Thymus mongolicus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_046520.1 · 11–84 bp · −
psbA · NC_046520.1 · 407–1,465 bp · −
trnK-UUU · NC_046520.1 · 1,686–4,286 bp · −
matK · NC_046520.1 · 2,026–3,549 bp · −
rps16 · NC_046520.1 · 4,833–5,977 bp · −
trnQ-UUG · NC_046520.1 · 6,895–6,966 bp · −
trnS-GCU · NC_046520.1 · 8,175–8,262 bp · −
atpA · NC_046520.1 · 10,090–11,613 bp · −
atpF · NC_046520.1 · 11,709–12,957 bp · −
atpH · NC_046520.1 · 13,224–13,469 bp · −
atpI · NC_046520.1 · 14,506–15,249 bp · −
rps2 · NC_046520.1 · 15,472–16,182 bp · −
rpoC2 · NC_046520.1 · 16,392–20,585 bp · −
rpoC1 · NC_046520.1 · 20,735–23,539 bp · −
rpoB · NC_046520.1 · 23,566–26,778 bp · −
psbM · NC_046520.1 · 29,205–29,309 bp · −
trnD-GUC · NC_046520.1 · 29,827–29,900 bp · −
trnY-GUA · NC_046520.1 · 30,011–30,094 bp · −
trnE-UUC · NC_046520.1 · 30,174–30,246 bp · −
trnS-UGA · NC_046520.1 · 34,901–34,993 bp · −
trnfM-CAU · NC_046520.1 · 36,032–36,105 bp · −
rps14 · NC_046520.1 · 36,250–36,552 bp · −
psaB · NC_046520.1 · 36,676–38,880 bp · −
psaA · NC_046520.1 · 38,906–41,158 bp · −
ycf3 · NC_046520.1 · 41,924–43,852 bp · −
rps4 · NC_046520.1 · 45,069–45,674 bp · −
trnT-UGU · NC_046520.1 · 46,068–46,140 bp · −
ndhJ · NC_046520.1 · 48,366–48,842 bp · −
ndhK · NC_046520.1 · 48,953–49,630 bp · −
ndhC · NC_046520.1 · 49,682–50,044 bp · −
trnV-UAC · NC_046520.1 · 51,013–51,655 bp · −
atpE · NC_046520.1 · 52,104–52,505 bp · −
atpB · NC_046520.1 · 52,502–54,076 bp · −
psbJ · NC_046520.1 · 63,477–63,599 bp · −
psbL · NC_046520.1 · 63,734–63,850 bp · −
psbF · NC_046520.1 · 63,874–63,993 bp · −
psbE · NC_046520.1 · 64,008–64,259 bp · −
trnW-CCA · NC_046520.1 · 65,630–65,703 bp · −
trnP-UGG · NC_046520.1 · 65,877–65,950 bp · −
rpl20 · NC_046520.1 · 67,725–68,111 bp · −
rps12 · NC_046520.1 · 68,915–69,028 bp · −
rps12 · NC_046520.1 · 96,209–97,002 bp · −
clpP · NC_046520.1 · 69,153–71,059 bp · −
psbN · NC_046520.1 · 73,383–73,514 bp · −
rpoA · NC_046520.1 · 76,901–77,908 bp · −
rps11 · NC_046520.1 · 77,980–78,396 bp · −
rpl36 · NC_046520.1 · 78,506–78,619 bp · −
infA · NC_046520.1 · 78,683–78,916 bp · −
rps8 · NC_046520.1 · 79,042–79,446 bp · −
rpl14 · NC_046520.1 · 79,618–79,986 bp · −
rpl16 · NC_046520.1 · 80,118–81,392 bp · −
rps3 · NC_046520.1 · 81,537–82,199 bp · −
rpl22 · NC_046520.1 · 82,184–82,651 bp · −
rps19 · NC_046520.1 · 82,721–82,870 bp · −
rpl2 · NC_046520.1 · 83,061–84,548 bp · −
rpl23 · NC_046520.1 · 84,567–84,848 bp · −
trnI-CAU · NC_046520.1 · 85,014–85,087 bp · −
trnL-CAA · NC_046520.1 · 92,574–92,654 bp · −
ndhB · NC_046520.1 · 93,215–95,422 bp · −
rps7 · NC_046520.1 · 95,688–96,155 bp · −
trnN-GUU · NC_046520.1 · 107,094–107,165 bp · −
ndhF · NC_046520.1 · 108,519–110,750 bp · −
ndhD · NC_046520.1 · 113,532–115,061 bp · −
psaC · NC_046520.1 · 115,156–115,401 bp · −
ndhE · NC_046520.1 · 115,636–115,941 bp · −
ndhG · NC_046520.1 · 116,165–116,695 bp · −
ndhI · NC_046520.1 · 117,080–117,586 bp · −
ndhA · NC_046520.1 · 117,670–119,759 bp · −
ndhH · NC_046520.1 · 119,761–120,942 bp · −
rps15 · NC_046520.1 · 121,042–121,314 bp · −
ycf1 · NC_046520.1 · 121,753–127,296 bp · −
trnR-ACG · NC_046520.1 · 128,222–128,295 bp · −
rrn5 · NC_046520.1 · 128,539–128,659 bp · −
rrn4.5 · NC_046520.1 · 128,920–129,022 bp · −
rrn23 · NC_046520.1 · 129,121–131,931 bp · −
trnA-UGC · NC_046520.1 · 132,097–132,974 bp · −
trnI-GAU · NC_046520.1 · 133,044–134,065 bp · −
rrn16 · NC_046520.1 · 134,364–135,854 bp · −
trnV-GAC · NC_046520.1 · 136,081–136,152 bp · −
ycf15 · NC_046520.1 · 142,473–142,736 bp · −
ycf2 · NC_046520.1 · 142,812–149,615 bp · −
psbK · NC_046520.1 · 7,347–7,532 bp · +
psbI · NC_046520.1 · 7,914–8,024 bp · +
trnG-UCC · NC_046520.1 · 8,980–9,730 bp · +
trnR-UCU · NC_046520.1 · 9,912–9,983 bp · +
trnC-GCA · NC_046520.1 · 27,908–27,978 bp · +
petN · NC_046520.1 · 28,139–28,228 bp · +
trnT-GGU · NC_046520.1 · 30,811–30,882 bp · +
psbD · NC_046520.1 · 32,223–33,284 bp · +
psbC · NC_046520.1 · 33,232–34,653 bp · +
psbZ · NC_046520.1 · 35,339–35,527 bp · +
trnG-GCC · NC_046520.1 · 35,799–35,869 bp · +
trnS-GGA · NC_046520.1 · 44,695–44,781 bp · +
trnL-UAA · NC_046520.1 · 46,815–47,368 bp · +
trnF-GAA · NC_046520.1 · 47,662–47,734 bp · +
trnM-CAU · NC_046520.1 · 51,836–51,908 bp · +
rbcL · NC_046520.1 · 54,796–56,229 bp · +
accD · NC_046520.1 · 56,914–58,395 bp · +
psaI · NC_046520.1 · 58,859–58,969 bp · +
ycf4 · NC_046520.1 · 59,418–59,972 bp · +
cemA · NC_046520.1 · 60,617–61,306 bp · +
petA · NC_046520.1 · 61,520–62,482 bp · +
petL · NC_046520.1 · 65,131–65,226 bp · +
petG · NC_046520.1 · 65,396–65,509 bp · +
psaJ · NC_046520.1 · 66,230–66,364 bp · +
rpl33 · NC_046520.1 · 66,812–67,015 bp · +
rps18 · NC_046520.1 · 67,186–67,491 bp · +
rps12 · NC_046520.1 · 137,789–138,582 bp · +
psbB · NC_046520.1 · 71,511–73,037 bp · +
psbT · NC_046520.1 · 73,213–73,314 bp · +
psbH · NC_046520.1 · 73,620–73,841 bp · +
petB · NC_046520.1 · 73,967–75,350 bp · +
petD · NC_046520.1 · 75,538–76,718 bp · +
ycf2 · NC_046520.1 · 85,176–91,979 bp · +
ycf15 · NC_046520.1 · 92,055–92,318 bp · +
trnV-GAC · NC_046520.1 · 98,639–98,710 bp · +
rrn16 · NC_046520.1 · 98,937–100,427 bp · +
trnI-GAU · NC_046520.1 · 100,726–101,747 bp · +
trnA-UGC · NC_046520.1 · 101,817–102,694 bp · +
rrn23 · NC_046520.1 · 102,860–105,670 bp · +
rrn4.5 · NC_046520.1 · 105,769–105,871 bp · +
rrn5 · NC_046520.1 · 106,132–106,252 bp · +
trnR-ACG · NC_046520.1 · 106,496–106,569 bp · +
ycf1 · NC_046520.1 · 107,495–108,563 bp · +
rpl32 · NC_046520.1 · 111,228–111,398 bp · +
trnL-UAG · NC_046520.1 · 112,125–112,204 bp · +
ccsA · NC_046520.1 · 112,308–113,285 bp · +
trnN-GUU · NC_046520.1 · 127,626–127,697 bp · +
rps7 · NC_046520.1 · 138,636–139,103 bp · +
ndhB · NC_046520.1 · 139,369–141,576 bp · +
trnL-CAA · NC_046520.1 · 142,137–142,217 bp · +
trnI-CAU · NC_046520.1 · 149,704–149,777 bp · +
rpl23 · NC_046520.1 · 149,943–150,224 bp · +
rpl2 · NC_046520.1 · 150,243–151,730 bp · +
rps19 · NC_046520.1 · 151,792–151,834 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Thymus mongolicus
ANNOTATED PLASTOME
NC_046520.1
151,834 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37958 75917 113876 151834 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 407 1465 1059 Locate
trnK-UUU gene − 1686 4286 2601 Locate
matK gene − 2026 3549 1524 Locate
rps16 gene − 4833 5977 1145 Locate
trnQ-UUG gene − 6895 6966 72 Locate
psbK gene + 7347 7532 186 Locate
psbI gene + 7914 8024 111 Locate
trnS-GCU gene − 8175 8262 88 Locate
trnG-UCC gene + 8980 9730 751 Locate
trnR-UCU gene + 9912 9983 72 Locate
atpA gene − 10090 11613 1524 Locate
atpF gene − 11709 12957 1249 Locate
atpH gene − 13224 13469 246 Locate
atpI gene − 14506 15249 744 Locate
rps2 gene − 15472 16182 711 Locate
rpoC2 gene − 16392 20585 4194 Locate
rpoC1 gene − 20735 23539 2805 Locate
rpoB gene − 23566 26778 3213 Locate
trnC-GCA gene + 27908 27978 71 Locate
petN gene + 28139 28228 90 Locate
psbM gene − 29205 29309 105 Locate
trnD-GUC gene − 29827 29900 74 Locate
trnY-GUA gene − 30011 30094 84 Locate
trnE-UUC gene − 30174 30246 73 Locate
trnT-GGU gene + 30811 30882 72 Locate
psbD gene + 32223 33284 1062 Locate
psbC gene + 33232 34653 1422 Locate
trnS-UGA gene − 34901 34993 93 Locate
psbZ gene + 35339 35527 189 Locate
trnG-GCC gene + 35799 35869 71 Locate
trnfM-CAU gene − 36032 36105 74 Locate
rps14 gene − 36250 36552 303 Locate
psaB gene − 36676 38880 2205 Locate
psaA gene − 38906 41158 2253 Locate
ycf3 gene − 41924 43852 1929 Locate
trnS-GGA gene + 44695 44781 87 Locate
rps4 gene − 45069 45674 606 Locate
trnT-UGU gene − 46068 46140 73 Locate
trnL-UAA gene + 46815 47368 554 Locate
trnF-GAA gene + 47662 47734 73 Locate
ndhJ gene − 48366 48842 477 Locate
ndhK gene − 48953 49630 678 Locate
ndhC gene − 49682 50044 363 Locate
trnV-UAC gene − 51013 51655 643 Locate
trnM-CAU gene + 51836 51908 73 Locate
atpE gene − 52104 52505 402 Locate
atpB gene − 52502 54076 1575 Locate
rbcL gene + 54796 56229 1434 Locate
accD gene + 56914 58395 1482 Locate
psaI gene + 58859 58969 111 Locate
ycf4 gene + 59418 59972 555 Locate
cemA gene + 60617 61306 690 Locate
petA gene + 61520 62482 963 Locate
psbJ gene − 63477 63599 123 Locate
psbL gene − 63734 63850 117 Locate
psbF gene − 63874 63993 120 Locate
psbE gene − 64008 64259 252 Locate
petL gene + 65131 65226 96 Locate
petG gene + 65396 65509 114 Locate
trnW-CCA gene − 65630 65703 74 Locate
trnP-UGG gene − 65877 65950 74 Locate
psaJ gene + 66230 66364 135 Locate
rpl33 gene + 66812 67015 204 Locate
rps18 gene + 67186 67491 306 Locate
rpl20 gene − 67725 68111 387 Locate
rps12 gene − 68915 69028 114 Locate
clpP gene − 69153 71059 1907 Locate
psbB gene + 71511 73037 1527 Locate
psbT gene + 73213 73314 102 Locate
psbN gene − 73383 73514 132 Locate
psbH gene + 73620 73841 222 Locate
petB gene + 73967 75350 1384 Locate
petD gene + 75538 76718 1181 Locate
rpoA gene − 76901 77908 1008 Locate
rps11 gene − 77980 78396 417 Locate
rpl36 gene − 78506 78619 114 Locate
infA gene − 78683 78916 234 Locate
rps8 gene − 79042 79446 405 Locate
rpl14 gene − 79618 79986 369 Locate
rpl16 gene − 80118 81392 1275 Locate
rps3 gene − 81537 82199 663 Locate
rpl22 gene − 82184 82651 468 Locate
rps19 gene − 82721 82870 150 Locate
rpl2 gene − 83061 84548 1488 Locate
rpl23 gene − 84567 84848 282 Locate
trnI-CAU gene − 85014 85087 74 Locate
ycf2 gene + 85176 91979 6804 Locate
ycf15 gene + 92055 92318 264 Locate
trnL-CAA gene − 92574 92654 81 Locate
ndhB gene − 93215 95422 2208 Locate
rps7 gene − 95688 96155 468 Locate
rps12 gene − 96209 97002 794 Locate
trnV-GAC gene + 98639 98710 72 Locate
rrn16 gene + 98937 100427 1491 Locate
trnI-GAU gene + 100726 101747 1022 Locate
trnA-UGC gene + 101817 102694 878 Locate
rrn23 gene + 102860 105670 2811 Locate
rrn4.5 gene + 105769 105871 103 Locate
rrn5 gene + 106132 106252 121 Locate
trnR-ACG gene + 106496 106569 74 Locate
trnN-GUU gene − 107094 107165 72 Locate
ycf1 gene + 107495 108563 1069 Locate
ndhF gene − 108519 110750 2232 Locate
rpl32 gene + 111228 111398 171 Locate
trnL-UAG gene + 112125 112204 80 Locate
ccsA gene + 112308 113285 978 Locate
ndhD gene − 113532 115061 1530 Locate
psaC gene − 115156 115401 246 Locate
ndhE gene − 115636 115941 306 Locate
ndhG gene − 116165 116695 531 Locate
ndhI gene − 117080 117586 507 Locate
ndhA gene − 117670 119759 2090 Locate
ndhH gene − 119761 120942 1182 Locate
rps15 gene − 121042 121314 273 Locate
ycf1 gene − 121753 127296 5544 Locate
trnN-GUU gene + 127626 127697 72 Locate
trnR-ACG gene − 128222 128295 74 Locate
rrn5 gene − 128539 128659 121 Locate
rrn4.5 gene − 128920 129022 103 Locate
rrn23 gene − 129121 131931 2811 Locate
trnA-UGC gene − 132097 132974 878 Locate
trnI-GAU gene − 133044 134065 1022 Locate
rrn16 gene − 134364 135854 1491 Locate
trnV-GAC gene − 136081 136152 72 Locate
rps12 gene + 137789 138582 794 Locate
rps7 gene + 138636 139103 468 Locate
ndhB gene + 139369 141576 2208 Locate
trnL-CAA gene + 142137 142217 81 Locate
ycf15 gene − 142473 142736 264 Locate
ycf2 gene − 142812 149615 6804 Locate
trnI-CAU gene + 149704 149777 74 Locate
rpl23 gene + 149943 150224 282 Locate
rpl2 gene + 150243 151730 1488 Locate
rps19 gene + 151792 151834 43 Locate
Status Available
Accession NC_046520.1
Length 151,834 bp
GC content 37.9%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources