Stachys germanica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PX260186.1 · 2–76 bp · −
psbA · PX260186.1 · 508–1,566 bp · −
trnK-UUU · PX260186.1 · 1,799–4,375 bp · −
matK · PX260186.1 · 2,098–3,627 bp · −
rps16 · PX260186.1 · 5,056–6,182 bp · −
trnQ-UUG · PX260186.1 · 6,884–6,956 bp · −
trnS-GCU · PX260186.1 · 8,087–8,174 bp · −
atpA · PX260186.1 · 9,997–11,520 bp · −
atpF · PX260186.1 · 11,626–12,829 bp · −
atpH · PX260186.1 · 13,199–13,444 bp · −
atpI · PX260186.1 · 14,251–14,994 bp · −
rps2 · PX260186.1 · 15,219–15,929 bp · −
rpoC2 · PX260186.1 · 16,300–20,349 bp · −
rpoC1 · PX260186.1 · 20,504–23,314 bp · −
rpoB · PX260186.1 · 23,341–26,553 bp · −
psbM · PX260186.1 · 29,136–29,240 bp · −
trnD-GUC · PX260186.1 · 29,763–29,836 bp · −
trnY-GUA · PX260186.1 · 29,952–30,035 bp · −
trnE-UUC · PX260186.1 · 30,087–30,159 bp · −
trnS-UGA · PX260186.1 · 34,546–34,638 bp · −
trnfM-CAU · PX260186.1 · 35,587–35,660 bp · −
rps14 · PX260186.1 · 35,810–36,112 bp · −
psaB · PX260186.1 · 36,245–38,449 bp · −
psaA · PX260186.1 · 38,475–40,727 bp · −
ycf3 · PX260186.1 · 41,466–43,406 bp · −
rps4 · PX260186.1 · 43,953–44,558 bp · −
trnT-UGU · PX260186.1 · 44,979–45,051 bp · −
ndhJ · PX260186.1 · 47,222–47,716 bp · −
ndhK · PX260186.1 · 47,799–48,476 bp · −
ndhC · PX260186.1 · 48,530–48,892 bp · −
trnV-UAC · PX260186.1 · 49,841–50,493 bp · −
atpE · PX260186.1 · 50,967–51,368 bp · −
atpB · PX260186.1 · 51,389–52,861 bp · −
psbJ · PX260186.1 · 61,983–62,105 bp · −
psbL · PX260186.1 · 62,243–62,359 bp · −
psbF · PX260186.1 · 62,383–62,502 bp · −
psbE · PX260186.1 · 62,517–62,768 bp · −
trnW-CCA · PX260186.1 · 64,199–64,272 bp · −
trnP-UGG · PX260186.1 · 64,447–64,520 bp · −
rpl20 · PX260186.1 · 66,269–66,655 bp · −
rps12 · PX260186.1 · 67,398–67,511 bp · −
rps12 · PX260186.1 · 94,762–95,555 bp · −
clpP · PX260186.1 · 67,637–69,508 bp · −
psbN · PX260186.1 · 71,846–71,977 bp · −
rpoA · PX260186.1 · 75,372–76,385 bp · −
rps11 · PX260186.1 · 76,457–76,888 bp · −
rpl36 · PX260186.1 · 76,976–77,089 bp · −
infA · PX260186.1 · 77,185–77,418 bp · −
rps8 · PX260186.1 · 77,542–77,955 bp · −
rpl14 · PX260186.1 · 78,123–78,491 bp · −
rpl16 · PX260186.1 · 78,618–79,927 bp · −
rps3 · PX260186.1 · 80,080–80,742 bp · −
rpl22 · PX260186.1 · 80,727–81,191 bp · −
rps19 · PX260186.1 · 81,255–81,533 bp · −
rpl2 · PX260186.1 · 81,585–83,076 bp · −
rpl23 · PX260186.1 · 83,095–83,376 bp · −
trnI-CAU · PX260186.1 · 83,550–83,623 bp · −
trnL-CAA · PX260186.1 · 91,130–91,210 bp · −
ndhB · PX260186.1 · 91,755–93,966 bp · −
rps7 · PX260186.1 · 94,241–94,708 bp · −
trnN-GUU · PX260186.1 · 105,637–105,708 bp · −
ndhF · PX260186.1 · 107,098–109,326 bp · −
ndhD · PX260186.1 · 111,952–113,472 bp · −
psaC · PX260186.1 · 113,577–113,822 bp · −
ndhE · PX260186.1 · 114,074–114,379 bp · −
ndhG · PX260186.1 · 114,589–115,119 bp · −
ndhI · PX260186.1 · 115,478–115,984 bp · −
ndhA · PX260186.1 · 116,064–118,219 bp · −
ndhH · PX260186.1 · 118,221–119,402 bp · −
rps15 · PX260186.1 · 119,503–119,775 bp · −
ycf1 · PX260186.1 · 120,168–125,696 bp · −
trnR-ACG · PX260186.1 · 126,654–126,727 bp · −
rrn5 · PX260186.1 · 126,962–127,082 bp · −
rrn4.5 · PX260186.1 · 127,338–127,440 bp · −
rrn23 · PX260186.1 · 127,539–130,348 bp · −
trnA-UGC · PX260186.1 · 130,541–131,419 bp · −
trnI-GAU · PX260186.1 · 131,484–132,493 bp · −
rrn16 · PX260186.1 · 132,783–134,273 bp · −
trnV-GAC · PX260186.1 · 134,501–134,572 bp · −
ycf15 · PX260186.1 · 140,861–141,124 bp · −
ycf2 · PX260186.1 · 141,152–148,018 bp · −
psbK · PX260186.1 · 7,291–7,476 bp · +
psbI · PX260186.1 · 7,855–7,965 bp · +
trnG-UCC · PX260186.1 · 8,884–9,642 bp · +
trnR-UCU · PX260186.1 · 9,826–9,900 bp · +
trnC-GCA · PX260186.1 · 27,652–27,727 bp · +
petN · PX260186.1 · 28,562–28,651 bp · +
trnT-GGU · PX260186.1 · 30,730–30,800 bp · +
psbD · PX260186.1 · 31,886–32,947 bp · +
psbC · PX260186.1 · 32,895–34,316 bp · +
psbZ · PX260186.1 · 34,965–35,153 bp · +
trnG-GCC · PX260186.1 · 35,377–35,447 bp · +
trnS-GGA · PX260186.1 · 43,712–43,798 bp · +
trnL-UAA · PX260186.1 · 45,725–46,298 bp · +
trnF-GAA · PX260186.1 · 46,479–46,551 bp · +
trnM-CAU · PX260186.1 · 50,682–50,754 bp · +
rbcL · PX260186.1 · 53,637–55,103 bp · +
accD · PX260186.1 · 55,787–57,244 bp · +
psaI · PX260186.1 · 57,652–57,762 bp · +
ycf4 · PX260186.1 · 58,201–58,755 bp · +
cemA · PX260186.1 · 59,068–59,757 bp · +
petA · PX260186.1 · 59,974–60,936 bp · +
petL · PX260186.1 · 63,690–63,785 bp · +
petG · PX260186.1 · 63,960–64,073 bp · +
psaJ · PX260186.1 · 64,795–64,929 bp · +
rpl33 · PX260186.1 · 65,407–65,607 bp · +
rps18 · PX260186.1 · 65,720–66,058 bp · +
rps12 · PX260186.1 · 136,175–136,968 bp · +
psbB · PX260186.1 · 69,951–71,477 bp · +
psbT · PX260186.1 · 71,671–71,772 bp · +
psbH · PX260186.1 · 72,081–72,302 bp · +
petB · PX260186.1 · 72,423–73,802 bp · +
petD · PX260186.1 · 73,997–75,209 bp · +
ycf2 · PX260186.1 · 83,712–90,578 bp · +
trnV-GAC · PX260186.1 · 97,158–97,229 bp · +
rrn16 · PX260186.1 · 97,457–98,947 bp · +
trnI-GAU · PX260186.1 · 99,237–100,246 bp · +
trnA-UGC · PX260186.1 · 100,311–101,189 bp · +
rrn23 · PX260186.1 · 101,382–104,191 bp · +
rrn4.5 · PX260186.1 · 104,290–104,392 bp · +
rrn5 · PX260186.1 · 104,648–104,768 bp · +
trnR-ACG · PX260186.1 · 105,003–105,076 bp · +
rpl32 · PX260186.1 · 109,761–109,937 bp · +
trnL-UAG · PX260186.1 · 110,632–110,711 bp · +
ccsA · PX260186.1 · 110,798–111,769 bp · +
trnN-GUU · PX260186.1 · 126,022–126,093 bp · +
rps7 · PX260186.1 · 137,022–137,489 bp · +
ndhB · PX260186.1 · 137,764–139,975 bp · +
trnL-CAA · PX260186.1 · 140,520–140,600 bp · +
trnI-CAU · PX260186.1 · 148,107–148,180 bp · +
rpl23 · PX260186.1 · 148,354–148,635 bp · +
rpl2 · PX260186.1 · 148,654–150,145 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Stachys germanica
ANNOTATED PLASTOME
PX260186.1
150,238 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37560 75119 112678 150238 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 508 1566 1059 Locate
trnK-UUU gene − 1799 4375 2577 Locate
matK gene − 2098 3627 1530 Locate
rps16 gene − 5056 6182 1127 Locate
trnQ-UUG gene − 6884 6956 73 Locate
psbK gene + 7291 7476 186 Locate
psbI gene + 7855 7965 111 Locate
trnS-GCU gene − 8087 8174 88 Locate
trnG-UCC gene + 8884 9642 759 Locate
trnR-UCU gene + 9826 9900 75 Locate
atpA gene − 9997 11520 1524 Locate
atpF gene − 11626 12829 1204 Locate
atpH gene − 13199 13444 246 Locate
atpI gene − 14251 14994 744 Locate
rps2 gene − 15219 15929 711 Locate
rpoC2 gene − 16300 20349 4050 Locate
rpoC1 gene − 20504 23314 2811 Locate
rpoB gene − 23341 26553 3213 Locate
trnC-GCA gene + 27652 27727 76 Locate
petN gene + 28562 28651 90 Locate
psbM gene − 29136 29240 105 Locate
trnD-GUC gene − 29763 29836 74 Locate
trnY-GUA gene − 29952 30035 84 Locate
trnE-UUC gene − 30087 30159 73 Locate
trnT-GGU gene + 30730 30800 71 Locate
psbD gene + 31886 32947 1062 Locate
psbC gene + 32895 34316 1422 Locate
trnS-UGA gene − 34546 34638 93 Locate
psbZ gene + 34965 35153 189 Locate
trnG-GCC gene + 35377 35447 71 Locate
trnfM-CAU gene − 35587 35660 74 Locate
rps14 gene − 35810 36112 303 Locate
psaB gene − 36245 38449 2205 Locate
psaA gene − 38475 40727 2253 Locate
ycf3 gene − 41466 43406 1941 Locate
trnS-GGA gene + 43712 43798 87 Locate
rps4 gene − 43953 44558 606 Locate
trnT-UGU gene − 44979 45051 73 Locate
trnL-UAA gene + 45725 46298 574 Locate
trnF-GAA gene + 46479 46551 73 Locate
ndhJ gene − 47222 47716 495 Locate
ndhK gene − 47799 48476 678 Locate
ndhC gene − 48530 48892 363 Locate
trnV-UAC gene − 49841 50493 653 Locate
trnM-CAU gene + 50682 50754 73 Locate
atpE gene − 50967 51368 402 Locate
atpB gene − 51389 52861 1473 Locate
rbcL gene + 53637 55103 1467 Locate
accD gene + 55787 57244 1458 Locate
psaI gene + 57652 57762 111 Locate
ycf4 gene + 58201 58755 555 Locate
cemA gene + 59068 59757 690 Locate
petA gene + 59974 60936 963 Locate
psbJ gene − 61983 62105 123 Locate
psbL gene − 62243 62359 117 Locate
psbF gene − 62383 62502 120 Locate
psbE gene − 62517 62768 252 Locate
petL gene + 63690 63785 96 Locate
petG gene + 63960 64073 114 Locate
trnW-CCA gene − 64199 64272 74 Locate
trnP-UGG gene − 64447 64520 74 Locate
psaJ gene + 64795 64929 135 Locate
rpl33 gene + 65407 65607 201 Locate
rps18 gene + 65720 66058 339 Locate
rpl20 gene − 66269 66655 387 Locate
rps12 gene − 67398 67511 114 Locate
clpP gene − 67637 69508 1872 Locate
psbB gene + 69951 71477 1527 Locate
psbT gene + 71671 71772 102 Locate
psbN gene − 71846 71977 132 Locate
psbH gene + 72081 72302 222 Locate
petB gene + 72423 73802 1380 Locate
petD gene + 73997 75209 1213 Locate
rpoA gene − 75372 76385 1014 Locate
rps11 gene − 76457 76888 432 Locate
rpl36 gene − 76976 77089 114 Locate
infA gene − 77185 77418 234 Locate
rps8 gene − 77542 77955 414 Locate
rpl14 gene − 78123 78491 369 Locate
rpl16 gene − 78618 79927 1310 Locate
rps3 gene − 80080 80742 663 Locate
rpl22 gene − 80727 81191 465 Locate
rps19 gene − 81255 81533 279 Locate
rpl2 gene − 81585 83076 1492 Locate
rpl23 gene − 83095 83376 282 Locate
trnI-CAU gene − 83550 83623 74 Locate
ycf2 gene + 83712 90578 6867 Locate
trnL-CAA gene − 91130 91210 81 Locate
ndhB gene − 91755 93966 2212 Locate
rps7 gene − 94241 94708 468 Locate
rps12 gene − 94762 95555 794 Locate
trnV-GAC gene + 97158 97229 72 Locate
rrn16 gene + 97457 98947 1491 Locate
trnI-GAU gene + 99237 100246 1010 Locate
trnA-UGC gene + 100311 101189 879 Locate
rrn23 gene + 101382 104191 2810 Locate
rrn4.5 gene + 104290 104392 103 Locate
rrn5 gene + 104648 104768 121 Locate
trnR-ACG gene + 105003 105076 74 Locate
trnN-GUU gene − 105637 105708 72 Locate
ndhF gene − 107098 109326 2229 Locate
rpl32 gene + 109761 109937 177 Locate
trnL-UAG gene + 110632 110711 80 Locate
ccsA gene + 110798 111769 972 Locate
ndhD gene − 111952 113472 1521 Locate
psaC gene − 113577 113822 246 Locate
ndhE gene − 114074 114379 306 Locate
ndhG gene − 114589 115119 531 Locate
ndhI gene − 115478 115984 507 Locate
ndhA gene − 116064 118219 2156 Locate
ndhH gene − 118221 119402 1182 Locate
rps15 gene − 119503 119775 273 Locate
ycf1 gene − 120168 125696 5529 Locate
trnN-GUU gene + 126022 126093 72 Locate
trnR-ACG gene − 126654 126727 74 Locate
rrn5 gene − 126962 127082 121 Locate
rrn4.5 gene − 127338 127440 103 Locate
rrn23 gene − 127539 130348 2810 Locate
trnA-UGC gene − 130541 131419 879 Locate
trnI-GAU gene − 131484 132493 1010 Locate
rrn16 gene − 132783 134273 1491 Locate
trnV-GAC gene − 134501 134572 72 Locate
rps12 gene + 136175 136968 794 Locate
rps7 gene + 137022 137489 468 Locate
ndhB gene + 137764 139975 2212 Locate
trnL-CAA gene + 140520 140600 81 Locate
ycf15 gene − 140861 141124 264 Locate
ycf2 gene − 141152 148018 6867 Locate
trnI-CAU gene + 148107 148180 74 Locate
rpl23 gene + 148354 148635 282 Locate
rpl2 gene + 148654 150145 1492 Locate
Status Available
Accession PX260186.1
Length 150,238 bp
GC content 38.6%
Annotated genes 131
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 13 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources