78759 369 Locate
rpl16 gene − 78886 80187 1302 Locate
rps3 gene − 80329 80991 663 Locate
rpl22 gene − 80976 81440 465 Locate
rps19 gene − 81504 81782 279 Locate
rpl2 gene − 81834 83315 1482 Locate
rpl23 gene − 83334 83615 282 Locate
trnI-CAU gene − 83789 83862 74 Locate
ycf2 gene + 83951 90817 6867 Locate
ycf15 gene + 90860 91108 249 Locate
trnL-CAA gene − 91369 91449 81 Locate
ndhB gene − 92001 94212 2212 Locate
rps7 gene − 94487 94954 468 Locate
rps12 gene − 95008 95801 794 Locate
trnV-GAC gene + 97255 97326 72 Locate
A4321_pgr008 gene + 97554 99046 1493 Locate
trnI-GAU gene + 99338 100346 1009 Locate
trnA-UGC gene + 100411 101289 879 Locate
A4321_pgr007 gene + 101489 104299 2811 Locate
A4321_pgr006 gene + 104398 104500 103 Locate
A4321_pgr005 gene + 104756 104876 121 Locate
trnR-ACG gene + 105111 105184 74 Locate
trnN-GUU gene − 105752 105823 72 Locate
ycf1 gene + 106149 107207 1059 Locate
ndhF gene − 107213 109441 2229 Locate
rpl32 gene + 109935 110111 177 Locate
trnL-UAG gene + 110849 110928 80 Locate
ccsA gene + 111009 111980 972 Locate
ndhD gene − 112161 113681 1521 Locate
psaC gene − 113785 114030 246 Locate
ndhE gene − 114282 114587 306 Locate
ndhG gene − 114797 115327 531 Locate
ndhI gene − 115703 116209 507 Locate
ndhA gene − 116289 118399 2111 Locate
ndhH gene − 118401 119582 1182 Locate
rps15 gene − 119683 119955 273 Locate
ycf1 gene − 120345 125897 5553 Locate
trnN-GUU gene + 126223 126294 72 Locate
trnR-ACG gene − 126862 126935 74 Locate
A4321_pgr004 gene − 127170 127290 121 Locate
A4321_pgr003 gene − 127515 127617 103 Locate
A4321_pgr002 gene − 127716 130526 2811 Locate
trnA-UGC gene − 130726 131604 879 Locate
trnI-GAU gene − 131669 132677 1009 Locate
A4321_pgr001 gene − 132971 134461 1491 Locate
trnV-GAC gene − 134689 134760 72 Locate
rps12 gene + 136214 137007 794 Locate
rps7 gene + 137061 137528 468 Locate
ndhB gene + 137803 140014 2212 Locate
trnL-CAA gene + 140566 140646 81 Locate
ycf15 gene − 140907 141155 249 Locate
ycf2 gene − 141198 148064 6867 Locate
trnI-CAU gene + 148153 148226 74 Locate
rpl23 gene + 148400 148681 282 Locate
rpl2 gene + 148700 150181 1482 Locate
Status Available
Accession NC_029823.1
Length 150,275 bp
GC content 38.5%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 23 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources