Stenogyne bifida chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_029818.1 · 1–75 bp · −
psbA · NC_029818.1 · 396–1,454 bp · −
trnK-UUU · NC_029818.1 · 1,699–4,278 bp · −
matK · NC_029818.1 · 1,998–3,527 bp · −
rps16 · NC_029818.1 · 4,922–6,062 bp · −
trnQ-UUG · NC_029818.1 · 6,891–6,962 bp · −
trnS-GCU · NC_029818.1 · 8,091–8,178 bp · −
atpA · NC_029818.1 · 9,961–11,484 bp · −
atpF · NC_029818.1 · 11,572–12,781 bp · −
atpH · NC_029818.1 · 13,148–13,393 bp · −
atpI · NC_029818.1 · 14,369–15,112 bp · −
rps2 · NC_029818.1 · 15,343–16,053 bp · −
rpoC2 · NC_029818.1 · 16,391–20,473 bp · −
rpoC1 · NC_029818.1 · 20,628–23,464 bp · −
rpoB · NC_029818.1 · 23,491–26,703 bp · −
psbM · NC_029818.1 · 29,306–29,410 bp · −
trnD-GUC · NC_029818.1 · 29,929–30,002 bp · −
trnY-GUA · NC_029818.1 · 30,118–30,201 bp · −
trnE-UUC · NC_029818.1 · 30,261–30,333 bp · −
trnS-UGA · NC_029818.1 · 34,714–34,806 bp · −
trnfM-CAU · NC_029818.1 · 35,768–35,841 bp · −
rps14 · NC_029818.1 · 35,991–36,293 bp · −
psaB · NC_029818.1 · 36,429–38,633 bp · −
psaA · NC_029818.1 · 38,659–40,911 bp · −
ycf3 · NC_029818.1 · 41,642–43,584 bp · −
rps4 · NC_029818.1 · 44,150–44,755 bp · −
trnT-UGU · NC_029818.1 · 45,141–45,213 bp · −
ndhJ · NC_029818.1 · 47,500–47,976 bp · −
ndhK · NC_029818.1 · 48,077–48,754 bp · −
ndhC · NC_029818.1 · 48,808–49,170 bp · −
trnV-UAC · NC_029818.1 · 50,115–50,767 bp · −
atpE · NC_029818.1 · 51,242–51,643 bp · −
atpB · NC_029818.1 · 51,640–53,136 bp · −
psbJ · NC_029818.1 · 62,282–62,404 bp · −
psbL · NC_029818.1 · 62,542–62,658 bp · −
psbF · NC_029818.1 · 62,682–62,801 bp · −
psbE · NC_029818.1 · 62,816–63,067 bp · −
trnW-CCA · NC_029818.1 · 64,492–64,565 bp · −
trnP-UGG · NC_029818.1 · 64,730–64,803 bp · −
rpl20 · NC_029818.1 · 66,557–66,943 bp · −
rps12 · NC_029818.1 · 67,683–67,796 bp · −
rps12 · NC_029818.1 · 94,990–95,783 bp · −
clpP · NC_029818.1 · 67,922–69,784 bp · −
psbN · NC_029818.1 · 72,117–72,248 bp · −
rpoA · NC_029818.1 · 75,638–76,651 bp · −
rps11 · NC_029818.1 · 76,730–77,146 bp · −
rpl36 · NC_029818.1 · 77,249–77,362 bp · −
infA · NC_029818.1 · 77,458–77,691 bp · −
rps8 · NC_029818.1 · 77,815–78,228 bp · −
rpl14 · NC_029818.1 · 78,402–78,770 bp · −
rpl16 · NC_029818.1 · 78,897–80,198 bp · −
rps3 · NC_029818.1 · 80,340–81,002 bp · −
rpl22 · NC_029818.1 · 80,987–81,451 bp · −
rps19 · NC_029818.1 · 81,515–81,793 bp · −
rpl2 · NC_029818.1 · 81,845–83,326 bp · −
rpl23 · NC_029818.1 · 83,345–83,626 bp · −
trnI-CAU · NC_029818.1 · 83,800–83,873 bp · −
trnL-CAA · NC_029818.1 · 91,362–91,442 bp · −
ndhB · NC_029818.1 · 91,988–94,199 bp · −
rps7 · NC_029818.1 · 94,469–94,936 bp · −
trnN-GUU · NC_029818.1 · 105,703–105,774 bp · −
ndhF · NC_029818.1 · 107,164–109,392 bp · −
ndhD · NC_029818.1 · 112,053–113,573 bp · −
psaC · NC_029818.1 · 113,677–113,922 bp · −
ndhE · NC_029818.1 · 114,174–114,479 bp · −
ndhG · NC_029818.1 · 114,689–115,219 bp · −
ndhI · NC_029818.1 · 115,595–116,101 bp · −
ndhA · NC_029818.1 · 116,181–118,291 bp · −
ndhH · NC_029818.1 · 118,293–119,474 bp · −
rps15 · NC_029818.1 · 119,575–119,847 bp · −
ycf1 · NC_029818.1 · 120,237–125,780 bp · −
trnR-ACG · NC_029818.1 · 126,745–126,818 bp · −
A4322_pgr004 · NC_029818.1 · 127,053–127,173 bp · −
A4322_pgr003 · NC_029818.1 · 127,398–127,500 bp · −
A4322_pgr002 · NC_029818.1 · 127,599–130,409 bp · −
trnA-UGC · NC_029818.1 · 130,609–131,487 bp · −
trnI-GAU · NC_029818.1 · 131,552–132,560 bp · −
A4322_pgr001 · NC_029818.1 · 132,854–134,344 bp · −
trnV-GAC · NC_029818.1 · 134,572–134,643 bp · −
ycf15 · NC_029818.1 · 140,779–141,027 bp · −
ycf2 · NC_029818.1 · 141,070–147,918 bp · −
psbK · NC_029818.1 · 7,299–7,484 bp · +
psbI · NC_029818.1 · 7,859–7,969 bp · +
trnG-UCC · NC_029818.1 · 8,873–9,632 bp · +
trnR-UCU · NC_029818.1 · 9,793–9,864 bp · +
trnC-GCA · NC_029818.1 · 27,808–27,878 bp · +
petN · NC_029818.1 · 28,714–28,803 bp · +
trnT-GGU · NC_029818.1 · 30,904–30,975 bp · +
psbD · NC_029818.1 · 32,051–33,112 bp · +
psbC · NC_029818.1 · 33,060–34,481 bp · +
psbZ · NC_029818.1 · 35,135–35,323 bp · +
trnG-GCC · NC_029818.1 · 35,548–35,618 bp · +
trnS-GGA · NC_029818.1 · 43,901–43,987 bp · +
trnL-UAA · NC_029818.1 · 45,904–46,477 bp · +
trnF-GAA · NC_029818.1 · 46,773–46,845 bp · +
trnM-CAU · NC_029818.1 · 50,956–51,028 bp · +
rbcL · NC_029818.1 · 53,939–55,384 bp · +
accD · NC_029818.1 · 56,093–57,559 bp · +
psaI · NC_029818.1 · 57,957–58,067 bp · +
ycf4 · NC_029818.1 · 58,502–59,056 bp · +
cemA · NC_029818.1 · 59,363–60,052 bp · +
petA · NC_029818.1 · 60,270–61,232 bp · +
petL · NC_029818.1 · 63,983–64,078 bp · +
petG · NC_029818.1 · 64,253–64,366 bp · +
psaJ · NC_029818.1 · 65,074–65,208 bp · +
rpl33 · NC_029818.1 · 65,687–65,887 bp · +
rps18 · NC_029818.1 · 66,035–66,340 bp · +
rps12 · NC_029818.1 · 136,097–136,890 bp · +
psbB · NC_029818.1 · 70,222–71,748 bp · +
psbT · NC_029818.1 · 71,933–72,043 bp · +
psbH · NC_029818.1 · 72,352–72,573 bp · +
petB · NC_029818.1 · 72,698–74,071 bp · +
petD · NC_029818.1 · 74,266–75,475 bp · +
ycf2 · NC_029818.1 · 83,962–90,810 bp · +
ycf15 · NC_029818.1 · 90,853–91,101 bp · +
trnV-GAC · NC_029818.1 · 97,237–97,308 bp · +
A4322_pgr008 · NC_029818.1 · 97,536–99,028 bp · +
trnI-GAU · NC_029818.1 · 99,320–100,328 bp · +
trnA-UGC · NC_029818.1 · 100,393–101,271 bp · +
A4322_pgr007 · NC_029818.1 · 101,471–104,281 bp · +
A4322_pgr006 · NC_029818.1 · 104,380–104,482 bp · +
A4322_pgr005 · NC_029818.1 · 104,707–104,827 bp · +
trnR-ACG · NC_029818.1 · 105,062–105,135 bp · +
ycf1 · NC_029818.1 · 106,100–107,158 bp · +
rpl32 · NC_029818.1 · 109,828–110,004 bp · +
trnL-UAG · NC_029818.1 · 110,741–110,820 bp · +
ccsA · NC_029818.1 · 110,901–111,872 bp · +
trnN-GUU · NC_029818.1 · 126,106–126,177 bp · +
rps7 · NC_029818.1 · 136,944–137,411 bp · +
ndhB · NC_029818.1 · 137,681–139,892 bp · +
trnL-CAA · NC_029818.1 · 140,438–140,518 bp · +
trnI-CAU · NC_029818.1 · 148,007–148,080 bp · +
rpl23 · NC_029818.1 · 148,254–148,535 bp · +
rpl2 · NC_029818.1 · 148,554–150,035 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Stenogyne bifida
ANNOTATED PLASTOME
NC_029818.1
150,129 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
0 37532 75064 112597 150129 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC A4322_pgr008 trnI-GAU trnA-UGC A4322_pgr007 A4322_pgr006 A4322_pgr005 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG A4322_pgr004 A4322_pgr003 A4322_pgr002 trnA-UGC trnI-GAU A4322_pgr001 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 75 75 Locate
psbA gene − 396 1454 1059 Locate
trnK-UUU gene − 1699 4278 2580 Locate
matK gene − 1998 3527 1530 Locate
rps16 gene − 4922 6062 1141 Locate
trnQ-UUG gene − 6891 6962 72 Locate
psbK gene + 7299 7484 186 Locate
psbI gene + 7859 7969 111 Locate
trnS-GCU gene − 8091 8178 88 Locate
trnG-UCC gene + 8873 9632 760 Locate
trnR-UCU gene + 9793 9864 72 Locate
atpA gene − 9961 11484 1524 Locate
atpF gene − 11572 12781 1210 Locate
atpH gene − 13148 13393 246 Locate
atpI gene − 14369 15112 744 Locate
rps2 gene − 15343 16053 711 Locate
rpoC2 gene − 16391 20473 4083 Locate
rpoC1 gene − 20628 23464 2837 Locate
rpoB gene − 23491 26703 3213 Locate
trnC-GCA gene + 27808 27878 71 Locate
petN gene + 28714 28803 90 Locate
psbM gene − 29306 29410 105 Locate
trnD-GUC gene − 29929 30002 74 Locate
trnY-GUA gene − 30118 30201 84 Locate
trnE-UUC gene − 30261 30333 73 Locate
trnT-GGU gene + 30904 30975 72 Locate
psbD gene + 32051 33112 1062 Locate
psbC gene + 33060 34481 1422 Locate
trnS-UGA gene − 34714 34806 93 Locate
psbZ gene + 35135 35323 189 Locate
trnG-GCC gene + 35548 35618 71 Locate
trnfM-CAU gene − 35768 35841 74 Locate
rps14 gene − 35991 36293 303 Locate
psaB gene − 36429 38633 2205 Locate
psaA gene − 38659 40911 2253 Locate
ycf3 gene − 41642 43584 1943 Locate
trnS-GGA gene + 43901 43987 87 Locate
rps4 gene − 44150 44755 606 Locate
trnT-UGU gene − 45141 45213 73 Locate
trnL-UAA gene + 45904 46477 574 Locate
trnF-GAA gene + 46773 46845 73 Locate
ndhJ gene − 47500 47976 477 Locate
ndhK gene − 48077 48754 678 Locate
ndhC gene − 48808 49170 363 Locate
trnV-UAC gene − 50115 50767 653 Locate
trnM-CAU gene + 50956 51028 73 Locate
atpE gene − 51242 51643 402 Locate
atpB gene − 51640 53136 1497 Locate
rbcL gene + 53939 55384 1446 Locate
accD gene + 56093 57559 1467 Locate
psaI gene + 57957 58067 111 Locate
ycf4 gene + 58502 59056 555 Locate
cemA gene + 59363 60052 690 Locate
petA gene + 60270 61232 963 Locate
psbJ gene − 62282 62404 123 Locate
psbL gene − 62542 62658 117 Locate
psbF gene − 62682 62801 120 Locate
psbE gene − 62816 63067 252 Locate
petL gene + 63983 64078 96 Locate
petG gene + 64253 64366 114 Locate
trnW-CCA gene − 64492 64565 74 Locate
trnP-UGG gene − 64730 64803 74 Locate
psaJ gene + 65074 65208 135 Locate
rpl33 gene + 65687 65887 201 Locate
rps18 gene + 66035 66340 306 Locate
rpl20 gene − 66557 66943 387 Locate
rps12 gene − 67683 67796 114 Locate
clpP gene − 67922 69784 1863 Locate
psbB gene + 70222 71748 1527 Locate
psbT gene + 71933 72043 111 Locate
psbN gene − 72117 72248 132 Locate
psbH gene + 72352 72573 222 Locate
petB gene + 72698 74071 1374 Locate
petD gene + 74266 75475 1210 Locate
rpoA gene − 75638 76651 1014 Locate
rps11 gene − 76730 77146 417 Locate
rpl36 gene − 77249 77362 114 Locate
infA gene − 77458 77691 234 Locate
rps8 gene − 77815 78228 414 Locate
rpl14 gene − 78402 78770 369 Locate
rpl16 gene − 78897 80198 1302 Locate
rps3 gene − 80340 81002 663 Locate
rpl22 gene − 80987 81451 465 Locate
rps19 gene − 81515 81793 279 Locate
rpl2 gene − 81845 83326 1482 Locate
rpl23 gene − 83345 83626 282 Locate
trnI-CAU gene − 83800 83873 74 Locate
ycf2 gene + 83962 90810 6849 Locate
ycf15 gene + 90853 91101 249 Locate
trnL-CAA gene − 91362 91442 81 Locate
ndhB gene − 91988 94199 2212 Locate
rps7 gene − 94469 94936 468 Locate
rps12 gene − 94990 95783 794 Locate
trnV-GAC gene + 97237 97308 72 Locate
A4322_pgr008 gene + 97536 99028 1493 Locate
trnI-GAU gene + 99320 100328 1009 Locate
trnA-UGC gene + 100393 101271 879 Locate
A4322_pgr007 gene + 101471 104281 2811 Locate
A4322_pgr006 gene + 104380 104482 103 Locate
A4322_pgr005 gene + 104707 104827 121 Locate
trnR-ACG gene + 105062 105135 74 Locate
trnN-GUU gene − 105703 105774 72 Locate
ycf1 gene + 106100 107158 1059 Locate
ndhF gene − 107164 109392 2229 Locate
rpl32 gene + 109828 110004 177 Locate
trnL-UAG gene + 110741 110820 80 Locate
ccsA gene + 110901 111872 972 Locate
ndhD gene − 112053 113573 1521 Locate
psaC gene − 113677 113922 246 Locate
ndhE gene − 114174 114479 306 Locate
ndhG gene − 114689 115219 531 Locate
ndhI gene − 115595 116101 507 Locate
ndhA gene − 116181 118291 2111 Locate
ndhH gene − 118293 119474 1182 Locate
rps15 gene − 119575 119847 273 Locate
ycf1 gene − 120237 125780 5544 Locate
trnN-GUU gene + 126106 126177 72 Locate
trnR-ACG gene − 126745 126818 74 Locate
A4322_pgr004 gene − 127053 127173 121 Locate
A4322_pgr003 gene − 127398 127500 103 Locate
A4322_pgr002 gene − 127599 130409 2811 Locate
trnA-UGC gene − 130609 131487 879 Locate
trnI-GAU gene − 131552 132560 1009 Locate
A4322_pgr001 gene − 132854 134344 1491 Locate
trnV-GAC gene − 134572 134643 72 Locate
rps12 gene + 136097 136890 794 Locate
rps7 gene + 136944 137411 468 Locate
ndhB gene + 137681 139892 2212 Locate
trnL-CAA gene + 140438 140518 81 Locate
ycf15 gene − 140779 141027 249 Locate
ycf2 gene − 141070 147918 6849 Locate
trnI-CAU gene + 148007 148080 74 Locate
rpl23 gene + 148254 148535 282 Locate
rpl2 gene + 148554 150035 1482 Locate
Status Available
Accession NC_029818.1
Length 150,129 bp
GC content 38.5%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 23 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources