Tectona grandis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
IR
IR
tRNA-H (GUG) · NC_020098.1 · 4–78 bp · −
psbA · NC_020098.1 · 447–1,505 bp · −
trnK (UUU) · NC_020098.1 · 1,747–4,331 bp · −
matK · NC_020098.1 · 2,051–3,595 bp · −
rps16 · NC_020098.1 · 5,245–6,363 bp · −
trnQ (UUG) · NC_020098.1 · 7,536–7,607 bp · −
trnS (GCU) · NC_020098.1 · 8,735–8,822 bp · −
atpA · NC_020098.1 · 10,658–12,181 bp · −
atpF · NC_020098.1 · 12,255–13,510 bp · −
atpH · NC_020098.1 · 13,872–14,117 bp · −
atpI · NC_020098.1 · 15,148–15,891 bp · −
rps2 · NC_020098.1 · 16,116–16,826 bp · −
rpoC · NC_020098.1 · 17,035–21,222 bp · −
rpoC1 · NC_020098.1 · 21,377–24,252 bp · −
rpoB · NC_020098.1 · 24,279–27,491 bp · −
psbM · NC_020098.1 · 30,677–30,781 bp · −
trnD (GUC) · NC_020098.1 · 31,299–31,372 bp · −
trnY (GUA) · NC_020098.1 · 31,495–31,578 bp · −
trnE (UUC) · NC_020098.1 · 31,629–31,701 bp · −
trnS (UGA) · NC_020098.1 · 36,405–36,497 bp · −
tRNA-fM (CAU) · NC_020098.1 · 37,553–37,626 bp · −
rps14 · NC_020098.1 · 37,776–38,078 bp · −
psaB · NC_020098.1 · 38,200–40,404 bp · −
psaA · NC_020098.1 · 40,430–42,682 bp · −
ycf3 · NC_020098.1 · 43,440–45,420 bp · −
rps4 · NC_020098.1 · 46,645–47,250 bp · −
trnT (UGU) · NC_020098.1 · 47,593–47,665 bp · −
ndhJ · NC_020098.1 · 49,967–50,443 bp · −
ndhK · NC_020098.1 · 50,549–51,226 bp · −
ndhC · NC_020098.1 · 51,279–51,641 bp · −
trnV (UAC) · NC_020098.1 · 52,635–53,288 bp · −
atpE · NC_020098.1 · 53,778–54,179 bp · −
atpB · NC_020098.1 · 54,176–55,672 bp · −
psbJ · NC_020098.1 · 65,461–65,583 bp · −
psbL · NC_020098.1 · 65,717–65,833 bp · −
psbF · NC_020098.1 · 65,863–65,982 bp · −
psbE · NC_020098.1 · 65,997–66,248 bp · −
trnW (CCA) · NC_020098.1 · 67,680–67,753 bp · −
trnP (UGG) · NC_020098.1 · 67,925–67,998 bp · −
rpl20 · NC_020098.1 · 69,806–70,192 bp · −
rpl20 · NC_020098.1 · 71,029–71,142 bp · −
rps12 · NC_020098.1 · 71,029–71,142 bp · −
rps12 · NC_020098.1 · 98,953–99,195 bp · −
clpP · NC_020098.1 · 71,304–73,277 bp · −
psbN · NC_020098.1 · 75,638–75,769 bp · −
rpoA · NC_020098.1 · 79,215–80,228 bp · −
rps11 · NC_020098.1 · 80,300–80,716 bp · −
rpl36 · NC_020098.1 · 80,819–80,932 bp · −
infA · NC_020098.1 · 81,028–81,261 bp · −
rps8 · NC_020098.1 · 81,383–81,787 bp · −
rpl14 · NC_020098.1 · 81,981–82,349 bp · −
rpl16 · NC_020098.1 · 82,478–83,768 bp · −
rps3 · NC_020098.1 · 83,910–84,572 bp · −
rpl22 · NC_020098.1 · 84,557–85,021 bp · −
rps19 · NC_020098.1 · 85,080–85,358 bp · −
rpl2 · NC_020098.1 · 85,412–86,903 bp · −
rpl23 · NC_020098.1 · 86,922–87,203 bp · −
trnI (CAU) · NC_020098.1 · 87,369–87,442 bp · −
trnL (CAA) · NC_020098.1 · 94,765–94,845 bp · −
ndhB · NC_020098.1 · 95,393–97,604 bp · −
rps7 · NC_020098.1 · 97,881–98,348 bp · −
trnN · NC_020098.1 · 109,283–109,354 bp · −
ndhF · NC_020098.1 · 110,766–112,997 bp · −
ndhD · NC_020098.1 · 115,869–117,371 bp · −
psaC · NC_020098.1 · 117,490–117,735 bp · −
ndhE · NC_020098.1 · 117,991–118,296 bp · −
ndhG · NC_020098.1 · 118,533–119,063 bp · −
ndhI · NC_020098.1 · 119,410–119,910 bp · −
ndhA · NC_020098.1 · 119,991–122,050 bp · −
ndhH · NC_020098.1 · 122,052–123,233 bp · −
rps15 · NC_020098.1 · 123,329–123,601 bp · −
ycf1 · NC_020098.1 · 124,003–129,699 bp · −
trnR (ACG) · NC_020098.1 · 130,543–130,616 bp · −
rrn5 · NC_020098.1 · 130,853–130,973 bp · −
rrn4.5 · NC_020098.1 · 131,229–131,331 bp · −
rrn23 · NC_020098.1 · 131,430–134,240 bp · −
trnA (UGC) · NC_020098.1 · 134,409–135,292 bp · −
trnI (GAU) · NC_020098.1 · 135,357–136,376 bp · −
rrn16 · NC_020098.1 · 136,675–138,165 bp · −
trnV (GAC) · NC_020098.1 · 138,392–138,463 bp · −
ycf15 · NC_020098.1 · 144,539–144,787 bp · −
ycf2 · NC_020098.1 · 144,878–151,741 bp · −
psbK · NC_020098.1 · 7,926–8,120 bp · +
psbI · NC_020098.1 · 8,506–8,616 bp · +
trnG (GCC) · NC_020098.1 · 9,539–10,285 bp · +
trnR (UCU) · NC_020098.1 · 10,467–10,538 bp · +
trnC (GCA) · NC_020098.1 · 28,643–28,723 bp · +
petN · NC_020098.1 · 29,607–29,696 bp · +
trnT (GGU) · NC_020098.1 · 32,259–32,330 bp · +
psbD · NC_020098.1 · 33,734–34,795 bp · +
psbC · NC_020098.1 · 34,743–36,164 bp · +
psbZ · NC_020098.1 · 36,833–37,021 bp · +
trnG (GCC) · NC_020098.1 · 37,299–37,369 bp · +
trnS (GGA) · NC_020098.1 · 46,260–46,348 bp · +
trnL (UAA) · NC_020098.1 · 48,361–48,927 bp · +
trnF (GAA) · NC_020098.1 · 49,232–49,304 bp · +
trnM (CAU) · NC_020098.1 · 53,470–53,541 bp · +
rbcL · NC_020098.1 · 56,436–57,890 bp · +
accD · NC_020098.1 · 58,604–60,085 bp · +
psaI · NC_020098.1 · 60,801–60,911 bp · +
ycf4 · NC_020098.1 · 61,364–61,918 bp · +
cemA · NC_020098.1 · 62,577–63,266 bp · +
petA · NC_020098.1 · 63,472–64,434 bp · +
petL · NC_020098.1 · 67,168–67,263 bp · +
petG · NC_020098.1 · 67,439–67,552 bp · +
psaJ · NC_020098.1 · 68,278–68,412 bp · +
rpl33 · NC_020098.1 · 68,895–69,095 bp · +
rps18 · NC_020098.1 · 69,266–69,571 bp · +
psbB · NC_020098.1 · 73,750–75,276 bp · +
psbT · NC_020098.1 · 75,461–75,568 bp · +
psbH · NC_020098.1 · 75,875–76,096 bp · +
petB · NC_020098.1 · 76,211–77,608 bp · +
petD · NC_020098.1 · 78,503–79,027 bp · +
ycf2 · NC_020098.1 · 87,531–94,394 bp · +
ycf15 · NC_020098.1 · 94,536–94,733 bp · +
trnV (GAC) · NC_020098.1 · 100,809–100,880 bp · +
rrn16 · NC_020098.1 · 101,107–102,597 bp · +
trnI (GAU) · NC_020098.1 · 102,896–103,915 bp · +
trnA (UGC) · NC_020098.1 · 103,980–104,863 bp · +
rrn23 · NC_020098.1 · 105,032–107,842 bp · +
rrn4.5 · NC_020098.1 · 107,941–108,043 bp · +
rrn5 · NC_020098.1 · 108,299–108,419 bp · +
trnR (ACG) · NC_020098.1 · 108,656–108,729 bp · +
ycf1 · NC_020098.1 · 109,693–110,772 bp · +
rpl32 · NC_020098.1 · 113,536–113,712 bp · +
trnL (UAG) · NC_020098.1 · 114,444–114,523 bp · +
ccsA · NC_020098.1 · 114,612–115,583 bp · +
trnN (GUU) · NC_020098.1 · 129,918–129,989 bp · +
rps12 · NC_020098.1 · 140,077–140,319 bp · +
rps7 · NC_020098.1 · 140,924–141,391 bp · +
ndhB · NC_020098.1 · 141,668–143,879 bp · +
trnL (CAA) · NC_020098.1 · 144,427–144,507 bp · +
trnI (CAU) · NC_020098.1 · 151,830–151,903 bp · +
rpl23 · NC_020098.1 · 152,069–152,350 bp · +
rpl2 · NC_020098.1 · 152,369–153,860 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Tectona grandis
ANNOTATED PLASTOME
NC_020098.1
153,953 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38488 76976 115465 153953 bp
Forward strand 5′ → 3′
psbK psbI trnG (GCC) trnR (UCU) trnC (GCA) petN trnT (GGU) psbD psbC psbZ trnG (GCC) trnS (GGA) trnL (UAA) trnF (GAA) trnM (CAU) rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV (GAC) rrn16 trnI (GAU) trnA (UGC) rrn23 rrn4.5 rrn5 trnR (ACG) ycf1 rpl32 trnL (UAG) ccsA trnN (GUU) rps12 rps7 ndhB trnL (CAA) trnI (CAU) rpl23 rpl2
tRNA-H (GUG) psbA trnK (UUU) matK rps16 trnQ (UUG) trnS (GCU) atpA atpF atpH atpI rps2 rpoC rpoC1 rpoB psbM trnD (GUC) trnY (GUA) trnE (UUC) trnS (UGA) tRNA-fM (CAU) rps14 psaB psaA ycf3 rps4 trnT (UGU) ndhJ ndhK ndhC trnV (UAC) atpE atpB psbJ psbL psbF psbE trnW (CCA) trnP (UGG) rpl20 rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI (CAU) trnL (CAA) ndhB rps7 rps12 trnN ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR (ACG) rrn5 rrn4.5 rrn23 trnA (UGC) trnI (GAU) rrn16 trnV (GAC) ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
tRNA-H (GUG) gene − 4 78 75 Locate
psbA gene − 447 1505 1059 Locate
trnK (UUU) gene − 1747 4331 2585 Locate
matK gene − 2051 3595 1545 Locate
rps16 gene − 5245 6363 1119 Locate
trnQ (UUG) gene − 7536 7607 72 Locate
psbK gene + 7926 8120 195 Locate
psbI gene + 8506 8616 111 Locate
trnS (GCU) gene − 8735 8822 88 Locate
trnG (GCC) gene + 9539 10285 747 Locate
trnR (UCU) gene + 10467 10538 72 Locate
atpA gene − 10658 12181 1524 Locate
atpF gene − 12255 13510 1256 Locate
atpH gene − 13872 14117 246 Locate
atpI gene − 15148 15891 744 Locate
rps2 gene − 16116 16826 711 Locate
rpoC gene − 17035 21222 4188 Locate
rpoC1 gene − 21377 24252 2876 Locate
rpoB gene − 24279 27491 3213 Locate
trnC (GCA) gene + 28643 28723 81 Locate
petN gene + 29607 29696 90 Locate
psbM gene − 30677 30781 105 Locate
trnD (GUC) gene − 31299 31372 74 Locate
trnY (GUA) gene − 31495 31578 84 Locate
trnE (UUC) gene − 31629 31701 73 Locate
trnT (GGU) gene + 32259 32330 72 Locate
psbD gene + 33734 34795 1062 Locate
psbC gene + 34743 36164 1422 Locate
trnS (UGA) gene − 36405 36497 93 Locate
psbZ gene + 36833 37021 189 Locate
trnG (GCC) gene + 37299 37369 71 Locate
tRNA-fM (CAU) gene − 37553 37626 74 Locate
rps14 gene − 37776 38078 303 Locate
psaB gene − 38200 40404 2205 Locate
psaA gene − 40430 42682 2253 Locate
ycf3 gene − 43440 45420 1981 Locate
trnS (GGA) gene + 46260 46348 89 Locate
rps4 gene − 46645 47250 606 Locate
trnT (UGU) gene − 47593 47665 73 Locate
trnL (UAA) gene + 48361 48927 567 Locate
trnF (GAA) gene + 49232 49304 73 Locate
ndhJ gene − 49967 50443 477 Locate
ndhK gene − 50549 51226 678 Locate
ndhC gene − 51279 51641 363 Locate
trnV (UAC) gene − 52635 53288 654 Locate
trnM (CAU) gene + 53470 53541 72 Locate
atpE gene − 53778 54179 402 Locate
atpB gene − 54176 55672 1497 Locate
rbcL gene + 56436 57890 1455 Locate
accD gene + 58604 60085 1482 Locate
psaI gene + 60801 60911 111 Locate
ycf4 gene + 61364 61918 555 Locate
cemA gene + 62577 63266 690 Locate
petA gene + 63472 64434 963 Locate
psbJ gene − 65461 65583 123 Locate
psbL gene − 65717 65833 117 Locate
psbF gene − 65863 65982 120 Locate
psbE gene − 65997 66248 252 Locate
petL gene + 67168 67263 96 Locate
petG gene + 67439 67552 114 Locate
trnW (CCA) gene − 67680 67753 74 Locate
trnP (UGG) gene − 67925 67998 74 Locate
psaJ gene + 68278 68412 135 Locate
rpl33 gene + 68895 69095 201 Locate
rps18 gene + 69266 69571 306 Locate
rpl20 gene − 69806 70192 387 Locate
rpl20 gene − 71029 71142 114 Locate
rps12 gene − 71029 71142 114 Locate
clpP gene − 71304 73277 1974 Locate
psbB gene + 73750 75276 1527 Locate
psbT gene + 75461 75568 108 Locate
psbN gene − 75638 75769 132 Locate
psbH gene + 75875 76096 222 Locate
petB gene + 76211 77608 1398 Locate
petD gene + 78503 79027 525 Locate
rpoA gene − 79215 80228 1014 Locate
rps11 gene − 80300 80716 417 Locate
rpl36 gene − 80819 80932 114 Locate
infA gene − 81028 81261 234 Locate
rps8 gene − 81383 81787 405 Locate
rpl14 gene − 81981 82349 369 Locate
rpl16 gene − 82478 83768 1291 Locate
rps3 gene − 83910 84572 663 Locate
rpl22 gene − 84557 85021 465 Locate
rps19 gene − 85080 85358 279 Locate
rpl2 gene − 85412 86903 1492 Locate
rpl23 gene − 86922 87203 282 Locate
trnI (CAU) gene − 87369 87442 74 Locate
ycf2 gene + 87531 94394 6864 Locate
ycf15 gene + 94536 94733 198 Locate
trnL (CAA) gene − 94765 94845 81 Locate
ndhB gene − 95393 97604 2212 Locate
rps7 gene − 97881 98348 468 Locate
rps12 gene − 98953 99195 243 Locate
trnV (GAC) gene + 100809 100880 72 Locate
rrn16 gene + 101107 102597 1491 Locate
trnI (GAU) gene + 102896 103915 1020 Locate
trnA (UGC) gene + 103980 104863 884 Locate
rrn23 gene + 105032 107842 2811 Locate
rrn4.5 gene + 107941 108043 103 Locate
rrn5 gene + 108299 108419 121 Locate
trnR (ACG) gene + 108656 108729 74 Locate
trnN gene − 109283 109354 72 Locate
ycf1 gene + 109693 110772 1080 Locate
ndhF gene − 110766 112997 2232 Locate
rpl32 gene + 113536 113712 177 Locate
trnL (UAG) gene + 114444 114523 80 Locate
ccsA gene + 114612 115583 972 Locate
ndhD gene − 115869 117371 1503 Locate
psaC gene − 117490 117735 246 Locate
ndhE gene − 117991 118296 306 Locate
ndhG gene − 118533 119063 531 Locate
ndhI gene − 119410 119910 501 Locate
ndhA gene − 119991 122050 2060 Locate
ndhH gene − 122052 123233 1182 Locate
rps15 gene − 123329 123601 273 Locate
ycf1 gene − 124003 129699 5697 Locate
trnN (GUU) gene + 129918 129989 72 Locate
trnR (ACG) gene − 130543 130616 74 Locate
rrn5 gene − 130853 130973 121 Locate
rrn4.5 gene − 131229 131331 103 Locate
rrn23 gene − 131430 134240 2811 Locate
trnA (UGC) gene − 134409 135292 884 Locate
trnI (GAU) gene − 135357 136376 1020 Locate
rrn16 gene − 136675 138165 1491 Locate
trnV (GAC) gene − 138392 138463 72 Locate
rps12 gene + 140077 140319 243 Locate
rps7 gene + 140924 141391 468 Locate
ndhB gene + 141668 143879 2212 Locate
trnL (CAA) gene + 144427 144507 81 Locate
ycf15 gene − 144539 144787 249 Locate
ycf2 gene − 144878 151741 6864 Locate
trnI (CAU) gene + 151830 151903 74 Locate
rpl23 gene + 152069 152350 282 Locate
rpl2 gene + 152369 153860 1492 Locate
Status Available
Accession NC_020098.1
Length 153,953 bp
GC content 37.9%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 2
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources