Thymus praecox subsp. polytrichus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP272181.1 · 11–84 bp · −
psbA · PP272181.1 · 407–1,465 bp · −
trnK-UUU · PP272181.1 · 1,686–4,226 bp · −
matK · PP272181.1 · 1,966–3,489 bp · −
rps16 · PP272181.1 · 4,773–5,917 bp · −
trnQ-UUG · PP272181.1 · 6,831–6,902 bp · −
trnS-GCU · PP272181.1 · 8,118–8,205 bp · −
atpA · PP272181.1 · 10,032–11,555 bp · −
atpF · PP272181.1 · 11,650–12,899 bp · −
atpH · PP272181.1 · 13,166–13,411 bp · −
atpI · PP272181.1 · 14,448–15,191 bp · −
rps2 · PP272181.1 · 15,414–16,124 bp · −
rpoC2 · PP272181.1 · 16,332–20,525 bp · −
rpoC1 · PP272181.1 · 20,675–23,479 bp · −
rpoB · PP272181.1 · 23,506–26,718 bp · −
psbM · PP272181.1 · 29,146–29,250 bp · −
trnD-GUC · PP272181.1 · 29,762–29,835 bp · −
trnY-GUA · PP272181.1 · 29,946–30,029 bp · −
trnE-UUC · PP272181.1 · 30,109–30,181 bp · −
trnS-UGA · PP272181.1 · 34,829–34,921 bp · −
trnfM-CAU · PP272181.1 · 35,963–36,036 bp · −
rps14 · PP272181.1 · 36,181–36,483 bp · −
psaB · PP272181.1 · 36,607–38,811 bp · −
psaA · PP272181.1 · 38,837–41,089 bp · −
ycf3 · PP272181.1 · 41,855–43,782 bp · −
rps4 · PP272181.1 · 44,994–45,599 bp · −
trnT-UGU · PP272181.1 · 45,998–46,070 bp · −
ndhJ · PP272181.1 · 48,292–48,768 bp · −
ndhK · PP272181.1 · 48,879–49,556 bp · −
ndhC · PP272181.1 · 49,608–49,970 bp · −
trnV-UAC · PP272181.1 · 50,939–51,581 bp · −
atpE · PP272181.1 · 52,030–52,431 bp · −
atpB · PP272181.1 · 52,428–53,918 bp · −
psbJ · PP272181.1 · 63,412–63,534 bp · −
psbL · PP272181.1 · 63,669–63,785 bp · −
psbF · PP272181.1 · 63,809–63,928 bp · −
psbE · PP272181.1 · 63,943–64,194 bp · −
trnW-CCA · PP272181.1 · 65,565–65,638 bp · −
trnP-UGG · PP272181.1 · 65,812–65,885 bp · −
rpl20 · PP272181.1 · 67,659–68,045 bp · −
rps12 · PP272181.1 · 68,849–68,962 bp · −
rps12 · PP272181.1 · 96,135–96,928 bp · −
clpP · PP272181.1 · 69,087–70,993 bp · −
psbN · PP272181.1 · 73,317–73,448 bp · −
rpoA · PP272181.1 · 76,835–77,842 bp · −
rps11 · PP272181.1 · 77,914–78,330 bp · −
rpl36 · PP272181.1 · 78,440–78,553 bp · −
infA · PP272181.1 · 78,617–78,850 bp · −
rps8 · PP272181.1 · 78,974–79,378 bp · −
rpl14 · PP272181.1 · 79,545–79,913 bp · −
rpl16 · PP272181.1 · 80,045–81,319 bp · −
rps3 · PP272181.1 · 81,464–82,126 bp · −
rpl22 · PP272181.1 · 82,111–82,578 bp · −
rps19 · PP272181.1 · 82,648–82,926 bp · −
rpl2 · PP272181.1 · 82,987–84,474 bp · −
rpl23 · PP272181.1 · 84,493–84,774 bp · −
trnI-CAU · PP272181.1 · 84,940–85,013 bp · −
trnL-CAA · PP272181.1 · 92,500–92,580 bp · −
ndhB · PP272181.1 · 93,141–95,348 bp · −
rps7 · PP272181.1 · 95,614–96,081 bp · −
trnN-GUU · PP272181.1 · 107,027–107,098 bp · −
ndhF · PP272181.1 · 108,452–110,683 bp · −
ndhD · PP272181.1 · 113,468–114,856 bp · −
psaC · PP272181.1 · 115,091–115,336 bp · −
ndhE · PP272181.1 · 115,571–115,876 bp · −
ndhG · PP272181.1 · 116,100–116,630 bp · −
ndhI · PP272181.1 · 117,013–117,519 bp · −
ndhA · PP272181.1 · 117,595–119,684 bp · −
ndhH · PP272181.1 · 119,686–120,867 bp · −
rps15 · PP272181.1 · 120,967–121,239 bp · −
ycf1 · PP272181.1 · 121,660–127,203 bp · −
trnR-ACG · PP272181.1 · 128,130–128,208 bp · −
rrn5 · PP272181.1 · 128,447–128,567 bp · −
rrn4.5 · PP272181.1 · 128,828–128,930 bp · −
rrn23 · PP272181.1 · 129,029–131,839 bp · −
trnA-UGC · PP272181.1 · 132,005–132,882 bp · −
trnI-GAU · PP272181.1 · 132,952–133,973 bp · −
rrn16 · PP272181.1 · 134,272–135,762 bp · −
trnV-GAC · PP272181.1 · 135,989–136,060 bp · −
ycf15 · PP272181.1 · 142,387–142,584 bp · −
ycf2 · PP272181.1 · 142,726–149,529 bp · −
psbK · PP272181.1 · 7,283–7,468 bp · +
psbI · PP272181.1 · 7,856–7,966 bp · +
trnG-UCC · PP272181.1 · 8,922–9,673 bp · +
trnR-UCU · PP272181.1 · 9,854–9,925 bp · +
trnC-GCA · PP272181.1 · 27,848–27,918 bp · +
petN · PP272181.1 · 28,079–28,168 bp · +
trnT-GGU · PP272181.1 · 30,742–30,813 bp · +
psbD · PP272181.1 · 32,154–33,215 bp · +
psbC · PP272181.1 · 33,163–34,584 bp · +
psbZ · PP272181.1 · 35,268–35,456 bp · +
trnG-GCC · PP272181.1 · 35,728–35,798 bp · +
trnS-GGA · PP272181.1 · 44,620–44,706 bp · +
trnL-UAA · PP272181.1 · 46,739–47,293 bp · +
trnF-GAA · PP272181.1 · 47,586–47,658 bp · +
trnM-CAU · PP272181.1 · 51,762–51,834 bp · +
rbcL · PP272181.1 · 54,722–56,155 bp · +
accD · PP272181.1 · 56,840–58,321 bp · +
psaI · PP272181.1 · 58,791–58,901 bp · +
ycf4 · PP272181.1 · 59,350–59,904 bp · +
cemA · PP272181.1 · 60,551–61,240 bp · +
petA · PP272181.1 · 61,454–62,416 bp · +
petL · PP272181.1 · 65,066–65,161 bp · +
petG · PP272181.1 · 65,331–65,444 bp · +
psaJ · PP272181.1 · 66,165–66,299 bp · +
rpl33 · PP272181.1 · 66,747–66,950 bp · +
rps18 · PP272181.1 · 67,121–67,426 bp · +
rps12 · PP272181.1 · 137,703–138,496 bp · +
psbB · PP272181.1 · 71,445–72,971 bp · +
psbT · PP272181.1 · 73,147–73,248 bp · +
psbH · PP272181.1 · 73,554–73,775 bp · +
petB · PP272181.1 · 73,901–75,284 bp · +
petD · PP272181.1 · 75,472–76,652 bp · +
ycf2 · PP272181.1 · 85,102–91,905 bp · +
ycf15 · PP272181.1 · 92,047–92,244 bp · +
trnV-GAC · PP272181.1 · 98,571–98,642 bp · +
rrn16 · PP272181.1 · 98,869–100,359 bp · +
trnI-GAU · PP272181.1 · 100,658–101,679 bp · +
trnA-UGC · PP272181.1 · 101,749–102,626 bp · +
rrn23 · PP272181.1 · 102,792–105,602 bp · +
rrn4.5 · PP272181.1 · 105,701–105,803 bp · +
rrn5 · PP272181.1 · 106,064–106,184 bp · +
trnR-ACG · PP272181.1 · 106,423–106,501 bp · +
ycf1 · PP272181.1 · 107,428–108,558 bp · +
rpl32 · PP272181.1 · 111,163–111,333 bp · +
trnL-UAG · PP272181.1 · 112,062–112,141 bp · +
ccsA · PP272181.1 · 112,244–113,221 bp · +
trnN-GUU · PP272181.1 · 127,533–127,604 bp · +
rps7 · PP272181.1 · 138,550–139,017 bp · +
ndhB · PP272181.1 · 139,283–141,490 bp · +
trnL-CAA · PP272181.1 · 142,051–142,131 bp · +
trnI-CAU · PP272181.1 · 149,618–149,691 bp · +
rpl23 · PP272181.1 · 149,857–150,138 bp · +
rpl2 · PP272181.1 · 150,157–151,644 bp · +
rps19 · PP272181.1 · 151,705–151,747 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Thymus praecox subsp. polytrichus
ANNOTATED PLASTOME
PP272181.1
151,747 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37937 75874 113810 151747 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 407 1465 1059 Locate
trnK-UUU gene − 1686 4226 2541 Locate
matK gene − 1966 3489 1524 Locate
rps16 gene − 4773 5917 1145 Locate
trnQ-UUG gene − 6831 6902 72 Locate
psbK gene + 7283 7468 186 Locate
psbI gene + 7856 7966 111 Locate
trnS-GCU gene − 8118 8205 88 Locate
trnG-UCC gene + 8922 9673 752 Locate
trnR-UCU gene + 9854 9925 72 Locate
atpA gene − 10032 11555 1524 Locate
atpF gene − 11650 12899 1250 Locate
atpH gene − 13166 13411 246 Locate
atpI gene − 14448 15191 744 Locate
rps2 gene − 15414 16124 711 Locate
rpoC2 gene − 16332 20525 4194 Locate
rpoC1 gene − 20675 23479 2805 Locate
rpoB gene − 23506 26718 3213 Locate
trnC-GCA gene + 27848 27918 71 Locate
petN gene + 28079 28168 90 Locate
psbM gene − 29146 29250 105 Locate
trnD-GUC gene − 29762 29835 74 Locate
trnY-GUA gene − 29946 30029 84 Locate
trnE-UUC gene − 30109 30181 73 Locate
trnT-GGU gene + 30742 30813 72 Locate
psbD gene + 32154 33215 1062 Locate
psbC gene + 33163 34584 1422 Locate
trnS-UGA gene − 34829 34921 93 Locate
psbZ gene + 35268 35456 189 Locate
trnG-GCC gene + 35728 35798 71 Locate
trnfM-CAU gene − 35963 36036 74 Locate
rps14 gene − 36181 36483 303 Locate
psaB gene − 36607 38811 2205 Locate
psaA gene − 38837 41089 2253 Locate
ycf3 gene − 41855 43782 1928 Locate
trnS-GGA gene + 44620 44706 87 Locate
rps4 gene − 44994 45599 606 Locate
trnT-UGU gene − 45998 46070 73 Locate
trnL-UAA gene + 46739 47293 555 Locate
trnF-GAA gene + 47586 47658 73 Locate
ndhJ gene − 48292 48768 477 Locate
ndhK gene − 48879 49556 678 Locate
ndhC gene − 49608 49970 363 Locate
trnV-UAC gene − 50939 51581 643 Locate
trnM-CAU gene + 51762 51834 73 Locate
atpE gene − 52030 52431 402 Locate
atpB gene − 52428 53918 1491 Locate
rbcL gene + 54722 56155 1434 Locate
accD gene + 56840 58321 1482 Locate
psaI gene + 58791 58901 111 Locate
ycf4 gene + 59350 59904 555 Locate
cemA gene + 60551 61240 690 Locate
petA gene + 61454 62416 963 Locate
psbJ gene − 63412 63534 123 Locate
psbL gene − 63669 63785 117 Locate
psbF gene − 63809 63928 120 Locate
psbE gene − 63943 64194 252 Locate
petL gene + 65066 65161 96 Locate
petG gene + 65331 65444 114 Locate
trnW-CCA gene − 65565 65638 74 Locate
trnP-UGG gene − 65812 65885 74 Locate
psaJ gene + 66165 66299 135 Locate
rpl33 gene + 66747 66950 204 Locate
rps18 gene + 67121 67426 306 Locate
rpl20 gene − 67659 68045 387 Locate
rps12 gene − 68849 68962 114 Locate
clpP gene − 69087 70993 1907 Locate
psbB gene + 71445 72971 1527 Locate
psbT gene + 73147 73248 102 Locate
psbN gene − 73317 73448 132 Locate
psbH gene + 73554 73775 222 Locate
petB gene + 73901 75284 1384 Locate
petD gene + 75472 76652 1181 Locate
rpoA gene − 76835 77842 1008 Locate
rps11 gene − 77914 78330 417 Locate
rpl36 gene − 78440 78553 114 Locate
infA gene − 78617 78850 234 Locate
rps8 gene − 78974 79378 405 Locate
rpl14 gene − 79545 79913 369 Locate
rpl16 gene − 80045 81319 1275 Locate
rps3 gene − 81464 82126 663 Locate
rpl22 gene − 82111 82578 468 Locate
rps19 gene − 82648 82926 279 Locate
rpl2 gene − 82987 84474 1488 Locate
rpl23 gene − 84493 84774 282 Locate
trnI-CAU gene − 84940 85013 74 Locate
ycf2 gene + 85102 91905 6804 Locate
ycf15 gene + 92047 92244 198 Locate
trnL-CAA gene − 92500 92580 81 Locate
ndhB gene − 93141 95348 2208 Locate
rps7 gene − 95614 96081 468 Locate
rps12 gene − 96135 96928 794 Locate
trnV-GAC gene + 98571 98642 72 Locate
rrn16 gene + 98869 100359 1491 Locate
trnI-GAU gene + 100658 101679 1022 Locate
trnA-UGC gene + 101749 102626 878 Locate
rrn23 gene + 102792 105602 2811 Locate
rrn4.5 gene + 105701 105803 103 Locate
rrn5 gene + 106064 106184 121 Locate
trnR-ACG gene + 106423 106501 79 Locate
trnN-GUU gene − 107027 107098 72 Locate
ycf1 gene + 107428 108558 1131 Locate
ndhF gene − 108452 110683 2232 Locate
rpl32 gene + 111163 111333 171 Locate
trnL-UAG gene + 112062 112141 80 Locate
ccsA gene + 112244 113221 978 Locate
ndhD gene − 113468 114856 1389 Locate
psaC gene − 115091 115336 246 Locate
ndhE gene − 115571 115876 306 Locate
ndhG gene − 116100 116630 531 Locate
ndhI gene − 117013 117519 507 Locate
ndhA gene − 117595 119684 2090 Locate
ndhH gene − 119686 120867 1182 Locate
rps15 gene − 120967 121239 273 Locate
ycf1 gene − 121660 127203 5544 Locate
trnN-GUU gene + 127533 127604 72 Locate
trnR-ACG gene − 128130 128208 79 Locate
rrn5 gene − 128447 128567 121 Locate
rrn4.5 gene − 128828 128930 103 Locate
rrn23 gene − 129029 131839 2811 Locate
trnA-UGC gene − 132005 132882 878 Locate
trnI-GAU gene − 132952 133973 1022 Locate
rrn16 gene − 134272 135762 1491 Locate
trnV-GAC gene − 135989 136060 72 Locate
rps12 gene + 137703 138496 794 Locate
rps7 gene + 138550 139017 468 Locate
ndhB gene + 139283 141490 2208 Locate
trnL-CAA gene + 142051 142131 81 Locate
ycf15 gene − 142387 142584 198 Locate
ycf2 gene − 142726 149529 6804 Locate
trnI-CAU gene + 149618 149691 74 Locate
rpl23 gene + 149857 150138 282 Locate
rpl2 gene + 150157 151644 1488 Locate
rps19 gene + 151705 151747 43 Locate
Status Available
Accession PP272181.1
Length 151,747 bp
GC content 37.9%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources