Thymus quinquecostatus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_069224.1 · 10–83 bp · −
psbA · NC_069224.1 · 406–1,464 bp · −
trnK-UUU · NC_069224.1 · 1,685–4,225 bp · −
matK · NC_069224.1 · 1,965–3,488 bp · −
rps16 · NC_069224.1 · 4,772–5,916 bp · −
trnQ-UUG · NC_069224.1 · 6,834–6,905 bp · −
trnS-GCU · NC_069224.1 · 8,115–8,202 bp · −
atpA · NC_069224.1 · 10,037–11,560 bp · −
atpF · NC_069224.1 · 11,655–12,903 bp · −
atpH · NC_069224.1 · 13,170–13,415 bp · −
atpI · NC_069224.1 · 14,452–15,195 bp · −
rps2 · NC_069224.1 · 15,418–16,128 bp · −
rpoC2 · NC_069224.1 · 16,337–20,530 bp · −
rpoC1 · NC_069224.1 · 20,565–23,486 bp · −
rpoB · NC_069224.1 · 23,513–26,725 bp · −
psbM · NC_069224.1 · 29,152–29,256 bp · −
trnD-GUC · NC_069224.1 · 29,774–29,847 bp · −
trnY-GUA · NC_069224.1 · 29,958–30,041 bp · −
trnE-UUC · NC_069224.1 · 30,121–30,193 bp · −
trnS-UGA · NC_069224.1 · 34,855–34,947 bp · −
trnfM-CAU · NC_069224.1 · 35,986–36,059 bp · −
rps14 · NC_069224.1 · 36,204–36,506 bp · −
psaB · NC_069224.1 · 36,630–38,834 bp · −
psaA · NC_069224.1 · 38,860–41,112 bp · −
ycf3 · NC_069224.1 · 41,880–43,808 bp · −
rps4 · NC_069224.1 · 45,025–45,630 bp · −
trnT-UGU · NC_069224.1 · 46,024–46,096 bp · −
ndhJ · NC_069224.1 · 48,331–48,807 bp · −
ndhK · NC_069224.1 · 48,918–49,595 bp · −
ndhC · NC_069224.1 · 49,647–50,009 bp · −
trnV-UAC · NC_069224.1 · 50,978–51,620 bp · −
atpE · NC_069224.1 · 52,069–52,470 bp · −
atpB · NC_069224.1 · 52,467–53,957 bp · −
psbJ · NC_069224.1 · 63,442–63,564 bp · −
psbL · NC_069224.1 · 63,699–63,815 bp · −
psbF · NC_069224.1 · 63,839–63,958 bp · −
psbE · NC_069224.1 · 63,973–64,224 bp · −
trnW-CCA · NC_069224.1 · 65,595–65,668 bp · −
trnP-UGG · NC_069224.1 · 65,842–65,915 bp · −
rpl20 · NC_069224.1 · 67,690–68,076 bp · −
rps12 · NC_069224.1 · 68,880–68,993 bp · −
rps12 · NC_069224.1 · 96,174–96,967 bp · −
clpP · NC_069224.1 · 69,118–71,024 bp · −
psbN · NC_069224.1 · 73,348–73,479 bp · −
rpoA · NC_069224.1 · 76,865–77,872 bp · −
rps11 · NC_069224.1 · 77,944–78,360 bp · −
rpl36 · NC_069224.1 · 78,470–78,583 bp · −
infA · NC_069224.1 · 78,647–78,880 bp · −
rps8 · NC_069224.1 · 79,006–79,410 bp · −
rpl14 · NC_069224.1 · 79,583–79,951 bp · −
rpl16 · NC_069224.1 · 80,083–81,357 bp · −
rps3 · NC_069224.1 · 81,502–82,164 bp · −
rpl22 · NC_069224.1 · 82,149–82,616 bp · −
rps19 · NC_069224.1 · 82,686–82,964 bp · −
rpl2 · NC_069224.1 · 83,026–84,513 bp · −
rpl23 · NC_069224.1 · 84,532–84,813 bp · −
trnI-CAU · NC_069224.1 · 84,979–85,052 bp · −
trnL-CAA · NC_069224.1 · 92,539–92,619 bp · −
ndhB · NC_069224.1 · 93,180–95,387 bp · −
rps7 · NC_069224.1 · 95,653–96,120 bp · −
trnN-GUU · NC_069224.1 · 107,060–107,131 bp · −
ndhF · NC_069224.1 · 108,485–110,716 bp · −
ndhD · NC_069224.1 · 113,500–115,002 bp · −
psaC · NC_069224.1 · 115,123–115,368 bp · −
ndhE · NC_069224.1 · 115,603–115,908 bp · −
ndhG · NC_069224.1 · 116,132–116,662 bp · −
ndhI · NC_069224.1 · 117,047–117,553 bp · −
ndhA · NC_069224.1 · 117,637–119,726 bp · −
ndhH · NC_069224.1 · 119,728–120,909 bp · −
rps15 · NC_069224.1 · 121,009–121,281 bp · −
ycf1 · NC_069224.1 · 121,720–127,263 bp · −
trnR-ACG · NC_069224.1 · 128,190–128,263 bp · −
rrn5 · NC_069224.1 · 128,507–128,627 bp · −
rrn4.5 · NC_069224.1 · 128,888–128,990 bp · −
rrn23 · NC_069224.1 · 129,089–131,899 bp · −
trnA-UGC · NC_069224.1 · 132,065–132,942 bp · −
trnI-GAU · NC_069224.1 · 133,012–134,033 bp · −
rrn16 · NC_069224.1 · 134,332–135,822 bp · −
trnV-GAC · NC_069224.1 · 136,049–136,120 bp · −
ycf15 · NC_069224.1 · 142,441–142,689 bp · −
ycf2 · NC_069224.1 · 142,780–149,583 bp · −
psbK · NC_069224.1 · 7,286–7,471 bp · +
psbI · NC_069224.1 · 7,854–7,964 bp · +
trnR-UCU · NC_069224.1 · 9,859–9,930 bp · +
trnC-GCA · NC_069224.1 · 27,855–27,925 bp · +
petN · NC_069224.1 · 28,086–28,175 bp · +
trnT-GGU · NC_069224.1 · 30,758–30,829 bp · +
psbD · NC_069224.1 · 32,177–33,238 bp · +
psbC · NC_069224.1 · 33,186–34,607 bp · +
psbZ · NC_069224.1 · 35,293–35,481 bp · +
trnG-GCC · NC_069224.1 · 35,753–35,823 bp · +
trnS-GGA · NC_069224.1 · 44,651–44,737 bp · +
trnL-UAA · NC_069224.1 · 46,781–47,334 bp · +
trnF-GAA · NC_069224.1 · 47,627–47,699 bp · +
trnM-CAU · NC_069224.1 · 51,801–51,873 bp · +
rbcL · NC_069224.1 · 54,761–56,194 bp · +
accD · NC_069224.1 · 56,879–58,360 bp · +
psaI · NC_069224.1 · 58,824–58,934 bp · +
ycf4 · NC_069224.1 · 59,382–59,936 bp · +
cemA · NC_069224.1 · 60,583–61,272 bp · +
petA · NC_069224.1 · 61,486–62,448 bp · +
petL · NC_069224.1 · 65,096–65,191 bp · +
petG · NC_069224.1 · 65,361–65,474 bp · +
psaJ · NC_069224.1 · 66,195–66,329 bp · +
rpl33 · NC_069224.1 · 66,777–66,980 bp · +
rps18 · NC_069224.1 · 67,151–67,456 bp · +
rps12 · NC_069224.1 · 137,757–138,550 bp · +
psbB · NC_069224.1 · 71,476–73,002 bp · +
psbT · NC_069224.1 · 73,178–73,279 bp · +
psbH · NC_069224.1 · 73,585–73,806 bp · +
petB · NC_069224.1 · 73,932–75,314 bp · +
petD · NC_069224.1 · 75,502–76,682 bp · +
ycf2 · NC_069224.1 · 85,141–91,944 bp · +
ycf15 · NC_069224.1 · 92,035–92,283 bp · +
trnV-GAC · NC_069224.1 · 98,604–98,675 bp · +
rrn16 · NC_069224.1 · 98,902–100,392 bp · +
trnI-GAU · NC_069224.1 · 100,691–101,712 bp · +
trnA-UGC · NC_069224.1 · 101,782–102,659 bp · +
rrn23 · NC_069224.1 · 102,825–105,635 bp · +
rrn4.5 · NC_069224.1 · 105,734–105,836 bp · +
rrn5 · NC_069224.1 · 106,097–106,217 bp · +
trnR-ACG · NC_069224.1 · 106,461–106,534 bp · +
ycf1 · NC_069224.1 · 107,461–108,591 bp · +
rpl32 · NC_069224.1 · 111,195–111,365 bp · +
trnL-UAG · NC_069224.1 · 112,093–112,172 bp · +
ccsA · NC_069224.1 · 112,276–113,253 bp · +
trnN-GUU · NC_069224.1 · 127,593–127,664 bp · +
rps7 · NC_069224.1 · 138,604–139,071 bp · +
ndhB · NC_069224.1 · 139,337–141,544 bp · +
trnL-CAA · NC_069224.1 · 142,105–142,185 bp · +
trnI-CAU · NC_069224.1 · 149,672–149,745 bp · +
rpl23 · NC_069224.1 · 149,911–150,192 bp · +
rpl2 · NC_069224.1 · 150,211–151,698 bp · +
rps19 · NC_069224.1 · 151,760–151,802 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Thymus quinquecostatus
ANNOTATED PLASTOME
NC_069224.1
151,802 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37950 75901 113852 151802 bp
Forward strand 5′ → 3′
psbK psbI trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 10 83 74 Locate
psbA gene − 406 1464 1059 Locate
trnK-UUU gene − 1685 4225 2541 Locate
matK gene − 1965 3488 1524 Locate
rps16 gene − 4772 5916 1145 Locate
trnQ-UUG gene − 6834 6905 72 Locate
psbK gene + 7286 7471 186 Locate
psbI gene + 7854 7964 111 Locate
trnS-GCU gene − 8115 8202 88 Locate
trnR-UCU gene + 9859 9930 72 Locate
atpA gene − 10037 11560 1524 Locate
atpF gene − 11655 12903 1249 Locate
atpH gene − 13170 13415 246 Locate
atpI gene − 14452 15195 744 Locate
rps2 gene − 15418 16128 711 Locate
rpoC2 gene − 16337 20530 4194 Locate
rpoC1 gene − 20565 23486 2922 Locate
rpoB gene − 23513 26725 3213 Locate
trnC-GCA gene + 27855 27925 71 Locate
petN gene + 28086 28175 90 Locate
psbM gene − 29152 29256 105 Locate
trnD-GUC gene − 29774 29847 74 Locate
trnY-GUA gene − 29958 30041 84 Locate
trnE-UUC gene − 30121 30193 73 Locate
trnT-GGU gene + 30758 30829 72 Locate
psbD gene + 32177 33238 1062 Locate
psbC gene + 33186 34607 1422 Locate
trnS-UGA gene − 34855 34947 93 Locate
psbZ gene + 35293 35481 189 Locate
trnG-GCC gene + 35753 35823 71 Locate
trnfM-CAU gene − 35986 36059 74 Locate
rps14 gene − 36204 36506 303 Locate
psaB gene − 36630 38834 2205 Locate
psaA gene − 38860 41112 2253 Locate
ycf3 gene − 41880 43808 1929 Locate
trnS-GGA gene + 44651 44737 87 Locate
rps4 gene − 45025 45630 606 Locate
trnT-UGU gene − 46024 46096 73 Locate
trnL-UAA gene + 46781 47334 554 Locate
trnF-GAA gene + 47627 47699 73 Locate
ndhJ gene − 48331 48807 477 Locate
ndhK gene − 48918 49595 678 Locate
ndhC gene − 49647 50009 363 Locate
trnV-UAC gene − 50978 51620 643 Locate
trnM-CAU gene + 51801 51873 73 Locate
atpE gene − 52069 52470 402 Locate
atpB gene − 52467 53957 1491 Locate
rbcL gene + 54761 56194 1434 Locate
accD gene + 56879 58360 1482 Locate
psaI gene + 58824 58934 111 Locate
ycf4 gene + 59382 59936 555 Locate
cemA gene + 60583 61272 690 Locate
petA gene + 61486 62448 963 Locate
psbJ gene − 63442 63564 123 Locate
psbL gene − 63699 63815 117 Locate
psbF gene − 63839 63958 120 Locate
psbE gene − 63973 64224 252 Locate
petL gene + 65096 65191 96 Locate
petG gene + 65361 65474 114 Locate
trnW-CCA gene − 65595 65668 74 Locate
trnP-UGG gene − 65842 65915 74 Locate
psaJ gene + 66195 66329 135 Locate
rpl33 gene + 66777 66980 204 Locate
rps18 gene + 67151 67456 306 Locate
rpl20 gene − 67690 68076 387 Locate
rps12 gene − 68880 68993 114 Locate
clpP gene − 69118 71024 1907 Locate
psbB gene + 71476 73002 1527 Locate
psbT gene + 73178 73279 102 Locate
psbN gene − 73348 73479 132 Locate
psbH gene + 73585 73806 222 Locate
petB gene + 73932 75314 1383 Locate
petD gene + 75502 76682 1181 Locate
rpoA gene − 76865 77872 1008 Locate
rps11 gene − 77944 78360 417 Locate
rpl36 gene − 78470 78583 114 Locate
infA gene − 78647 78880 234 Locate
rps8 gene − 79006 79410 405 Locate
rpl14 gene − 79583 79951 369 Locate
rpl16 gene − 80083 81357 1275 Locate
rps3 gene − 81502 82164 663 Locate
rpl22 gene − 82149 82616 468 Locate
rps19 gene − 82686 82964 279 Locate
rpl2 gene − 83026 84513 1488 Locate
rpl23 gene − 84532 84813 282 Locate
trnI-CAU gene − 84979 85052 74 Locate
ycf2 gene + 85141 91944 6804 Locate
ycf15 gene + 92035 92283 249 Locate
trnL-CAA gene − 92539 92619 81 Locate
ndhB gene − 93180 95387 2208 Locate
rps7 gene − 95653 96120 468 Locate
rps12 gene − 96174 96967 794 Locate
trnV-GAC gene + 98604 98675 72 Locate
rrn16 gene + 98902 100392 1491 Locate
trnI-GAU gene + 100691 101712 1022 Locate
trnA-UGC gene + 101782 102659 878 Locate
rrn23 gene + 102825 105635 2811 Locate
rrn4.5 gene + 105734 105836 103 Locate
rrn5 gene + 106097 106217 121 Locate
trnR-ACG gene + 106461 106534 74 Locate
trnN-GUU gene − 107060 107131 72 Locate
ycf1 gene + 107461 108591 1131 Locate
ndhF gene − 108485 110716 2232 Locate
rpl32 gene + 111195 111365 171 Locate
trnL-UAG gene + 112093 112172 80 Locate
ccsA gene + 112276 113253 978 Locate
ndhD gene − 113500 115002 1503 Locate
psaC gene − 115123 115368 246 Locate
ndhE gene − 115603 115908 306 Locate
ndhG gene − 116132 116662 531 Locate
ndhI gene − 117047 117553 507 Locate
ndhA gene − 117637 119726 2090 Locate
ndhH gene − 119728 120909 1182 Locate
rps15 gene − 121009 121281 273 Locate
ycf1 gene − 121720 127263 5544 Locate
trnN-GUU gene + 127593 127664 72 Locate
trnR-ACG gene − 128190 128263 74 Locate
rrn5 gene − 128507 128627 121 Locate
rrn4.5 gene − 128888 128990 103 Locate
rrn23 gene − 129089 131899 2811 Locate
trnA-UGC gene − 132065 132942 878 Locate
trnI-GAU gene − 133012 134033 1022 Locate
rrn16 gene − 134332 135822 1491 Locate
trnV-GAC gene − 136049 136120 72 Locate
rps12 gene + 137757 138550 794 Locate
rps7 gene + 138604 139071 468 Locate
ndhB gene + 139337 141544 2208 Locate
trnL-CAA gene + 142105 142185 81 Locate
ycf15 gene − 142441 142689 249 Locate
ycf2 gene − 142780 149583 6804 Locate
trnI-CAU gene + 149672 149745 74 Locate
rpl23 gene + 149911 150192 282 Locate
rpl2 gene + 150211 151698 1488 Locate
rps19 gene + 151760 151802 43 Locate
Status Available
Accession NC_069224.1
Length 151,802 bp
GC content 37.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources