Coordinate-aware organelle record

Stachys japonica chloroplast genome

Available MT554703.1 150,599 bp 123 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

123 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	0	75	75
psbA	gene	photosystem-ii	−	402	1461	1059
trnK-UUU	gene	translation-rna	−	1695	4276	2581
matK	gene	other	−	1994	3524	1530
rps16	gene	ribosomal-protein	−	4930	6071	1141
trnQ-UUG	gene	translation-rna	−	6896	6968	72
psbK	gene	photosystem-ii	+	7304	7490	186
psbI	gene	photosystem-ii	+	7865	7976	111
trnS-GCU	gene	translation-rna	−	8097	8185	88
trnG-UCC	gene	translation-rna	+	8863	9623	760
trnR-UCU	gene	translation-rna	+	9783	9855	72
atpA	gene	atp-synthase	−	9951	11475	1524
atpF	gene	atp-synthase	−	11562	12774	1212
atpH	gene	atp-synthase	−	13140	13386	246
atpI	gene	atp-synthase	−	14341	15085	744
rps2	gene	ribosomal-protein	−	15315	16026	711
rpoC1	gene	rna-polymerase	−	20599	23436	2837
rpoB	gene	rna-polymerase	−	23462	26675	3213
trnC-GCA	gene	translation-rna	+	27776	27847	71
petN	gene	cytochrome	+	28681	28771	90
psbM	gene	photosystem-ii	−	29273	29378	105
trnD-GUC	gene	translation-rna	−	29896	29970	74
trnY-GUA	gene	translation-rna	−	30085	30169	84
trnE-UUC	gene	translation-rna	−	30228	30301	73
trnT-GGU	gene	translation-rna	+	30871	30943	72
psbD	gene	photosystem-ii	+	32013	33075	1062
psbC	gene	photosystem-ii	+	33022	34444	1422
trnS-UGA	gene	translation-rna	−	34672	34765	93
psbZ	gene	photosystem-ii	+	35092	35281	189
trnG-GCC	gene	translation-rna	+	35506	35577	71
trnfM-CAU	gene	translation-rna	−	35724	35798	74
rps14	gene	ribosomal-protein	−	35947	36250	303
psaB	gene	photosystem-i	−	36385	38590	2205
psaA	gene	photosystem-i	−	38615	40868	2253
ycf3	gene	other	−	41617	43560	1943
trnS-GGA	gene	translation-rna	+	43876	43963	87
rps4	gene	ribosomal-protein	−	44110	44716	606
trnT-UGU	gene	translation-rna	−	45101	45174	73
trnL-UAA	gene	translation-rna	+	45858	46432	574
trnF-GAA	gene	translation-rna	+	46727	46800	73
ndhJ	gene	nad-dehydrogenase	−	47459	47936	477
ndhK	gene	nad-dehydrogenase	−	48036	48714	678
ndhC	gene	nad-dehydrogenase	−	48767	49130	363
trnV-UAC	gene	translation-rna	−	50067	50720	653
trnM-CAU	gene	translation-rna	+	50908	50981	73
atpE	gene	atp-synthase	−	51194	51596	402
atpB	gene	atp-synthase	−	51592	53089	1497
rbcL	gene	other	+	53900	55346	1446
accD	gene	other	+	56046	57513	1467
psaI	gene	photosystem-i	+	57910	58021	111
ycf4	gene	other	+	58455	59010	555
cemA	gene	other	+	59316	60006	690
petA	gene	cytochrome	+	60229	61192	963
psbJ	gene	photosystem-ii	−	62235	62358	123
psbL	gene	photosystem-ii	−	62495	62612	117
psbF	gene	photosystem-ii	−	62635	62755	120
psbE	gene	photosystem-ii	−	62769	63021	252
petL	gene	cytochrome	+	63941	64037	96
petG	gene	cytochrome	+	64211	64325	114
trnW-CCA	gene	translation-rna	−	64450	64524	74
trnP-UGG	gene	translation-rna	−	64693	64767	74
psaJ	gene	photosystem-i	+	65039	65174	135
rpl33	gene	ribosomal-protein	+	65654	65855	201
rps18	gene	ribosomal-protein	+	66000	66306	306
rpl20	gene	ribosomal-protein	−	66522	66909	387
rps12	gene	ribosomal-protein	−	67648	95765	28117
rps12	gene	ribosomal-protein	+	67648	137327	69679
clpP	gene	other	−	67887	69743	1856
psbB	gene	photosystem-ii	+	70180	71707	1527
psbT	gene	photosystem-ii	+	71891	72002	111
psbN	gene	photosystem-ii	−	72075	72207	132
psbH	gene	photosystem-ii	+	72310	72532	222
petB	gene	cytochrome	+	72656	74029	1373
petD	gene	cytochrome	+	74223	75433	1210
rpoA	gene	rna-polymerase	−	75595	76609	1014
rps11	gene	ribosomal-protein	−	76680	77097	417
rpl36	gene	ribosomal-protein	−	77199	77313	114
infA	gene	other	−	77408	77642	234
rps8	gene	ribosomal-protein	−	77765	78179	414
rpl14	gene	ribosomal-protein	−	78346	78715	369
rpl16	gene	ribosomal-protein	−	78841	80135	1294
rps3	gene	ribosomal-protein	−	80288	80951	663
rpl22	gene	ribosomal-protein	−	80935	81400	465
rps19	gene	ribosomal-protein	−	81463	81742	279
rpl2	gene	ribosomal-protein	−	81793	83285	1492
rpl23	gene	ribosomal-protein	−	83303	83585	282
trnI-CAU	gene	translation-rna	−	83758	83832	74
ycf2	gene	other	+	83920	90787	6867
ycf15	gene	other	+	90829	91078	249
trnL-CAA	gene	translation-rna	−	91338	91419	81
ndhB	gene	nad-dehydrogenase	−	91964	94176	2212
rps7	gene	ribosomal-protein	−	94450	94918	468
trnV-GAC	gene	translation-rna	+	97376	97448	72
trnI-GAU	gene	translation-rna	+	99459	100468	1009
trnA-UGC	gene	translation-rna	+	100532	101411	879
trnR-ACG	gene	translation-rna	+	105224	105298	74
trnN-GUU	gene	translation-rna	−	105865	105937	72
ndhF	gene	nad-dehydrogenase	−	107326	109561	2235
rpl32	gene	ribosomal-protein	+	110050	110227	177
trnL-UAG	gene	translation-rna	+	110966	111046	80
ccsA	gene	other	+	111133	112105	972
ndhD	gene	nad-dehydrogenase	−	112286	113807	1521
psaC	gene	photosystem-i	−	113910	114156	246
ndhE	gene	nad-dehydrogenase	−	114407	114713	306
ndhG	gene	nad-dehydrogenase	−	114922	115453	531
ndhI	gene	nad-dehydrogenase	−	115828	116335	507
ndhA	gene	nad-dehydrogenase	−	116414	118526	2112
ndhH	gene	nad-dehydrogenase	−	118527	119709	1182
rps15	gene	ribosomal-protein	−	119809	120082	273
ycf1	gene	other	−	120471	126036	5565
trnN-GUU	gene	translation-rna	+	126361	126433	72
trnR-ACG	gene	translation-rna	−	127000	127074	74
trnA-UGC	gene	translation-rna	−	130887	131766	879
trnI-GAU	gene	translation-rna	−	131830	132839	1009
trnV-GAC	gene	translation-rna	−	134850	134922	72
rps7	gene	ribosomal-protein	+	137380	137848	468
ndhB	gene	nad-dehydrogenase	+	138122	140334	2212
trnL-CAA	gene	translation-rna	+	140879	140960	81
ycf15	gene	other	−	141220	141469	249
ycf2	gene	other	−	141511	148378	6867
trnI-CAU	gene	translation-rna	+	148466	148540	74
rpl23	gene	ribosomal-protein	+	148713	148995	282
rpl2	gene	ribosomal-protein	+	149013	150505	1492

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomeMT554703.1DNA · accDMT554703DNA · atpBMT554703DNA · matKMT554703DNA · ndhFMT554703DNA · psbAMT554703DNA · rbcLMT554703DNA · rps12MT554703DNA · ycf1MT554703