Coordinate-aware organelle record

Thymus japonicus chloroplast genome

Available NC_046822.1 151,782 bp 132 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

132 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	10	84	74
psbA	gene	photosystem-ii	−	406	1465	1059
trnK-UUU	gene	translation-rna	−	1685	4226	2541
matK	gene	other	−	1965	3489	1524
rps16	gene	ribosomal-protein	−	4772	5917	1145
trnQ-UUG	gene	translation-rna	−	6832	6904	72
psbK	gene	photosystem-ii	+	7284	7470	186
psbI	gene	photosystem-ii	+	7853	7964	111
trnS-GCU	gene	translation-rna	−	8114	8202	88
trnG-UCC	gene	translation-rna	+	8927	9679	752
trnR-UCU	gene	translation-rna	+	9859	9931	72
atpA	gene	atp-synthase	−	10037	11561	1524
atpF	gene	atp-synthase	−	11656	12904	1248
atpH	gene	atp-synthase	−	13170	13416	246
atpI	gene	atp-synthase	−	14452	15196	744
rps2	gene	ribosomal-protein	−	15418	16129	711
rpoC2	gene	rna-polymerase	−	16338	20532	4194
rpoC1	gene	rna-polymerase	−	20681	23486	2805
rpoB	gene	rna-polymerase	−	23512	26725	3213
trnC-GCA	gene	translation-rna	+	27854	27925	71
petN	gene	cytochrome	+	28085	28175	90
psbM	gene	photosystem-ii	−	29151	29256	105
trnD-GUC	gene	translation-rna	−	29773	29847	74
trnY-GUA	gene	translation-rna	−	29957	30041	84
trnE-UUC	gene	translation-rna	−	30120	30193	73
trnT-GGU	gene	translation-rna	+	30757	30829	72
psbD	gene	photosystem-ii	+	32169	33231	1062
psbC	gene	photosystem-ii	+	33178	34600	1422
trnS-UGA	gene	translation-rna	−	34847	34940	93
psbZ	gene	photosystem-ii	+	35285	35474	189
trnG-GCC	gene	translation-rna	+	35745	35816	71
trnfM-CAU	gene	translation-rna	−	35978	36052	74
rps14	gene	ribosomal-protein	−	36196	36499	303
psaB	gene	photosystem-i	−	36622	38827	2205
psaA	gene	photosystem-i	−	38852	41105	2253
ycf3	gene	other	−	41870	43798	1928
trnS-GGA	gene	translation-rna	+	44640	44727	87
rps4	gene	ribosomal-protein	−	45014	45620	606
trnT-UGU	gene	translation-rna	−	46013	46086	73
trnL-UAA	gene	translation-rna	+	46762	47316	554
trnF-GAA	gene	translation-rna	+	47608	47681	73
ndhJ	gene	nad-dehydrogenase	−	48312	48789	477
ndhK	gene	nad-dehydrogenase	−	48899	49577	678
ndhC	gene	nad-dehydrogenase	−	49628	49991	363
trnV-UAC	gene	translation-rna	−	50959	51602	643
trnM-CAU	gene	translation-rna	+	51782	51855	73
atpE	gene	atp-synthase	−	52050	52452	402
atpB	gene	atp-synthase	−	52448	53939	1491
rbcL	gene	other	+	54737	56171	1434
accD	gene	other	+	56855	58337	1482
psaI	gene	photosystem-i	+	58800	58911	111
ycf4	gene	other	+	59359	59914	555
cemA	gene	other	+	60557	61247	690
petA	gene	cytochrome	+	61460	62423	963
psbJ	gene	photosystem-ii	−	63417	63540	123
psbL	gene	photosystem-ii	−	63674	63791	117
psbF	gene	photosystem-ii	−	63814	63934	120
psbE	gene	photosystem-ii	−	63948	64200	252
petL	gene	cytochrome	+	65071	65167	96
petG	gene	cytochrome	+	65336	65450	114
trnW-CCA	gene	translation-rna	−	65570	65644	74
trnP-UGG	gene	translation-rna	−	65817	65891	74
psaJ	gene	photosystem-i	+	66170	66311	141
rpl33	gene	ribosomal-protein	+	66751	66955	204
rps18	gene	ribosomal-protein	+	67125	67431	306
rpl20	gene	ribosomal-protein	−	67663	68050	387
rps12	gene	ribosomal-protein	−	68853	96949	28096
rps12	gene	ribosomal-protein	+	68853	138530	69677
clpP	gene	other	−	69091	70998	1907
psbB	gene	photosystem-ii	+	71455	72982	1527
psbT	gene	photosystem-ii	+	73157	73259	102
psbN	gene	photosystem-ii	−	73327	73459	132
psbH	gene	photosystem-ii	+	73564	73786	222
petB	gene	cytochrome	+	73911	75296	1385
petD	gene	cytochrome	+	75483	76664	1181
rpoA	gene	rna-polymerase	−	76846	77854	1008
rps11	gene	ribosomal-protein	−	77925	78342	417
rpl36	gene	ribosomal-protein	−	78451	78565	114
infA	gene	other	−	78628	78862	234
rps8	gene	ribosomal-protein	−	78989	79394	405
rpl14	gene	ribosomal-protein	−	79564	79933	369
rpl16	gene	ribosomal-protein	−	80064	81339	1275
rps3	gene	ribosomal-protein	−	81483	82146	663
rpl22	gene	ribosomal-protein	−	82130	82598	468
rps19	gene	ribosomal-protein	−	82667	82946	279
rpl2	gene	ribosomal-protein	−	83007	84495	1488
rpl23	gene	ribosomal-protein	−	84513	84795	282
trnI-CAU	gene	translation-rna	−	84960	85034	74
ycf2	gene	other	+	85122	91926	6804
ycf15	gene	other	+	92016	92265	249
trnL-CAA	gene	translation-rna	−	92520	92601	81
ndhB	gene	nad-dehydrogenase	−	93161	95369	2208
rps7	gene	ribosomal-protein	−	95634	96102	468
trnV-GAC	gene	translation-rna	+	98585	98657	72
rrn16	gene	ribosomal-rna	+	98883	100374	1491
trnI-GAU	gene	translation-rna	+	100672	101694	1022
trnA-UGC	gene	translation-rna	+	101763	102641	878
rrn23	gene	ribosomal-rna	+	102806	105617	2811
rrn4.5	gene	ribosomal-rna	+	105715	105818	103
rrn5	gene	ribosomal-rna	+	106078	106199	121
trnR-ACG	gene	translation-rna	+	106437	106516	79
trnN-GUU	gene	translation-rna	−	107041	107113	72
ndhF	gene	nad-dehydrogenase	−	108466	110698	2232
rpl32	gene	ribosomal-protein	+	111175	111346	171
trnL-UAG	gene	translation-rna	+	112072	112152	80
ccsA	gene	other	+	112255	113233	978
ndhD	gene	nad-dehydrogenase	−	113478	114981	1503
psaC	gene	photosystem-i	−	115102	115348	246
ndhE	gene	nad-dehydrogenase	−	115582	115888	306
ndhG	gene	nad-dehydrogenase	−	116111	116642	531
ndhI	gene	nad-dehydrogenase	−	117026	117533	507
ndhA	gene	nad-dehydrogenase	−	117616	119705	2089
ndhH	gene	nad-dehydrogenase	−	119706	120888	1182
rps15	gene	ribosomal-protein	−	120987	121260	273
ycf1	gene	other	−	121699	127243	5544
trnN-GUU	gene	translation-rna	+	127572	127644	72
trnR-ACG	gene	translation-rna	−	128169	128248	79
rrn5	gene	ribosomal-rna	−	128486	128607	121
rrn4.5	gene	ribosomal-rna	−	128867	128970	103
rrn23	gene	ribosomal-rna	−	129068	131879	2811
trnA-UGC	gene	translation-rna	−	132044	132922	878
trnI-GAU	gene	translation-rna	−	132991	134013	1022
rrn16	gene	ribosomal-rna	−	134311	135802	1491
trnV-GAC	gene	translation-rna	−	136028	136100	72
rps7	gene	ribosomal-protein	+	138583	139051	468
ndhB	gene	nad-dehydrogenase	+	139316	141524	2208
trnL-CAA	gene	translation-rna	+	142084	142165	81
ycf15	gene	other	−	142420	142669	249
ycf2	gene	other	−	142759	149563	6804
trnI-CAU	gene	translation-rna	+	149651	149725	74
rpl23	gene	ribosomal-protein	+	149890	150172	282
rpl2	gene	ribosomal-protein	+	150190	151678	1488

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomeNC_046822.1DNA · accDNC_046822DNA · atpBNC_046822DNA · matKNC_046822DNA · ndhFNC_046822DNA · psbANC_046822DNA · rbcLNC_046822DNA · rps12NC_046822DNA · ycf1NC_046822