Thymus japonicus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_046822.1 · 11–84 bp · −
psbA · NC_046822.1 · 407–1,465 bp · −
trnK-UUU · NC_046822.1 · 1,686–4,226 bp · −
matK · NC_046822.1 · 1,966–3,489 bp · −
rps16 · NC_046822.1 · 4,773–5,917 bp · −
trnQ-UUG · NC_046822.1 · 6,833–6,904 bp · −
trnS-GCU · NC_046822.1 · 8,115–8,202 bp · −
atpA · NC_046822.1 · 10,038–11,561 bp · −
atpF · NC_046822.1 · 11,657–12,904 bp · −
atpH · NC_046822.1 · 13,171–13,416 bp · −
atpI · NC_046822.1 · 14,453–15,196 bp · −
rps2 · NC_046822.1 · 15,419–16,129 bp · −
rpoC2 · NC_046822.1 · 16,339–20,532 bp · −
rpoC1 · NC_046822.1 · 20,682–23,486 bp · −
rpoB · NC_046822.1 · 23,513–26,725 bp · −
psbM · NC_046822.1 · 29,152–29,256 bp · −
trnD-GUC · NC_046822.1 · 29,774–29,847 bp · −
trnY-GUA · NC_046822.1 · 29,958–30,041 bp · −
trnE-UUC · NC_046822.1 · 30,121–30,193 bp · −
trnS-UGA · NC_046822.1 · 34,848–34,940 bp · −
trnfM-CAU · NC_046822.1 · 35,979–36,052 bp · −
rps14 · NC_046822.1 · 36,197–36,499 bp · −
psaB · NC_046822.1 · 36,623–38,827 bp · −
psaA · NC_046822.1 · 38,853–41,105 bp · −
ycf3 · NC_046822.1 · 41,871–43,798 bp · −
rps4 · NC_046822.1 · 45,015–45,620 bp · −
trnT-UGU · NC_046822.1 · 46,014–46,086 bp · −
ndhJ · NC_046822.1 · 48,313–48,789 bp · −
ndhK · NC_046822.1 · 48,900–49,577 bp · −
ndhC · NC_046822.1 · 49,629–49,991 bp · −
trnV-UAC · NC_046822.1 · 50,960–51,602 bp · −
atpE · NC_046822.1 · 52,051–52,452 bp · −
atpB · NC_046822.1 · 52,449–53,939 bp · −
psbJ · NC_046822.1 · 63,418–63,540 bp · −
psbL · NC_046822.1 · 63,675–63,791 bp · −
psbF · NC_046822.1 · 63,815–63,934 bp · −
psbE · NC_046822.1 · 63,949–64,200 bp · −
trnW-CCA · NC_046822.1 · 65,571–65,644 bp · −
trnP-UGG · NC_046822.1 · 65,818–65,891 bp · −
rpl20 · NC_046822.1 · 67,664–68,050 bp · −
rps12 · NC_046822.1 · 68,854–68,967 bp · −
rps12 · NC_046822.1 · 96,156–96,949 bp · −
clpP · NC_046822.1 · 69,092–70,998 bp · −
psbN · NC_046822.1 · 73,328–73,459 bp · −
rpoA · NC_046822.1 · 76,847–77,854 bp · −
rps11 · NC_046822.1 · 77,926–78,342 bp · −
rpl36 · NC_046822.1 · 78,452–78,565 bp · −
infA · NC_046822.1 · 78,629–78,862 bp · −
rps8 · NC_046822.1 · 78,990–79,394 bp · −
rpl14 · NC_046822.1 · 79,565–79,933 bp · −
rpl16 · NC_046822.1 · 80,065–81,339 bp · −
rps3 · NC_046822.1 · 81,484–82,146 bp · −
rpl22 · NC_046822.1 · 82,131–82,598 bp · −
rps19 · NC_046822.1 · 82,668–82,946 bp · −
rpl2 · NC_046822.1 · 83,008–84,495 bp · −
rpl23 · NC_046822.1 · 84,514–84,795 bp · −
trnI-CAU · NC_046822.1 · 84,961–85,034 bp · −
trnL-CAA · NC_046822.1 · 92,521–92,601 bp · −
ndhB · NC_046822.1 · 93,162–95,369 bp · −
rps7 · NC_046822.1 · 95,635–96,102 bp · −
trnN-GUU · NC_046822.1 · 107,042–107,113 bp · −
ndhF · NC_046822.1 · 108,467–110,698 bp · −
ndhD · NC_046822.1 · 113,479–114,981 bp · −
psaC · NC_046822.1 · 115,103–115,348 bp · −
ndhE · NC_046822.1 · 115,583–115,888 bp · −
ndhG · NC_046822.1 · 116,112–116,642 bp · −
ndhI · NC_046822.1 · 117,027–117,533 bp · −
ndhA · NC_046822.1 · 117,617–119,705 bp · −
ndhH · NC_046822.1 · 119,707–120,888 bp · −
rps15 · NC_046822.1 · 120,988–121,260 bp · −
ycf1 · NC_046822.1 · 121,700–127,243 bp · −
trnR-ACG · NC_046822.1 · 128,170–128,248 bp · −
rrn5 · NC_046822.1 · 128,487–128,607 bp · −
rrn4.5 · NC_046822.1 · 128,868–128,970 bp · −
rrn23 · NC_046822.1 · 129,069–131,879 bp · −
trnA-UGC · NC_046822.1 · 132,045–132,922 bp · −
trnI-GAU · NC_046822.1 · 132,992–134,013 bp · −
rrn16 · NC_046822.1 · 134,312–135,802 bp · −
trnV-GAC · NC_046822.1 · 136,029–136,100 bp · −
ycf15 · NC_046822.1 · 142,421–142,669 bp · −
ycf2 · NC_046822.1 · 142,760–149,563 bp · −
psbK · NC_046822.1 · 7,285–7,470 bp · +
psbI · NC_046822.1 · 7,854–7,964 bp · +
trnG-UCC · NC_046822.1 · 8,928–9,679 bp · +
trnR-UCU · NC_046822.1 · 9,860–9,931 bp · +
trnC-GCA · NC_046822.1 · 27,855–27,925 bp · +
petN · NC_046822.1 · 28,086–28,175 bp · +
trnT-GGU · NC_046822.1 · 30,758–30,829 bp · +
psbD · NC_046822.1 · 32,170–33,231 bp · +
psbC · NC_046822.1 · 33,179–34,600 bp · +
psbZ · NC_046822.1 · 35,286–35,474 bp · +
trnG-GCC · NC_046822.1 · 35,746–35,816 bp · +
trnS-GGA · NC_046822.1 · 44,641–44,727 bp · +
trnL-UAA · NC_046822.1 · 46,763–47,316 bp · +
trnF-GAA · NC_046822.1 · 47,609–47,681 bp · +
trnM-CAU · NC_046822.1 · 51,783–51,855 bp · +
rbcL · NC_046822.1 · 54,738–56,171 bp · +
accD · NC_046822.1 · 56,856–58,337 bp · +
psaI · NC_046822.1 · 58,801–58,911 bp · +
ycf4 · NC_046822.1 · 59,360–59,914 bp · +
cemA · NC_046822.1 · 60,558–61,247 bp · +
petA · NC_046822.1 · 61,461–62,423 bp · +
petL · NC_046822.1 · 65,072–65,167 bp · +
petG · NC_046822.1 · 65,337–65,450 bp · +
psaJ · NC_046822.1 · 66,171–66,311 bp · +
rpl33 · NC_046822.1 · 66,752–66,955 bp · +
rps18 · NC_046822.1 · 67,126–67,431 bp · +
rps12 · NC_046822.1 · 137,737–138,530 bp · +
psbB · NC_046822.1 · 71,456–72,982 bp · +
psbT · NC_046822.1 · 73,158–73,259 bp · +
psbH · NC_046822.1 · 73,565–73,786 bp · +
petB · NC_046822.1 · 73,912–75,296 bp · +
petD · NC_046822.1 · 75,484–76,664 bp · +
ycf2 · NC_046822.1 · 85,123–91,926 bp · +
ycf15 · NC_046822.1 · 92,017–92,265 bp · +
trnV-GAC · NC_046822.1 · 98,586–98,657 bp · +
rrn16 · NC_046822.1 · 98,884–100,374 bp · +
trnI-GAU · NC_046822.1 · 100,673–101,694 bp · +
trnA-UGC · NC_046822.1 · 101,764–102,641 bp · +
rrn23 · NC_046822.1 · 102,807–105,617 bp · +
rrn4.5 · NC_046822.1 · 105,716–105,818 bp · +
rrn5 · NC_046822.1 · 106,079–106,199 bp · +
trnR-ACG · NC_046822.1 · 106,438–106,516 bp · +
rpl32 · NC_046822.1 · 111,176–111,346 bp · +
trnL-UAG · NC_046822.1 · 112,073–112,152 bp · +
ccsA · NC_046822.1 · 112,256–113,233 bp · +
trnN-GUU · NC_046822.1 · 127,573–127,644 bp · +
rps7 · NC_046822.1 · 138,584–139,051 bp · +
ndhB · NC_046822.1 · 139,317–141,524 bp · +
trnL-CAA · NC_046822.1 · 142,085–142,165 bp · +
trnI-CAU · NC_046822.1 · 149,652–149,725 bp · +
rpl23 · NC_046822.1 · 149,891–150,172 bp · +
rpl2 · NC_046822.1 · 150,191–151,678 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Thymus japonicus
ANNOTATED PLASTOME
NC_046822.1
151,782 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37946 75891 113836 151782 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 407 1465 1059 Locate
trnK-UUU gene − 1686 4226 2541 Locate
matK gene − 1966 3489 1524 Locate
rps16 gene − 4773 5917 1145 Locate
trnQ-UUG gene − 6833 6904 72 Locate
psbK gene + 7285 7470 186 Locate
psbI gene + 7854 7964 111 Locate
trnS-GCU gene − 8115 8202 88 Locate
trnG-UCC gene + 8928 9679 752 Locate
trnR-UCU gene + 9860 9931 72 Locate
atpA gene − 10038 11561 1524 Locate
atpF gene − 11657 12904 1248 Locate
atpH gene − 13171 13416 246 Locate
atpI gene − 14453 15196 744 Locate
rps2 gene − 15419 16129 711 Locate
rpoC2 gene − 16339 20532 4194 Locate
rpoC1 gene − 20682 23486 2805 Locate
rpoB gene − 23513 26725 3213 Locate
trnC-GCA gene + 27855 27925 71 Locate
petN gene + 28086 28175 90 Locate
psbM gene − 29152 29256 105 Locate
trnD-GUC gene − 29774 29847 74 Locate
trnY-GUA gene − 29958 30041 84 Locate
trnE-UUC gene − 30121 30193 73 Locate
trnT-GGU gene + 30758 30829 72 Locate
psbD gene + 32170 33231 1062 Locate
psbC gene + 33179 34600 1422 Locate
trnS-UGA gene − 34848 34940 93 Locate
psbZ gene + 35286 35474 189 Locate
trnG-GCC gene + 35746 35816 71 Locate
trnfM-CAU gene − 35979 36052 74 Locate
rps14 gene − 36197 36499 303 Locate
psaB gene − 36623 38827 2205 Locate
psaA gene − 38853 41105 2253 Locate
ycf3 gene − 41871 43798 1928 Locate
trnS-GGA gene + 44641 44727 87 Locate
rps4 gene − 45015 45620 606 Locate
trnT-UGU gene − 46014 46086 73 Locate
trnL-UAA gene + 46763 47316 554 Locate
trnF-GAA gene + 47609 47681 73 Locate
ndhJ gene − 48313 48789 477 Locate
ndhK gene − 48900 49577 678 Locate
ndhC gene − 49629 49991 363 Locate
trnV-UAC gene − 50960 51602 643 Locate
trnM-CAU gene + 51783 51855 73 Locate
atpE gene − 52051 52452 402 Locate
atpB gene − 52449 53939 1491 Locate
rbcL gene + 54738 56171 1434 Locate
accD gene + 56856 58337 1482 Locate
psaI gene + 58801 58911 111 Locate
ycf4 gene + 59360 59914 555 Locate
cemA gene + 60558 61247 690 Locate
petA gene + 61461 62423 963 Locate
psbJ gene − 63418 63540 123 Locate
psbL gene − 63675 63791 117 Locate
psbF gene − 63815 63934 120 Locate
psbE gene − 63949 64200 252 Locate
petL gene + 65072 65167 96 Locate
petG gene + 65337 65450 114 Locate
trnW-CCA gene − 65571 65644 74 Locate
trnP-UGG gene − 65818 65891 74 Locate
psaJ gene + 66171 66311 141 Locate
rpl33 gene + 66752 66955 204 Locate
rps18 gene + 67126 67431 306 Locate
rpl20 gene − 67664 68050 387 Locate
rps12 gene − 68854 68967 114 Locate
clpP gene − 69092 70998 1907 Locate
psbB gene + 71456 72982 1527 Locate
psbT gene + 73158 73259 102 Locate
psbN gene − 73328 73459 132 Locate
psbH gene + 73565 73786 222 Locate
petB gene + 73912 75296 1385 Locate
petD gene + 75484 76664 1181 Locate
rpoA gene − 76847 77854 1008 Locate
rps11 gene − 77926 78342 417 Locate
rpl36 gene − 78452 78565 114 Locate
infA gene − 78629 78862 234 Locate
rps8 gene − 78990 79394 405 Locate
rpl14 gene − 79565 79933 369 Locate
rpl16 gene − 80065 81339 1275 Locate
rps3 gene − 81484 82146 663 Locate
rpl22 gene − 82131 82598 468 Locate
rps19 gene − 82668 82946 279 Locate
rpl2 gene − 83008 84495 1488 Locate
rpl23 gene − 84514 84795 282 Locate
trnI-CAU gene − 84961 85034 74 Locate
ycf2 gene + 85123 91926 6804 Locate
ycf15 gene + 92017 92265 249 Locate
trnL-CAA gene − 92521 92601 81 Locate
ndhB gene − 93162 95369 2208 Locate
rps7 gene − 95635 96102 468 Locate
rps12 gene − 96156 96949 794 Locate
trnV-GAC gene + 98586 98657 72 Locate
rrn16 gene + 98884 100374 1491 Locate
trnI-GAU gene + 100673 101694 1022 Locate
trnA-UGC gene + 101764 102641 878 Locate
rrn23 gene + 102807 105617 2811 Locate
rrn4.5 gene + 105716 105818 103 Locate
rrn5 gene + 106079 106199 121 Locate
trnR-ACG gene + 106438 106516 79 Locate
trnN-GUU gene − 107042 107113 72 Locate
ndhF gene − 108467 110698 2232 Locate
rpl32 gene + 111176 111346 171 Locate
trnL-UAG gene + 112073 112152 80 Locate
ccsA gene + 112256 113233 978 Locate
ndhD gene − 113479 114981 1503 Locate
psaC gene − 115103 115348 246 Locate
ndhE gene − 115583 115888 306 Locate
ndhG gene − 116112 116642 531 Locate
ndhI gene − 117027 117533 507 Locate
ndhA gene − 117617 119705 2089 Locate
ndhH gene − 119707 120888 1182 Locate
rps15 gene − 120988 121260 273 Locate
ycf1 gene − 121700 127243 5544 Locate
trnN-GUU gene + 127573 127644 72 Locate
trnR-ACG gene − 128170 128248 79 Locate
rrn5 gene − 128487 128607 121 Locate
rrn4.5 gene − 128868 128970 103 Locate
rrn23 gene − 129069 131879 2811 Locate
trnA-UGC gene − 132045 132922 878 Locate
trnI-GAU gene − 132992 134013 1022 Locate
rrn16 gene − 134312 135802 1491 Locate
trnV-GAC gene − 136029 136100 72 Locate
rps12 gene + 137737 138530 794 Locate
rps7 gene + 138584 139051 468 Locate
ndhB gene + 139317 141524 2208 Locate
trnL-CAA gene + 142085 142165 81 Locate
ycf15 gene − 142421 142669 249 Locate
ycf2 gene − 142760 149563 6804 Locate
trnI-CAU gene + 149652 149725 74 Locate
rpl23 gene + 149891 150172 282 Locate
rpl2 gene + 150191 151678 1488 Locate
Status Available
Accession NC_046822.1
Length 151,782 bp
GC content 37.9%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources