Stachys sylvatica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_029824.1 · 1–75 bp · −
psbA · NC_029824.1 · 396–1,454 bp · −
trnK-UUU · NC_029824.1 · 1,689–4,259 bp · −
matK · NC_029824.1 · 1,988–3,517 bp · −
rps16 · NC_029824.1 · 4,909–6,049 bp · −
trnQ-UUG · NC_029824.1 · 6,875–6,946 bp · −
trnS-GCU · NC_029824.1 · 8,076–8,163 bp · −
atpA · NC_029824.1 · 9,930–11,453 bp · −
atpF · NC_029824.1 · 11,541–12,753 bp · −
atpH · NC_029824.1 · 13,119–13,364 bp · −
atpI · NC_029824.1 · 14,320–15,063 bp · −
rps2 · NC_029824.1 · 15,294–16,004 bp · −
rpoC2 · NC_029824.1 · 16,342–20,424 bp · −
rpoC1 · NC_029824.1 · 20,579–23,415 bp · −
rpoB · NC_029824.1 · 23,442–26,654 bp · −
psbM · NC_029824.1 · 29,252–29,356 bp · −
trnD-GUC · NC_029824.1 · 29,875–29,948 bp · −
trnY-GUA · NC_029824.1 · 30,064–30,147 bp · −
trnE-UUC · NC_029824.1 · 30,207–30,279 bp · −
trnS-UGA · NC_029824.1 · 34,656–34,748 bp · −
trnfM-CAU · NC_029824.1 · 35,709–35,782 bp · −
rps14 · NC_029824.1 · 35,932–36,234 bp · −
psaB · NC_029824.1 · 36,370–38,574 bp · −
psaA · NC_029824.1 · 38,600–40,852 bp · −
ycf3 · NC_029824.1 · 41,596–43,537 bp · −
rps4 · NC_029824.1 · 44,095–44,700 bp · −
trnT-UGU · NC_029824.1 · 45,086–45,158 bp · −
ndhJ · NC_029824.1 · 47,450–47,926 bp · −
ndhK · NC_029824.1 · 48,027–48,704 bp · −
ndhC · NC_029824.1 · 48,758–49,120 bp · −
trnV-UAC · NC_029824.1 · 50,058–50,710 bp · −
atpE · NC_029824.1 · 51,185–51,586 bp · −
atpB · NC_029824.1 · 51,583–53,079 bp · −
psbJ · NC_029824.1 · 62,231–62,353 bp · −
psbL · NC_029824.1 · 62,491–62,607 bp · −
psbF · NC_029824.1 · 62,631–62,750 bp · −
psbE · NC_029824.1 · 62,765–63,016 bp · −
trnW-CCA · NC_029824.1 · 64,410–64,483 bp · −
trnP-UGG · NC_029824.1 · 64,653–64,726 bp · −
rpl20 · NC_029824.1 · 66,480–66,866 bp · −
rps12 · NC_029824.1 · 67,606–67,719 bp · −
rps12 · NC_029824.1 · 94,934–95,727 bp · −
clpP · NC_029824.1 · 67,845–69,706 bp · −
psbN · NC_029824.1 · 72,039–72,170 bp · −
rpoA · NC_029824.1 · 75,559–76,572 bp · −
rps11 · NC_029824.1 · 76,644–77,060 bp · −
rpl36 · NC_029824.1 · 77,163–77,276 bp · −
infA · NC_029824.1 · 77,372–77,605 bp · −
rps8 · NC_029824.1 · 77,729–78,142 bp · −
rpl14 · NC_029824.1 · 78,310–78,678 bp · −
rpl16 · NC_029824.1 · 78,805–80,097 bp · −
rps3 · NC_029824.1 · 80,251–80,913 bp · −
rpl22 · NC_029824.1 · 80,898–81,362 bp · −
rps19 · NC_029824.1 · 81,426–81,704 bp · −
rpl2 · NC_029824.1 · 81,756–83,247 bp · −
rpl23 · NC_029824.1 · 83,266–83,547 bp · −
trnI-CAU · NC_029824.1 · 83,721–83,794 bp · −
trnL-CAA · NC_029824.1 · 91,301–91,381 bp · −
ndhB · NC_029824.1 · 91,927–94,138 bp · −
rps7 · NC_029824.1 · 94,413–94,880 bp · −
trnN-GUU · NC_029824.1 · 105,704–105,775 bp · −
ndhF · NC_029824.1 · 107,165–109,393 bp · −
ndhD · NC_029824.1 · 112,116–113,636 bp · −
psaC · NC_029824.1 · 113,740–113,985 bp · −
ndhE · NC_029824.1 · 114,237–114,542 bp · −
ndhG · NC_029824.1 · 114,752–115,282 bp · −
ndhI · NC_029824.1 · 115,658–116,164 bp · −
ndhA · NC_029824.1 · 116,244–118,355 bp · −
ndhH · NC_029824.1 · 118,357–119,538 bp · −
rps15 · NC_029824.1 · 119,639–119,911 bp · −
ycf1 · NC_029824.1 · 120,301–125,844 bp · −
trnR-ACG · NC_029824.1 · 126,791–126,864 bp · −
A4329_pgr004 · NC_029824.1 · 127,059–127,179 bp · −
A4329_pgr003 · NC_029824.1 · 127,435–127,537 bp · −
A4329_pgr002 · NC_029824.1 · 127,636–130,446 bp · −
trnA-UGC · NC_029824.1 · 130,587–131,455 bp · −
trnI-GAU · NC_029824.1 · 131,520–132,528 bp · −
A4329_pgr001 · NC_029824.1 · 132,822–134,312 bp · −
trnV-GAC · NC_029824.1 · 134,540–134,611 bp · −
ycf15 · NC_029824.1 · 140,789–141,037 bp · −
ycf2 · NC_029824.1 · 141,080–147,946 bp · −
psbK · NC_029824.1 · 7,283–7,468 bp · +
psbI · NC_029824.1 · 7,844–7,954 bp · +
trnG-UCC · NC_029824.1 · 8,842–9,601 bp · +
trnR-UCU · NC_029824.1 · 9,762–9,833 bp · +
trnC-GCA · NC_029824.1 · 27,755–27,825 bp · +
petN · NC_029824.1 · 28,660–28,749 bp · +
trnT-GGU · NC_029824.1 · 30,850–30,921 bp · +
psbD · NC_029824.1 · 31,997–33,058 bp · +
psbC · NC_029824.1 · 33,006–34,427 bp · +
psbZ · NC_029824.1 · 35,076–35,264 bp · +
trnG-GCC · NC_029824.1 · 35,490–35,560 bp · +
trnS-GGA · NC_029824.1 · 43,853–43,939 bp · +
trnL-UAA · NC_029824.1 · 45,843–46,416 bp · +
trnF-GAA · NC_029824.1 · 46,712–46,784 bp · +
trnM-CAU · NC_029824.1 · 50,899–50,971 bp · +
rbcL · NC_029824.1 · 53,881–55,326 bp · +
accD · NC_029824.1 · 56,027–57,493 bp · +
psaI · NC_029824.1 · 57,891–58,001 bp · +
ycf4 · NC_029824.1 · 58,436–58,990 bp · +
cemA · NC_029824.1 · 59,297–59,986 bp · +
petA · NC_029824.1 · 60,225–61,187 bp · +
petL · NC_029824.1 · 63,901–63,996 bp · +
petG · NC_029824.1 · 64,171–64,284 bp · +
psaJ · NC_029824.1 · 64,999–65,133 bp · +
rpl33 · NC_029824.1 · 65,612–65,812 bp · +
rps18 · NC_029824.1 · 65,958–66,263 bp · +
rps12 · NC_029824.1 · 136,102–136,895 bp · +
psbB · NC_029824.1 · 70,144–71,670 bp · +
psbT · NC_029824.1 · 71,855–71,965 bp · +
psbH · NC_029824.1 · 72,274–72,495 bp · +
petB · NC_029824.1 · 72,620–73,992 bp · +
petD · NC_029824.1 · 74,187–75,396 bp · +
ycf2 · NC_029824.1 · 83,883–90,749 bp · +
ycf15 · NC_029824.1 · 90,792–91,040 bp · +
trnV-GAC · NC_029824.1 · 97,215–97,286 bp · +
A4329_pgr008 · NC_029824.1 · 97,514–99,006 bp · +
trnI-GAU · NC_029824.1 · 99,298–100,306 bp · +
trnA-UGC · NC_029824.1 · 100,371–101,249 bp · +
A4329_pgr007 · NC_029824.1 · 101,441–104,251 bp · +
A4329_pgr006 · NC_029824.1 · 104,350–104,452 bp · +
A4329_pgr005 · NC_029824.1 · 104,708–104,828 bp · +
trnR-ACG · NC_029824.1 · 105,063–105,136 bp · +
ycf1 · NC_029824.1 · 106,101–107,159 bp · +
rpl32 · NC_029824.1 · 109,887–110,063 bp · +
trnL-UAG · NC_029824.1 · 110,796–110,875 bp · +
ccsA · NC_029824.1 · 110,963–111,934 bp · +
trnN-GUU · NC_029824.1 · 126,170–126,241 bp · +
rps7 · NC_029824.1 · 136,949–137,416 bp · +
ndhB · NC_029824.1 · 137,691–139,902 bp · +
trnL-CAA · NC_029824.1 · 140,448–140,528 bp · +
trnI-CAU · NC_029824.1 · 148,035–148,108 bp · +
rpl23 · NC_029824.1 · 148,282–148,563 bp · +
rpl2 · NC_029824.1 · 148,582–150,073 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Stachys sylvatica
ANNOTATED PLASTOME
NC_029824.1
150,167 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
0 37542 75084 112625 150167 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC A4329_pgr008 trnI-GAU trnA-UGC A4329_pgr007 A4329_pgr006 A4329_pgr005 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG A4329_pgr004 A4329_pgr003 A4329_pgr002 trnA-UGC trnI-GAU A4329_pgr001 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 75 75 Locate
psbA gene − 396 1454 1059 Locate
trnK-UUU gene − 1689 4259 2571 Locate
matK gene − 1988 3517 1530 Locate
rps16 gene − 4909 6049 1141 Locate
trnQ-UUG gene − 6875 6946 72 Locate
psbK gene + 7283 7468 186 Locate
psbI gene + 7844 7954 111 Locate
trnS-GCU gene − 8076 8163 88 Locate
trnG-UCC gene + 8842 9601 760 Locate
trnR-UCU gene + 9762 9833 72 Locate
atpA gene − 9930 11453 1524 Locate
atpF gene − 11541 12753 1213 Locate
atpH gene − 13119 13364 246 Locate
atpI gene − 14320 15063 744 Locate
rps2 gene − 15294 16004 711 Locate
rpoC2 gene − 16342 20424 4083 Locate
rpoC1 gene − 20579 23415 2837 Locate
rpoB gene − 23442 26654 3213 Locate
trnC-GCA gene + 27755 27825 71 Locate
petN gene + 28660 28749 90 Locate
psbM gene − 29252 29356 105 Locate
trnD-GUC gene − 29875 29948 74 Locate
trnY-GUA gene − 30064 30147 84 Locate
trnE-UUC gene − 30207 30279 73 Locate
trnT-GGU gene + 30850 30921 72 Locate
psbD gene + 31997 33058 1062 Locate
psbC gene + 33006 34427 1422 Locate
trnS-UGA gene − 34656 34748 93 Locate
psbZ gene + 35076 35264 189 Locate
trnG-GCC gene + 35490 35560 71 Locate
trnfM-CAU gene − 35709 35782 74 Locate
rps14 gene − 35932 36234 303 Locate
psaB gene − 36370 38574 2205 Locate
psaA gene − 38600 40852 2253 Locate
ycf3 gene − 41596 43537 1942 Locate
trnS-GGA gene + 43853 43939 87 Locate
rps4 gene − 44095 44700 606 Locate
trnT-UGU gene − 45086 45158 73 Locate
trnL-UAA gene + 45843 46416 574 Locate
trnF-GAA gene + 46712 46784 73 Locate
ndhJ gene − 47450 47926 477 Locate
ndhK gene − 48027 48704 678 Locate
ndhC gene − 48758 49120 363 Locate
trnV-UAC gene − 50058 50710 653 Locate
trnM-CAU gene + 50899 50971 73 Locate
atpE gene − 51185 51586 402 Locate
atpB gene − 51583 53079 1497 Locate
rbcL gene + 53881 55326 1446 Locate
accD gene + 56027 57493 1467 Locate
psaI gene + 57891 58001 111 Locate
ycf4 gene + 58436 58990 555 Locate
cemA gene + 59297 59986 690 Locate
petA gene + 60225 61187 963 Locate
psbJ gene − 62231 62353 123 Locate
psbL gene − 62491 62607 117 Locate
psbF gene − 62631 62750 120 Locate
psbE gene − 62765 63016 252 Locate
petL gene + 63901 63996 96 Locate
petG gene + 64171 64284 114 Locate
trnW-CCA gene − 64410 64483 74 Locate
trnP-UGG gene − 64653 64726 74 Locate
psaJ gene + 64999 65133 135 Locate
rpl33 gene + 65612 65812 201 Locate
rps18 gene + 65958 66263 306 Locate
rpl20 gene − 66480 66866 387 Locate
rps12 gene − 67606 67719 114 Locate
clpP gene − 67845 69706 1862 Locate
psbB gene + 70144 71670 1527 Locate
psbT gene + 71855 71965 111 Locate
psbN gene − 72039 72170 132 Locate
psbH gene + 72274 72495 222 Locate
petB gene + 72620 73992 1373 Locate
petD gene + 74187 75396 1210 Locate
rpoA gene − 75559 76572 1014 Locate
rps11 gene − 76644 77060 417 Locate
rpl36 gene − 77163 77276 114 Locate
infA gene − 77372 77605 234 Locate
rps8 gene − 77729 78142 414 Locate
rpl14 gene − 78310 78678 369 Locate
rpl16 gene − 78805 80097 1293 Locate
rps3 gene − 80251 80913 663 Locate
rpl22 gene − 80898 81362 465 Locate
rps19 gene − 81426 81704 279 Locate
rpl2 gene − 81756 83247 1492 Locate
rpl23 gene − 83266 83547 282 Locate
trnI-CAU gene − 83721 83794 74 Locate
ycf2 gene + 83883 90749 6867 Locate
ycf15 gene + 90792 91040 249 Locate
trnL-CAA gene − 91301 91381 81 Locate
ndhB gene − 91927 94138 2212 Locate
rps7 gene − 94413 94880 468 Locate
rps12 gene − 94934 95727 794 Locate
trnV-GAC gene + 97215 97286 72 Locate
A4329_pgr008 gene + 97514 99006 1493 Locate
trnI-GAU gene + 99298 100306 1009 Locate
trnA-UGC gene + 100371 101249 879 Locate
A4329_pgr007 gene + 101441 104251 2811 Locate
A4329_pgr006 gene + 104350 104452 103 Locate
A4329_pgr005 gene + 104708 104828 121 Locate
trnR-ACG gene + 105063 105136 74 Locate
trnN-GUU gene − 105704 105775 72 Locate
ycf1 gene + 106101 107159 1059 Locate
ndhF gene − 107165 109393 2229 Locate
rpl32 gene + 109887 110063 177 Locate
trnL-UAG gene + 110796 110875 80 Locate
ccsA gene + 110963 111934 972 Locate
ndhD gene − 112116 113636 1521 Locate
psaC gene − 113740 113985 246 Locate
ndhE gene − 114237 114542 306 Locate
ndhG gene − 114752 115282 531 Locate
ndhI gene − 115658 116164 507 Locate
ndhA gene − 116244 118355 2112 Locate
ndhH gene − 118357 119538 1182 Locate
rps15 gene − 119639 119911 273 Locate
ycf1 gene − 120301 125844 5544 Locate
trnN-GUU gene + 126170 126241 72 Locate
trnR-ACG gene − 126791 126864 74 Locate
A4329_pgr004 gene − 127059 127179 121 Locate
A4329_pgr003 gene − 127435 127537 103 Locate
A4329_pgr002 gene − 127636 130446 2811 Locate
trnA-UGC gene − 130587 131455 869 Locate
trnI-GAU gene − 131520 132528 1009 Locate
A4329_pgr001 gene − 132822 134312 1491 Locate
trnV-GAC gene − 134540 134611 72 Locate
rps12 gene + 136102 136895 794 Locate
rps7 gene + 136949 137416 468 Locate
ndhB gene + 137691 139902 2212 Locate
trnL-CAA gene + 140448 140528 81 Locate
ycf15 gene − 140789 141037 249 Locate
ycf2 gene − 141080 147946 6867 Locate
trnI-CAU gene + 148035 148108 74 Locate
rpl23 gene + 148282 148563 282 Locate
rpl2 gene + 148582 150073 1492 Locate
Status Available
Accession NC_029824.1
Length 150,167 bp
GC content 38.5%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 23 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources