Stachys japonica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · MT554703.1 · 1–75 bp · −
psbA · MT554703.1 · 403–1,461 bp · −
trnK-UUU · MT554703.1 · 1,696–4,276 bp · −
matK · MT554703.1 · 1,995–3,524 bp · −
rps16 · MT554703.1 · 4,931–6,071 bp · −
trnQ-UUG · MT554703.1 · 6,897–6,968 bp · −
trnS-GCU · MT554703.1 · 8,098–8,185 bp · −
atpA · MT554703.1 · 9,952–11,475 bp · −
atpF · MT554703.1 · 11,563–12,774 bp · −
atpH · MT554703.1 · 13,141–13,386 bp · −
atpI · MT554703.1 · 14,342–15,085 bp · −
rps2 · MT554703.1 · 15,316–16,026 bp · −
rpoC1 · MT554703.1 · 20,600–23,436 bp · −
rpoB · MT554703.1 · 23,463–26,675 bp · −
psbM · MT554703.1 · 29,274–29,378 bp · −
trnD-GUC · MT554703.1 · 29,897–29,970 bp · −
trnY-GUA · MT554703.1 · 30,086–30,169 bp · −
trnE-UUC · MT554703.1 · 30,229–30,301 bp · −
trnS-UGA · MT554703.1 · 34,673–34,765 bp · −
trnfM-CAU · MT554703.1 · 35,725–35,798 bp · −
rps14 · MT554703.1 · 35,948–36,250 bp · −
psaB · MT554703.1 · 36,386–38,590 bp · −
psaA · MT554703.1 · 38,616–40,868 bp · −
ycf3 · MT554703.1 · 41,618–43,560 bp · −
rps4 · MT554703.1 · 44,111–44,716 bp · −
trnT-UGU · MT554703.1 · 45,102–45,174 bp · −
ndhJ · MT554703.1 · 47,460–47,936 bp · −
ndhK · MT554703.1 · 48,037–48,714 bp · −
ndhC · MT554703.1 · 48,768–49,130 bp · −
trnV-UAC · MT554703.1 · 50,068–50,720 bp · −
atpE · MT554703.1 · 51,195–51,596 bp · −
atpB · MT554703.1 · 51,593–53,089 bp · −
psbJ · MT554703.1 · 62,236–62,358 bp · −
psbL · MT554703.1 · 62,496–62,612 bp · −
psbF · MT554703.1 · 62,636–62,755 bp · −
psbE · MT554703.1 · 62,770–63,021 bp · −
trnW-CCA · MT554703.1 · 64,451–64,524 bp · −
trnP-UGG · MT554703.1 · 64,694–64,767 bp · −
rpl20 · MT554703.1 · 66,523–66,909 bp · −
rps12 · MT554703.1 · 67,649–67,762 bp · −
rps12 · MT554703.1 · 94,972–95,765 bp · −
clpP · MT554703.1 · 67,888–69,743 bp · −
psbN · MT554703.1 · 72,076–72,207 bp · −
rpoA · MT554703.1 · 75,596–76,609 bp · −
rps11 · MT554703.1 · 76,681–77,097 bp · −
rpl36 · MT554703.1 · 77,200–77,313 bp · −
infA · MT554703.1 · 77,409–77,642 bp · −
rps8 · MT554703.1 · 77,766–78,179 bp · −
rpl14 · MT554703.1 · 78,347–78,715 bp · −
rpl16 · MT554703.1 · 78,842–80,135 bp · −
rps3 · MT554703.1 · 80,289–80,951 bp · −
rpl22 · MT554703.1 · 80,936–81,400 bp · −
rps19 · MT554703.1 · 81,464–81,742 bp · −
rpl2 · MT554703.1 · 81,794–83,285 bp · −
rpl23 · MT554703.1 · 83,304–83,585 bp · −
trnI-CAU · MT554703.1 · 83,759–83,832 bp · −
trnL-CAA · MT554703.1 · 91,339–91,419 bp · −
ndhB · MT554703.1 · 91,965–94,176 bp · −
rps7 · MT554703.1 · 94,451–94,918 bp · −
trnN-GUU · MT554703.1 · 105,866–105,937 bp · −
ndhF · MT554703.1 · 107,327–109,561 bp · −
ndhD · MT554703.1 · 112,287–113,807 bp · −
psaC · MT554703.1 · 113,911–114,156 bp · −
ndhE · MT554703.1 · 114,408–114,713 bp · −
ndhG · MT554703.1 · 114,923–115,453 bp · −
ndhI · MT554703.1 · 115,829–116,335 bp · −
ndhA · MT554703.1 · 116,415–118,526 bp · −
ndhH · MT554703.1 · 118,528–119,709 bp · −
rps15 · MT554703.1 · 119,810–120,082 bp · −
ycf1 · MT554703.1 · 120,472–126,036 bp · −
trnR-ACG · MT554703.1 · 127,001–127,074 bp · −
trnA-UGC · MT554703.1 · 130,888–131,766 bp · −
trnI-GAU · MT554703.1 · 131,831–132,839 bp · −
trnV-GAC · MT554703.1 · 134,851–134,922 bp · −
ycf15 · MT554703.1 · 141,221–141,469 bp · −
ycf2 · MT554703.1 · 141,512–148,378 bp · −
psbK · MT554703.1 · 7,305–7,490 bp · +
psbI · MT554703.1 · 7,866–7,976 bp · +
trnG-UCC · MT554703.1 · 8,864–9,623 bp · +
trnR-UCU · MT554703.1 · 9,784–9,855 bp · +
trnC-GCA · MT554703.1 · 27,777–27,847 bp · +
petN · MT554703.1 · 28,682–28,771 bp · +
trnT-GGU · MT554703.1 · 30,872–30,943 bp · +
psbD · MT554703.1 · 32,014–33,075 bp · +
psbC · MT554703.1 · 33,023–34,444 bp · +
psbZ · MT554703.1 · 35,093–35,281 bp · +
trnG-GCC · MT554703.1 · 35,507–35,577 bp · +
trnS-GGA · MT554703.1 · 43,877–43,963 bp · +
trnL-UAA · MT554703.1 · 45,859–46,432 bp · +
trnF-GAA · MT554703.1 · 46,728–46,800 bp · +
trnM-CAU · MT554703.1 · 50,909–50,981 bp · +
rbcL · MT554703.1 · 53,901–55,346 bp · +
accD · MT554703.1 · 56,047–57,513 bp · +
psaI · MT554703.1 · 57,911–58,021 bp · +
ycf4 · MT554703.1 · 58,456–59,010 bp · +
cemA · MT554703.1 · 59,317–60,006 bp · +
petA · MT554703.1 · 60,230–61,192 bp · +
petL · MT554703.1 · 63,942–64,037 bp · +
petG · MT554703.1 · 64,212–64,325 bp · +
psaJ · MT554703.1 · 65,040–65,174 bp · +
rpl33 · MT554703.1 · 65,655–65,855 bp · +
rps18 · MT554703.1 · 66,001–66,306 bp · +
rps12 · MT554703.1 · 136,534–137,327 bp · +
psbB · MT554703.1 · 70,181–71,707 bp · +
psbT · MT554703.1 · 71,892–72,002 bp · +
psbH · MT554703.1 · 72,311–72,532 bp · +
petB · MT554703.1 · 72,657–74,029 bp · +
petD · MT554703.1 · 74,224–75,433 bp · +
ycf2 · MT554703.1 · 83,921–90,787 bp · +
ycf15 · MT554703.1 · 90,830–91,078 bp · +
trnV-GAC · MT554703.1 · 97,377–97,448 bp · +
trnI-GAU · MT554703.1 · 99,460–100,468 bp · +
trnA-UGC · MT554703.1 · 100,533–101,411 bp · +
trnR-ACG · MT554703.1 · 105,225–105,298 bp · +
rpl32 · MT554703.1 · 110,051–110,227 bp · +
trnL-UAG · MT554703.1 · 110,967–111,046 bp · +
ccsA · MT554703.1 · 111,134–112,105 bp · +
trnN-GUU · MT554703.1 · 126,362–126,433 bp · +
rps7 · MT554703.1 · 137,381–137,848 bp · +
ndhB · MT554703.1 · 138,123–140,334 bp · +
trnL-CAA · MT554703.1 · 140,880–140,960 bp · +
trnI-CAU · MT554703.1 · 148,467–148,540 bp · +
rpl23 · MT554703.1 · 148,714–148,995 bp · +
rpl2 · MT554703.1 · 149,014–150,505 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Stachys japonica
ANNOTATED PLASTOME
MT554703.1
150,599 bp · 123 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
0 37650 75300 112949 150599 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC trnI-GAU trnA-UGC trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG trnA-UGC trnI-GAU trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
124 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 75 75 Locate
psbA gene − 403 1461 1059 Locate
trnK-UUU gene − 1696 4276 2581 Locate
matK gene − 1995 3524 1530 Locate
rps16 gene − 4931 6071 1141 Locate
trnQ-UUG gene − 6897 6968 72 Locate
psbK gene + 7305 7490 186 Locate
psbI gene + 7866 7976 111 Locate
trnS-GCU gene − 8098 8185 88 Locate
trnG-UCC gene + 8864 9623 760 Locate
trnR-UCU gene + 9784 9855 72 Locate
atpA gene − 9952 11475 1524 Locate
atpF gene − 11563 12774 1212 Locate
atpH gene − 13141 13386 246 Locate
atpI gene − 14342 15085 744 Locate
rps2 gene − 15316 16026 711 Locate
rpoC1 gene − 20600 23436 2837 Locate
rpoB gene − 23463 26675 3213 Locate
trnC-GCA gene + 27777 27847 71 Locate
petN gene + 28682 28771 90 Locate
psbM gene − 29274 29378 105 Locate
trnD-GUC gene − 29897 29970 74 Locate
trnY-GUA gene − 30086 30169 84 Locate
trnE-UUC gene − 30229 30301 73 Locate
trnT-GGU gene + 30872 30943 72 Locate
psbD gene + 32014 33075 1062 Locate
psbC gene + 33023 34444 1422 Locate
trnS-UGA gene − 34673 34765 93 Locate
psbZ gene + 35093 35281 189 Locate
trnG-GCC gene + 35507 35577 71 Locate
trnfM-CAU gene − 35725 35798 74 Locate
rps14 gene − 35948 36250 303 Locate
psaB gene − 36386 38590 2205 Locate
psaA gene − 38616 40868 2253 Locate
ycf3 gene − 41618 43560 1943 Locate
trnS-GGA gene + 43877 43963 87 Locate
rps4 gene − 44111 44716 606 Locate
trnT-UGU gene − 45102 45174 73 Locate
trnL-UAA gene + 45859 46432 574 Locate
trnF-GAA gene + 46728 46800 73 Locate
ndhJ gene − 47460 47936 477 Locate
ndhK gene − 48037 48714 678 Locate
ndhC gene − 48768 49130 363 Locate
trnV-UAC gene − 50068 50720 653 Locate
trnM-CAU gene + 50909 50981 73 Locate
atpE gene − 51195 51596 402 Locate
atpB gene − 51593 53089 1497 Locate
rbcL gene + 53901 55346 1446 Locate
accD gene + 56047 57513 1467 Locate
psaI gene + 57911 58021 111 Locate
ycf4 gene + 58456 59010 555 Locate
cemA gene + 59317 60006 690 Locate
petA gene + 60230 61192 963 Locate
psbJ gene − 62236 62358 123 Locate
psbL gene − 62496 62612 117 Locate
psbF gene − 62636 62755 120 Locate
psbE gene − 62770 63021 252 Locate
petL gene + 63942 64037 96 Locate
petG gene + 64212 64325 114 Locate
trnW-CCA gene − 64451 64524 74 Locate
trnP-UGG gene − 64694 64767 74 Locate
psaJ gene + 65040 65174 135 Locate
rpl33 gene + 65655 65855 201 Locate
rps18 gene + 66001 66306 306 Locate
rpl20 gene − 66523 66909 387 Locate
rps12 gene − 67649 67762 114 Locate
clpP gene − 67888 69743 1856 Locate
psbB gene + 70181 71707 1527 Locate
psbT gene + 71892 72002 111 Locate
psbN gene − 72076 72207 132 Locate
psbH gene + 72311 72532 222 Locate
petB gene + 72657 74029 1373 Locate
petD gene + 74224 75433 1210 Locate
rpoA gene − 75596 76609 1014 Locate
rps11 gene − 76681 77097 417 Locate
rpl36 gene − 77200 77313 114 Locate
infA gene − 77409 77642 234 Locate
rps8 gene − 77766 78179 414 Locate
rpl14 gene − 78347 78715 369 Locate
rpl16 gene − 78842 80135 1294 Locate
rps3 gene − 80289 80951 663 Locate
rpl22 gene − 80936 81400 465 Locate
rps19 gene − 81464 81742 279 Locate
rpl2 gene − 81794 83285 1492 Locate
rpl23 gene − 83304 83585 282 Locate
trnI-CAU gene − 83759 83832 74 Locate
ycf2 gene + 83921 90787 6867 Locate
ycf15 gene + 90830 91078 249 Locate
trnL-CAA gene − 91339 91419 81 Locate
ndhB gene − 91965 94176 2212 Locate
rps7 gene − 94451 94918 468 Locate
rps12 gene − 94972 95765 794 Locate
trnV-GAC gene + 97377 97448 72 Locate
trnI-GAU gene + 99460 100468 1009 Locate
trnA-UGC gene + 100533 101411 879 Locate
trnR-ACG gene + 105225 105298 74 Locate
trnN-GUU gene − 105866 105937 72 Locate
ndhF gene − 107327 109561 2235 Locate
rpl32 gene + 110051 110227 177 Locate
trnL-UAG gene + 110967 111046 80 Locate
ccsA gene + 111134 112105 972 Locate
ndhD gene − 112287 113807 1521 Locate
psaC gene − 113911 114156 246 Locate
ndhE gene − 114408 114713 306 Locate
ndhG gene − 114923 115453 531 Locate
ndhI gene − 115829 116335 507 Locate
ndhA gene − 116415 118526 2112 Locate
ndhH gene − 118528 119709 1182 Locate
rps15 gene − 119810 120082 273 Locate
ycf1 gene − 120472 126036 5565 Locate
trnN-GUU gene + 126362 126433 72 Locate
trnR-ACG gene − 127001 127074 74 Locate
trnA-UGC gene − 130888 131766 879 Locate
trnI-GAU gene − 131831 132839 1009 Locate
trnV-GAC gene − 134851 134922 72 Locate
rps12 gene + 136534 137327 794 Locate
rps7 gene + 137381 137848 468 Locate
ndhB gene + 138123 140334 2212 Locate
trnL-CAA gene + 140880 140960 81 Locate
ycf15 gene − 141221 141469 249 Locate
ycf2 gene − 141512 148378 6867 Locate
trnI-CAU gene + 148467 148540 74 Locate
rpl23 gene + 148714 148995 282 Locate
rpl2 gene + 149014 150505 1492 Locate
Status Available
Accession MT554703.1
Length 150,599 bp
GC content 38.5%
Annotated genes 123
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 3 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources