Thymus praecox subsp. praecox chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP272182.1 · 11–84 bp · −
psbA · PP272182.1 · 407–1,465 bp · −
trnK-UUU · PP272182.1 · 1,686–4,226 bp · −
matK · PP272182.1 · 1,966–3,489 bp · −
rps16 · PP272182.1 · 4,773–5,917 bp · −
trnQ-UUG · PP272182.1 · 6,833–6,904 bp · −
trnS-GCU · PP272182.1 · 8,121–8,208 bp · −
atpA · PP272182.1 · 10,035–11,558 bp · −
atpF · PP272182.1 · 11,653–12,900 bp · −
atpH · PP272182.1 · 13,167–13,412 bp · −
atpI · PP272182.1 · 14,450–15,193 bp · −
rps2 · PP272182.1 · 15,416–16,126 bp · −
rpoC2 · PP272182.1 · 16,335–20,528 bp · −
rpoC1 · PP272182.1 · 20,678–23,482 bp · −
rpoB · PP272182.1 · 23,509–26,721 bp · −
psbM · PP272182.1 · 29,148–29,252 bp · −
trnD-GUC · PP272182.1 · 29,770–29,843 bp · −
trnY-GUA · PP272182.1 · 29,954–30,037 bp · −
trnE-UUC · PP272182.1 · 30,117–30,189 bp · −
trnS-UGA · PP272182.1 · 34,842–34,934 bp · −
trnfM-CAU · PP272182.1 · 35,973–36,046 bp · −
rps14 · PP272182.1 · 36,191–36,493 bp · −
psaB · PP272182.1 · 36,617–38,821 bp · −
psaA · PP272182.1 · 38,847–41,099 bp · −
ycf3 · PP272182.1 · 41,870–43,798 bp · −
rps4 · PP272182.1 · 45,015–45,620 bp · −
trnT-UGU · PP272182.1 · 46,015–46,087 bp · −
ndhJ · PP272182.1 · 48,321–48,797 bp · −
ndhK · PP272182.1 · 48,908–49,585 bp · −
ndhC · PP272182.1 · 49,637–49,999 bp · −
trnV-UAC · PP272182.1 · 50,968–51,610 bp · −
atpE · PP272182.1 · 52,059–52,460 bp · −
atpB · PP272182.1 · 52,457–53,947 bp · −
psbJ · PP272182.1 · 63,424–63,546 bp · −
psbL · PP272182.1 · 63,681–63,797 bp · −
psbF · PP272182.1 · 63,821–63,940 bp · −
psbE · PP272182.1 · 63,955–64,206 bp · −
trnW-CCA · PP272182.1 · 65,577–65,650 bp · −
trnP-UGG · PP272182.1 · 65,824–65,897 bp · −
rpl20 · PP272182.1 · 67,672–68,058 bp · −
rps12 · PP272182.1 · 68,862–68,975 bp · −
rps12 · PP272182.1 · 96,144–96,937 bp · −
clpP · PP272182.1 · 69,100–71,007 bp · −
psbN · PP272182.1 · 73,331–73,462 bp · −
rpoA · PP272182.1 · 76,849–77,856 bp · −
rps11 · PP272182.1 · 77,928–78,344 bp · −
rpl36 · PP272182.1 · 78,454–78,567 bp · −
infA · PP272182.1 · 78,631–78,864 bp · −
rps8 · PP272182.1 · 78,989–79,393 bp · −
rpl14 · PP272182.1 · 79,565–79,933 bp · −
rpl16 · PP272182.1 · 80,065–81,339 bp · −
rps3 · PP272182.1 · 81,491–82,153 bp · −
rpl22 · PP272182.1 · 82,138–82,605 bp · −
rps19 · PP272182.1 · 82,675–82,953 bp · −
rpl2 · PP272182.1 · 83,014–84,501 bp · −
rpl23 · PP272182.1 · 84,520–84,801 bp · −
trnI-CAU · PP272182.1 · 84,967–85,040 bp · −
trnL-CAA · PP272182.1 · 92,509–92,589 bp · −
ndhB · PP272182.1 · 93,150–95,357 bp · −
rps7 · PP272182.1 · 95,623–96,090 bp · −
trnN-GUU · PP272182.1 · 107,030–107,101 bp · −
ndhF · PP272182.1 · 108,455–110,686 bp · −
ndhD · PP272182.1 · 113,473–114,861 bp · −
psaC · PP272182.1 · 115,097–115,342 bp · −
ndhE · PP272182.1 · 115,577–115,882 bp · −
ndhG · PP272182.1 · 116,106–116,636 bp · −
ndhI · PP272182.1 · 117,021–117,527 bp · −
ndhA · PP272182.1 · 117,611–119,700 bp · −
ndhH · PP272182.1 · 119,702–120,883 bp · −
rps15 · PP272182.1 · 120,983–121,255 bp · −
ycf1 · PP272182.1 · 121,700–127,243 bp · −
trnR-ACG · PP272182.1 · 128,170–128,248 bp · −
rrn5 · PP272182.1 · 128,487–128,607 bp · −
rrn4.5 · PP272182.1 · 128,868–128,970 bp · −
rrn23 · PP272182.1 · 129,069–131,879 bp · −
trnA-UGC · PP272182.1 · 132,045–132,922 bp · −
trnI-GAU · PP272182.1 · 132,992–134,013 bp · −
rrn16 · PP272182.1 · 134,312–135,802 bp · −
trnV-GAC · PP272182.1 · 136,029–136,100 bp · −
ycf15 · PP272182.1 · 142,421–142,618 bp · −
ycf2 · PP272182.1 · 142,760–149,545 bp · −
psbK · PP272182.1 · 7,285–7,470 bp · +
psbI · PP272182.1 · 7,859–7,969 bp · +
trnG-UCC · PP272182.1 · 8,925–9,676 bp · +
trnR-UCU · PP272182.1 · 9,857–9,928 bp · +
trnC-GCA · PP272182.1 · 27,851–27,921 bp · +
petN · PP272182.1 · 28,082–28,171 bp · +
trnT-GGU · PP272182.1 · 30,752–30,823 bp · +
psbD · PP272182.1 · 32,164–33,225 bp · +
psbC · PP272182.1 · 33,173–34,594 bp · +
psbZ · PP272182.1 · 35,280–35,468 bp · +
trnG-GCC · PP272182.1 · 35,740–35,810 bp · +
trnS-GGA · PP272182.1 · 44,641–44,727 bp · +
trnL-UAA · PP272182.1 · 46,770–47,323 bp · +
trnF-GAA · PP272182.1 · 47,616–47,688 bp · +
trnM-CAU · PP272182.1 · 51,791–51,863 bp · +
rbcL · PP272182.1 · 54,751–56,184 bp · +
accD · PP272182.1 · 56,856–58,337 bp · +
psaI · PP272182.1 · 58,801–58,911 bp · +
ycf4 · PP272182.1 · 59,362–59,916 bp · +
cemA · PP272182.1 · 60,564–61,253 bp · +
petA · PP272182.1 · 61,467–62,429 bp · +
petL · PP272182.1 · 65,078–65,173 bp · +
petG · PP272182.1 · 65,343–65,456 bp · +
psaJ · PP272182.1 · 66,177–66,311 bp · +
rpl33 · PP272182.1 · 66,759–66,962 bp · +
rps18 · PP272182.1 · 67,133–67,438 bp · +
rps12 · PP272182.1 · 137,737–138,530 bp · +
psbB · PP272182.1 · 71,459–72,985 bp · +
psbT · PP272182.1 · 73,161–73,262 bp · +
psbH · PP272182.1 · 73,568–73,789 bp · +
petB · PP272182.1 · 73,915–75,298 bp · +
petD · PP272182.1 · 75,486–76,666 bp · +
ycf2 · PP272182.1 · 85,129–91,914 bp · +
ycf15 · PP272182.1 · 92,056–92,253 bp · +
trnV-GAC · PP272182.1 · 98,574–98,645 bp · +
rrn16 · PP272182.1 · 98,872–100,362 bp · +
trnI-GAU · PP272182.1 · 100,661–101,682 bp · +
trnA-UGC · PP272182.1 · 101,752–102,629 bp · +
rrn23 · PP272182.1 · 102,795–105,605 bp · +
rrn4.5 · PP272182.1 · 105,704–105,806 bp · +
rrn5 · PP272182.1 · 106,067–106,187 bp · +
trnR-ACG · PP272182.1 · 106,426–106,504 bp · +
ycf1 · PP272182.1 · 107,431–108,561 bp · +
rpl32 · PP272182.1 · 111,165–111,335 bp · +
trnL-UAG · PP272182.1 · 112,064–112,143 bp · +
ccsA · PP272182.1 · 112,247–113,224 bp · +
trnN-GUU · PP272182.1 · 127,573–127,644 bp · +
rps7 · PP272182.1 · 138,584–139,051 bp · +
ndhB · PP272182.1 · 139,317–141,524 bp · +
trnL-CAA · PP272182.1 · 142,085–142,165 bp · +
trnI-CAU · PP272182.1 · 149,634–149,707 bp · +
rpl23 · PP272182.1 · 149,873–150,154 bp · +
rpl2 · PP272182.1 · 150,173–151,660 bp · +
rps19 · PP272182.1 · 151,721–151,763 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Thymus praecox subsp. praecox
ANNOTATED PLASTOME
PP272182.1
151,763 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37941 75882 113822 151763 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 407 1465 1059 Locate
trnK-UUU gene − 1686 4226 2541 Locate
matK gene − 1966 3489 1524 Locate
rps16 gene − 4773 5917 1145 Locate
trnQ-UUG gene − 6833 6904 72 Locate
psbK gene + 7285 7470 186 Locate
psbI gene + 7859 7969 111 Locate
trnS-GCU gene − 8121 8208 88 Locate
trnG-UCC gene + 8925 9676 752 Locate
trnR-UCU gene + 9857 9928 72 Locate
atpA gene − 10035 11558 1524 Locate
atpF gene − 11653 12900 1248 Locate
atpH gene − 13167 13412 246 Locate
atpI gene − 14450 15193 744 Locate
rps2 gene − 15416 16126 711 Locate
rpoC2 gene − 16335 20528 4194 Locate
rpoC1 gene − 20678 23482 2805 Locate
rpoB gene − 23509 26721 3213 Locate
trnC-GCA gene + 27851 27921 71 Locate
petN gene + 28082 28171 90 Locate
psbM gene − 29148 29252 105 Locate
trnD-GUC gene − 29770 29843 74 Locate
trnY-GUA gene − 29954 30037 84 Locate
trnE-UUC gene − 30117 30189 73 Locate
trnT-GGU gene + 30752 30823 72 Locate
psbD gene + 32164 33225 1062 Locate
psbC gene + 33173 34594 1422 Locate
trnS-UGA gene − 34842 34934 93 Locate
psbZ gene + 35280 35468 189 Locate
trnG-GCC gene + 35740 35810 71 Locate
trnfM-CAU gene − 35973 36046 74 Locate
rps14 gene − 36191 36493 303 Locate
psaB gene − 36617 38821 2205 Locate
psaA gene − 38847 41099 2253 Locate
ycf3 gene − 41870 43798 1929 Locate
trnS-GGA gene + 44641 44727 87 Locate
rps4 gene − 45015 45620 606 Locate
trnT-UGU gene − 46015 46087 73 Locate
trnL-UAA gene + 46770 47323 554 Locate
trnF-GAA gene + 47616 47688 73 Locate
ndhJ gene − 48321 48797 477 Locate
ndhK gene − 48908 49585 678 Locate
ndhC gene − 49637 49999 363 Locate
trnV-UAC gene − 50968 51610 643 Locate
trnM-CAU gene + 51791 51863 73 Locate
atpE gene − 52059 52460 402 Locate
atpB gene − 52457 53947 1491 Locate
rbcL gene + 54751 56184 1434 Locate
accD gene + 56856 58337 1482 Locate
psaI gene + 58801 58911 111 Locate
ycf4 gene + 59362 59916 555 Locate
cemA gene + 60564 61253 690 Locate
petA gene + 61467 62429 963 Locate
psbJ gene − 63424 63546 123 Locate
psbL gene − 63681 63797 117 Locate
psbF gene − 63821 63940 120 Locate
psbE gene − 63955 64206 252 Locate
petL gene + 65078 65173 96 Locate
petG gene + 65343 65456 114 Locate
trnW-CCA gene − 65577 65650 74 Locate
trnP-UGG gene − 65824 65897 74 Locate
psaJ gene + 66177 66311 135 Locate
rpl33 gene + 66759 66962 204 Locate
rps18 gene + 67133 67438 306 Locate
rpl20 gene − 67672 68058 387 Locate
rps12 gene − 68862 68975 114 Locate
clpP gene − 69100 71007 1908 Locate
psbB gene + 71459 72985 1527 Locate
psbT gene + 73161 73262 102 Locate
psbN gene − 73331 73462 132 Locate
psbH gene + 73568 73789 222 Locate
petB gene + 73915 75298 1384 Locate
petD gene + 75486 76666 1181 Locate
rpoA gene − 76849 77856 1008 Locate
rps11 gene − 77928 78344 417 Locate
rpl36 gene − 78454 78567 114 Locate
infA gene − 78631 78864 234 Locate
rps8 gene − 78989 79393 405 Locate
rpl14 gene − 79565 79933 369 Locate
rpl16 gene − 80065 81339 1275 Locate
rps3 gene − 81491 82153 663 Locate
rpl22 gene − 82138 82605 468 Locate
rps19 gene − 82675 82953 279 Locate
rpl2 gene − 83014 84501 1488 Locate
rpl23 gene − 84520 84801 282 Locate
trnI-CAU gene − 84967 85040 74 Locate
ycf2 gene + 85129 91914 6786 Locate
ycf15 gene + 92056 92253 198 Locate
trnL-CAA gene − 92509 92589 81 Locate
ndhB gene − 93150 95357 2208 Locate
rps7 gene − 95623 96090 468 Locate
rps12 gene − 96144 96937 794 Locate
trnV-GAC gene + 98574 98645 72 Locate
rrn16 gene + 98872 100362 1491 Locate
trnI-GAU gene + 100661 101682 1022 Locate
trnA-UGC gene + 101752 102629 878 Locate
rrn23 gene + 102795 105605 2811 Locate
rrn4.5 gene + 105704 105806 103 Locate
rrn5 gene + 106067 106187 121 Locate
trnR-ACG gene + 106426 106504 79 Locate
trnN-GUU gene − 107030 107101 72 Locate
ycf1 gene + 107431 108561 1131 Locate
ndhF gene − 108455 110686 2232 Locate
rpl32 gene + 111165 111335 171 Locate
trnL-UAG gene + 112064 112143 80 Locate
ccsA gene + 112247 113224 978 Locate
ndhD gene − 113473 114861 1389 Locate
psaC gene − 115097 115342 246 Locate
ndhE gene − 115577 115882 306 Locate
ndhG gene − 116106 116636 531 Locate
ndhI gene − 117021 117527 507 Locate
ndhA gene − 117611 119700 2090 Locate
ndhH gene − 119702 120883 1182 Locate
rps15 gene − 120983 121255 273 Locate
ycf1 gene − 121700 127243 5544 Locate
trnN-GUU gene + 127573 127644 72 Locate
trnR-ACG gene − 128170 128248 79 Locate
rrn5 gene − 128487 128607 121 Locate
rrn4.5 gene − 128868 128970 103 Locate
rrn23 gene − 129069 131879 2811 Locate
trnA-UGC gene − 132045 132922 878 Locate
trnI-GAU gene − 132992 134013 1022 Locate
rrn16 gene − 134312 135802 1491 Locate
trnV-GAC gene − 136029 136100 72 Locate
rps12 gene + 137737 138530 794 Locate
rps7 gene + 138584 139051 468 Locate
ndhB gene + 139317 141524 2208 Locate
trnL-CAA gene + 142085 142165 81 Locate
ycf15 gene − 142421 142618 198 Locate
ycf2 gene − 142760 149545 6786 Locate
trnI-CAU gene + 149634 149707 74 Locate
rpl23 gene + 149873 150154 282 Locate
rpl2 gene + 150173 151660 1488 Locate
rps19 gene + 151721 151763 43 Locate
Status Available
Accession PP272182.1
Length 151,763 bp
GC content 37.9%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources