Thymus linearis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_071852.1 · 11–84 bp · −
psbA · NC_071852.1 · 409–1,467 bp · −
trnK-UUU · NC_071852.1 · 1,688–4,228 bp · −
matK · NC_071852.1 · 1,968–3,491 bp · −
rps16 · NC_071852.1 · 4,775–5,919 bp · −
trnQ-UUG · NC_071852.1 · 6,837–6,908 bp · −
trnS-GCU · NC_071852.1 · 8,116–8,203 bp · −
atpA · NC_071852.1 · 10,031–11,554 bp · −
atpF · NC_071852.1 · 11,651–12,904 bp · −
atpH · NC_071852.1 · 13,171–13,416 bp · −
atpI · NC_071852.1 · 14,453–15,196 bp · −
rps2 · NC_071852.1 · 15,419–16,129 bp · −
rpoC2 · NC_071852.1 · 16,339–20,532 bp · −
rpoC1 · NC_071852.1 · 20,682–23,486 bp · −
rpoB · NC_071852.1 · 23,513–26,725 bp · −
psbM · NC_071852.1 · 29,152–29,256 bp · −
trnD-GUC · NC_071852.1 · 29,797–29,870 bp · −
trnY-GUA · NC_071852.1 · 29,981–30,064 bp · −
trnE-UUC · NC_071852.1 · 30,144–30,216 bp · −
trnS-UGA · NC_071852.1 · 34,877–34,969 bp · −
trnfM-CAU · NC_071852.1 · 36,011–36,084 bp · −
rps14 · NC_071852.1 · 36,229–36,531 bp · −
psaB · NC_071852.1 · 36,655–38,859 bp · −
psaA · NC_071852.1 · 38,885–41,137 bp · −
ycf3 · NC_071852.1 · 41,903–43,831 bp · −
rps4 · NC_071852.1 · 45,048–45,653 bp · −
trnT-UGU · NC_071852.1 · 46,047–46,119 bp · −
ndhJ · NC_071852.1 · 48,352–48,828 bp · −
ndhK · NC_071852.1 · 48,939–49,616 bp · −
ndhC · NC_071852.1 · 49,668–50,030 bp · −
trnV-UAC · NC_071852.1 · 50,999–51,641 bp · −
atpE · NC_071852.1 · 52,090–52,491 bp · −
atpB · NC_071852.1 · 52,488–53,978 bp · −
psbJ · NC_071852.1 · 63,464–63,586 bp · −
psbL · NC_071852.1 · 63,721–63,837 bp · −
psbF · NC_071852.1 · 63,861–63,980 bp · −
psbE · NC_071852.1 · 63,995–64,246 bp · −
trnW-CCA · NC_071852.1 · 65,617–65,690 bp · −
trnP-UGG · NC_071852.1 · 65,864–65,937 bp · −
rpl20 · NC_071852.1 · 67,712–68,098 bp · −
rps12 · NC_071852.1 · 68,902–69,015 bp · −
rps12 · NC_071852.1 · 96,194–96,987 bp · −
clpP · NC_071852.1 · 69,140–71,046 bp · −
psbN · NC_071852.1 · 73,370–73,501 bp · −
rpoA · NC_071852.1 · 76,889–77,896 bp · −
rps11 · NC_071852.1 · 77,968–78,384 bp · −
rpl36 · NC_071852.1 · 78,494–78,607 bp · −
infA · NC_071852.1 · 78,671–78,904 bp · −
rps8 · NC_071852.1 · 79,029–79,433 bp · −
rpl14 · NC_071852.1 · 79,603–79,971 bp · −
rpl16 · NC_071852.1 · 80,103–81,377 bp · −
rps3 · NC_071852.1 · 81,522–82,184 bp · −
rpl22 · NC_071852.1 · 82,169–82,636 bp · −
rps19 · NC_071852.1 · 82,706–82,984 bp · −
rpl2 · NC_071852.1 · 83,046–84,533 bp · −
rpl23 · NC_071852.1 · 84,552–84,833 bp · −
trnI-CAU · NC_071852.1 · 84,999–85,072 bp · −
trnL-CAA · NC_071852.1 · 92,559–92,639 bp · −
ndhB · NC_071852.1 · 93,200–95,407 bp · −
rps7 · NC_071852.1 · 95,673–96,140 bp · −
trnN-GUU · NC_071852.1 · 107,080–107,151 bp · −
ndhF · NC_071852.1 · 108,505–110,736 bp · −
ndhD · NC_071852.1 · 113,519–114,907 bp · −
psaC · NC_071852.1 · 115,143–115,388 bp · −
ndhE · NC_071852.1 · 115,623–115,928 bp · −
ndhG · NC_071852.1 · 116,152–116,682 bp · −
ndhI · NC_071852.1 · 117,067–117,573 bp · −
ndhA · NC_071852.1 · 117,657–119,746 bp · −
ndhH · NC_071852.1 · 119,748–120,929 bp · −
rps15 · NC_071852.1 · 121,029–121,301 bp · −
ycf1 · NC_071852.1 · 121,746–127,289 bp · −
trnR-ACG · NC_071852.1 · 128,216–128,294 bp · −
rrn5 · NC_071852.1 · 128,533–128,653 bp · −
rrn4.5 · NC_071852.1 · 128,914–129,016 bp · −
rrn23 · NC_071852.1 · 129,115–131,925 bp · −
trnA-UGC · NC_071852.1 · 132,091–132,968 bp · −
trnI-GAU · NC_071852.1 · 133,038–134,059 bp · −
rrn16 · NC_071852.1 · 134,358–135,848 bp · −
trnV-GAC · NC_071852.1 · 136,075–136,146 bp · −
ycf15 · NC_071852.1 · 142,467–142,715 bp · −
ycf2 · NC_071852.1 · 142,806–149,609 bp · −
psbK · NC_071852.1 · 7,289–7,474 bp · +
psbI · NC_071852.1 · 7,855–7,965 bp · +
trnG-UCC · NC_071852.1 · 8,921–9,672 bp · +
trnR-UCU · NC_071852.1 · 9,853–9,924 bp · +
trnC-GCA · NC_071852.1 · 27,855–27,925 bp · +
petN · NC_071852.1 · 28,086–28,175 bp · +
trnT-GGU · NC_071852.1 · 30,781–30,852 bp · +
psbD · NC_071852.1 · 32,193–33,254 bp · +
psbC · NC_071852.1 · 33,202–34,623 bp · +
psbZ · NC_071852.1 · 35,315–35,503 bp · +
trnG-GCC · NC_071852.1 · 35,777–35,847 bp · +
trnS-GGA · NC_071852.1 · 44,674–44,760 bp · +
trnL-UAA · NC_071852.1 · 46,801–47,354 bp · +
trnF-GAA · NC_071852.1 · 47,647–47,719 bp · +
trnM-CAU · NC_071852.1 · 51,822–51,894 bp · +
rbcL · NC_071852.1 · 54,782–56,215 bp · +
accD · NC_071852.1 · 56,900–58,381 bp · +
psaI · NC_071852.1 · 58,845–58,955 bp · +
ycf4 · NC_071852.1 · 59,405–59,959 bp · +
cemA · NC_071852.1 · 60,604–61,293 bp · +
petA · NC_071852.1 · 61,507–62,469 bp · +
petL · NC_071852.1 · 65,118–65,213 bp · +
petG · NC_071852.1 · 65,383–65,496 bp · +
psaJ · NC_071852.1 · 66,217–66,351 bp · +
rpl33 · NC_071852.1 · 66,799–67,002 bp · +
rps18 · NC_071852.1 · 67,173–67,478 bp · +
rps12 · NC_071852.1 · 137,783–138,576 bp · +
psbB · NC_071852.1 · 71,498–73,024 bp · +
psbT · NC_071852.1 · 73,200–73,301 bp · +
psbH · NC_071852.1 · 73,607–73,828 bp · +
petB · NC_071852.1 · 73,954–75,338 bp · +
petD · NC_071852.1 · 75,526–76,706 bp · +
ycf2 · NC_071852.1 · 85,161–91,964 bp · +
ycf15 · NC_071852.1 · 92,055–92,303 bp · +
trnV-GAC · NC_071852.1 · 98,624–98,695 bp · +
rrn16 · NC_071852.1 · 98,922–100,412 bp · +
trnI-GAU · NC_071852.1 · 100,711–101,732 bp · +
trnA-UGC · NC_071852.1 · 101,802–102,679 bp · +
rrn23 · NC_071852.1 · 102,845–105,655 bp · +
rrn4.5 · NC_071852.1 · 105,754–105,856 bp · +
rrn5 · NC_071852.1 · 106,117–106,237 bp · +
trnR-ACG · NC_071852.1 · 106,476–106,554 bp · +
ycf1 · NC_071852.1 · 107,481–108,611 bp · +
rpl32 · NC_071852.1 · 111,215–111,385 bp · +
trnL-UAG · NC_071852.1 · 112,111–112,190 bp · +
ccsA · NC_071852.1 · 112,294–113,271 bp · +
trnN-GUU · NC_071852.1 · 127,619–127,690 bp · +
rps7 · NC_071852.1 · 138,630–139,097 bp · +
ndhB · NC_071852.1 · 139,363–141,570 bp · +
trnL-CAA · NC_071852.1 · 142,131–142,211 bp · +
trnI-CAU · NC_071852.1 · 149,698–149,771 bp · +
rpl23 · NC_071852.1 · 149,937–150,218 bp · +
rpl2 · NC_071852.1 · 150,237–151,724 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Thymus linearis
ANNOTATED PLASTOME
NC_071852.1
151,828 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37957 75914 113871 151828 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 409 1467 1059 Locate
trnK-UUU gene − 1688 4228 2541 Locate
matK gene − 1968 3491 1524 Locate
rps16 gene − 4775 5919 1145 Locate
trnQ-UUG gene − 6837 6908 72 Locate
psbK gene + 7289 7474 186 Locate
psbI gene + 7855 7965 111 Locate
trnS-GCU gene − 8116 8203 88 Locate
trnG-UCC gene + 8921 9672 752 Locate
trnR-UCU gene + 9853 9924 72 Locate
atpA gene − 10031 11554 1524 Locate
atpF gene − 11651 12904 1254 Locate
atpH gene − 13171 13416 246 Locate
atpI gene − 14453 15196 744 Locate
rps2 gene − 15419 16129 711 Locate
rpoC2 gene − 16339 20532 4194 Locate
rpoC1 gene − 20682 23486 2805 Locate
rpoB gene − 23513 26725 3213 Locate
trnC-GCA gene + 27855 27925 71 Locate
petN gene + 28086 28175 90 Locate
psbM gene − 29152 29256 105 Locate
trnD-GUC gene − 29797 29870 74 Locate
trnY-GUA gene − 29981 30064 84 Locate
trnE-UUC gene − 30144 30216 73 Locate
trnT-GGU gene + 30781 30852 72 Locate
psbD gene + 32193 33254 1062 Locate
psbC gene + 33202 34623 1422 Locate
trnS-UGA gene − 34877 34969 93 Locate
psbZ gene + 35315 35503 189 Locate
trnG-GCC gene + 35777 35847 71 Locate
trnfM-CAU gene − 36011 36084 74 Locate
rps14 gene − 36229 36531 303 Locate
psaB gene − 36655 38859 2205 Locate
psaA gene − 38885 41137 2253 Locate
ycf3 gene − 41903 43831 1929 Locate
trnS-GGA gene + 44674 44760 87 Locate
rps4 gene − 45048 45653 606 Locate
trnT-UGU gene − 46047 46119 73 Locate
trnL-UAA gene + 46801 47354 554 Locate
trnF-GAA gene + 47647 47719 73 Locate
ndhJ gene − 48352 48828 477 Locate
ndhK gene − 48939 49616 678 Locate
ndhC gene − 49668 50030 363 Locate
trnV-UAC gene − 50999 51641 643 Locate
trnM-CAU gene + 51822 51894 73 Locate
atpE gene − 52090 52491 402 Locate
atpB gene − 52488 53978 1491 Locate
rbcL gene + 54782 56215 1434 Locate
accD gene + 56900 58381 1482 Locate
psaI gene + 58845 58955 111 Locate
ycf4 gene + 59405 59959 555 Locate
cemA gene + 60604 61293 690 Locate
petA gene + 61507 62469 963 Locate
psbJ gene − 63464 63586 123 Locate
psbL gene − 63721 63837 117 Locate
psbF gene − 63861 63980 120 Locate
psbE gene − 63995 64246 252 Locate
petL gene + 65118 65213 96 Locate
petG gene + 65383 65496 114 Locate
trnW-CCA gene − 65617 65690 74 Locate
trnP-UGG gene − 65864 65937 74 Locate
psaJ gene + 66217 66351 135 Locate
rpl33 gene + 66799 67002 204 Locate
rps18 gene + 67173 67478 306 Locate
rpl20 gene − 67712 68098 387 Locate
rps12 gene − 68902 69015 114 Locate
clpP gene − 69140 71046 1907 Locate
psbB gene + 71498 73024 1527 Locate
psbT gene + 73200 73301 102 Locate
psbN gene − 73370 73501 132 Locate
psbH gene + 73607 73828 222 Locate
petB gene + 73954 75338 1385 Locate
petD gene + 75526 76706 1181 Locate
rpoA gene − 76889 77896 1008 Locate
rps11 gene − 77968 78384 417 Locate
rpl36 gene − 78494 78607 114 Locate
infA gene − 78671 78904 234 Locate
rps8 gene − 79029 79433 405 Locate
rpl14 gene − 79603 79971 369 Locate
rpl16 gene − 80103 81377 1275 Locate
rps3 gene − 81522 82184 663 Locate
rpl22 gene − 82169 82636 468 Locate
rps19 gene − 82706 82984 279 Locate
rpl2 gene − 83046 84533 1488 Locate
rpl23 gene − 84552 84833 282 Locate
trnI-CAU gene − 84999 85072 74 Locate
ycf2 gene + 85161 91964 6804 Locate
ycf15 gene + 92055 92303 249 Locate
trnL-CAA gene − 92559 92639 81 Locate
ndhB gene − 93200 95407 2208 Locate
rps7 gene − 95673 96140 468 Locate
rps12 gene − 96194 96987 794 Locate
trnV-GAC gene + 98624 98695 72 Locate
rrn16 gene + 98922 100412 1491 Locate
trnI-GAU gene + 100711 101732 1022 Locate
trnA-UGC gene + 101802 102679 878 Locate
rrn23 gene + 102845 105655 2811 Locate
rrn4.5 gene + 105754 105856 103 Locate
rrn5 gene + 106117 106237 121 Locate
trnR-ACG gene + 106476 106554 79 Locate
trnN-GUU gene − 107080 107151 72 Locate
ycf1 gene + 107481 108611 1131 Locate
ndhF gene − 108505 110736 2232 Locate
rpl32 gene + 111215 111385 171 Locate
trnL-UAG gene + 112111 112190 80 Locate
ccsA gene + 112294 113271 978 Locate
ndhD gene − 113519 114907 1389 Locate
psaC gene − 115143 115388 246 Locate
ndhE gene − 115623 115928 306 Locate
ndhG gene − 116152 116682 531 Locate
ndhI gene − 117067 117573 507 Locate
ndhA gene − 117657 119746 2090 Locate
ndhH gene − 119748 120929 1182 Locate
rps15 gene − 121029 121301 273 Locate
ycf1 gene − 121746 127289 5544 Locate
trnN-GUU gene + 127619 127690 72 Locate
trnR-ACG gene − 128216 128294 79 Locate
rrn5 gene − 128533 128653 121 Locate
rrn4.5 gene − 128914 129016 103 Locate
rrn23 gene − 129115 131925 2811 Locate
trnA-UGC gene − 132091 132968 878 Locate
trnI-GAU gene − 133038 134059 1022 Locate
rrn16 gene − 134358 135848 1491 Locate
trnV-GAC gene − 136075 136146 72 Locate
rps12 gene + 137783 138576 794 Locate
rps7 gene + 138630 139097 468 Locate
ndhB gene + 139363 141570 2208 Locate
trnL-CAA gene + 142131 142211 81 Locate
ycf15 gene − 142467 142715 249 Locate
ycf2 gene − 142806 149609 6804 Locate
trnI-CAU gene + 149698 149771 74 Locate
rpl23 gene + 149937 150218 282 Locate
rpl2 gene + 150237 151724 1488 Locate
Status Available
Accession NC_071852.1
Length 151,828 bp
GC content 37.9%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources