Tinnea aethiopica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420971.1 · 2–75 bp · −
psbA · MW420971.1 · 383–1,441 bp · −
trnK-UUU · MW420971.1 · 1,671–4,247 bp · −
matK · MW420971.1 · 1,961–3,505 bp · −
rps16 · MW420971.1 · 5,142–6,296 bp · −
trnQ-UUC · MW420971.1 · 7,413–7,484 bp · −
trnS-GCU · MW420971.1 · 8,618–8,705 bp · −
atpA · MW420971.1 · 10,482–12,005 bp · −
atpF · MW420971.1 · 12,074–13,313 bp · −
atpH · MW420971.1 · 13,675–13,920 bp · −
atpI · MW420971.1 · 14,802–15,542 bp · −
rps2 · MW420971.1 · 15,890–16,600 bp · −
rpoC2 · MW420971.1 · 16,863–21,002 bp · −
rpoC1 · MW420971.1 · 21,157–23,976 bp · −
rpoB · MW420971.1 · 24,003–27,215 bp · −
psbM · MW420971.1 · 30,267–30,380 bp · −
trnD-GUC · MW420971.1 · 30,906–30,979 bp · −
trnY-GUA · MW420971.1 · 31,093–31,176 bp · −
trnE-UUC · MW420971.1 · 31,236–31,308 bp · −
trnS-UCA · MW420971.1 · 35,946–36,038 bp · −
trnfM-CAU · MW420971.1 · 37,042–37,115 bp · −
rps14 · MW420971.1 · 37,265–37,567 bp · −
psaB · MW420971.1 · 37,695–39,899 bp · −
psaA · MW420971.1 · 39,925–42,177 bp · −
ycf3 · MW420971.1 · 42,881–44,807 bp · −
rps4 · MW420971.1 · 46,056–46,661 bp · −
trnT-UGU · MW420971.1 · 46,973–47,045 bp · −
ndhJ · MW420971.1 · 49,334–49,810 bp · −
ndhK · MW420971.1 · 49,910–50,587 bp · −
ndhC · MW420971.1 · 50,640–51,002 bp · −
trnV-UAC · MW420971.1 · 52,026–52,677 bp · −
atpE · MW420971.1 · 53,155–53,556 bp · −
atpB · MW420971.1 · 53,553–55,049 bp · −
pabJ · MW420971.1 · 64,839–64,961 bp · −
psbL · MW420971.1 · 65,095–65,211 bp · −
psbF · MW420971.1 · 65,235–65,354 bp · −
psbE · MW420971.1 · 65,369–65,620 bp · −
trnW-CCA · MW420971.1 · 67,053–67,126 bp · −
trnP-UGG · MW420971.1 · 67,296–67,360 bp · −
rpl20 · MW420971.1 · 69,143–69,529 bp · −
rps12 · MW420971.1 · 70,333–70,458 bp · −
rps12 · MW420971.1 · 97,986–98,776 bp · −
clpP · MW420971.1 · 70,600–72,559 bp · −
psbN · MW420971.1 · 74,896–75,027 bp · −
rpoA · MW420971.1 · 78,383–79,396 bp · −
rps11 · MW420971.1 · 79,468–79,884 bp · −
rpl36 · MW420971.1 · 79,986–80,099 bp · −
infA · MW420971.1 · 80,195–80,428 bp · −
rps8 · MW420971.1 · 80,554–80,964 bp · −
rpl14 · MW420971.1 · 81,135–81,503 bp · −
rpl16 · MW420971.1 · 81,630–83,152 bp · −
rps3 · MW420971.1 · 83,307–83,969 bp · −
rpl22 · MW420971.1 · 83,954–84,409 bp · −
rps19 · MW420971.1 · 84,469–84,747 bp · −
rpl2 · MW420971.1 · 84,802–86,293 bp · −
rpl23 · MW420971.1 · 86,312–86,593 bp · −
trnI-CAU · MW420971.1 · 86,753–86,826 bp · −
trnL-CAA · MW420971.1 · 94,357–94,437 bp · −
ndhB · MW420971.1 · 94,980–97,190 bp · −
rps7 · MW420971.1 · 97,465–97,932 bp · −
ndhF · MW420971.1 · 110,005–112,227 bp · −
ndhD · MW420971.1 · 114,886–116,415 bp · −
psaC · MW420971.1 · 116,510–116,755 bp · −
ndhE · MW420971.1 · 116,983–117,288 bp · −
ndhG · MW420971.1 · 117,502–118,032 bp · −
ndhI · MW420971.1 · 118,385–118,885 bp · −
ndhA · MW420971.1 · 118,966–121,083 bp · −
ndhH · MW420971.1 · 121,085–122,266 bp · −
rps15 · MW420971.1 · 122,363–122,635 bp · −
ycf1 · MW420971.1 · 123,096–128,660 bp · −
trnR-ACG · MW420971.1 · 129,626–129,699 bp · −
rrn5 · MW420971.1 · 129,934–130,054 bp · −
rrn4.5 · MW420971.1 · 130,309–130,411 bp · −
rrn23 · MW420971.1 · 130,510–133,321 bp · −
trnA-UGC · MW420971.1 · 133,490–134,371 bp · −
trnI-GAU · MW420971.1 · 134,437–135,455 bp · −
rrn16 · MW420971.1 · 135,754–137,244 bp · −
trnV-GAC · MW420971.1 · 137,472–137,543 bp · −
ycf15 · MW420971.1 · 143,795–143,992 bp · −
ycf2 · MW420971.1 · 144,134–150,976 bp · −
psbK · MW420971.1 · 7,814–7,999 bp · +
psbI · MW420971.1 · 8,384–8,494 bp · +
trnG-CGA · MW420971.1 · 9,383–10,138 bp · +
trnR-UCU · MW420971.1 · 10,314–10,385 bp · +
trnC-GCA · MW420971.1 · 28,381–28,451 bp · +
petN · MW420971.1 · 29,174–29,263 bp · +
trnT-GGU · MW420971.1 · 31,890–31,961 bp · +
psbD · MW420971.1 · 33,265–34,326 bp · +
psbC · MW420971.1 · 34,274–35,695 bp · +
psbZ · MW420971.1 · 36,358–36,546 bp · +
trnG-GCC · MW420971.1 · 36,830–36,900 bp · +
trnS-GGA · MW420971.1 · 45,690–45,776 bp · +
trnL-UAA · MW420971.1 · 47,745–48,310 bp · +
trnF-GAA · MW420971.1 · 48,615–48,687 bp · +
trnM-CAU · MW420971.1 · 52,858–52,930 bp · +
rbcL · MW420971.1 · 55,835–57,274 bp · +
accD · MW420971.1 · 57,982–59,460 bp · +
psaI · MW420971.1 · 60,166–60,276 bp · +
ycf4 · MW420971.1 · 60,727–61,281 bp · +
cemA · MW420971.1 · 61,962–62,621 bp · +
petA · MW420971.1 · 62,844–63,806 bp · +
petL · MW420971.1 · 66,544–66,639 bp · +
petG · MW420971.1 · 66,814–66,927 bp · +
psbJ · MW420971.1 · 67,640–67,774 bp · +
rpl33 · MW420971.1 · 68,247–68,447 bp · +
rps18 · MW420971.1 · 68,622–68,927 bp · +
rps12 · MW420971.1 · 139,115–139,905 bp · +
psbB · MW420971.1 · 73,016–74,542 bp · +
psbT · MW420971.1 · 74,728–74,835 bp · +
psbH · MW420971.1 · 75,131–75,352 bp · +
petB · MW420971.1 · 75,477–76,838 bp · +
petD · MW420971.1 · 77,027–78,220 bp · +
ycf2 · MW420971.1 · 86,915–93,757 bp · +
ycf15 · MW420971.1 · 93,899–94,096 bp · +
trnV-GAC · MW420971.1 · 100,348–100,419 bp · +
rrn16 · MW420971.1 · 100,647–102,137 bp · +
trnI-GAU · MW420971.1 · 102,436–103,454 bp · +
trnA-UGC · MW420971.1 · 103,520–104,401 bp · +
rrn23 · MW420971.1 · 104,570–107,381 bp · +
rrn4.5 · MW420971.1 · 107,480–107,582 bp · +
rrn5 · MW420971.1 · 107,837–107,957 bp · +
trnR-ACG · MW420971.1 · 108,192–108,265 bp · +
trnN-GUU · MW420971.1 · 108,830–108,901 bp · +
rpl32 · MW420971.1 · 112,693–112,785 bp · +
trnL-UAG · MW420971.1 · 113,506–113,585 bp · +
ccsA · MW420971.1 · 113,672–114,646 bp · +
trnN-GUU · MW420971.1 · 128,990–129,061 bp · +
rps7 · MW420971.1 · 139,959–140,426 bp · +
ndhB · MW420971.1 · 140,701–142,911 bp · +
trnL-CAA · MW420971.1 · 143,454–143,534 bp · +
trnI-CAU · MW420971.1 · 151,065–151,138 bp · +
rpl23 · MW420971.1 · 151,298–151,579 bp · +
rpl2 · MW420971.1 · 151,598–153,089 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Tinnea aethiopica
ANNOTATED PLASTOME
MW420971.1
153,186 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38296 76593 114890 153186 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 383 1441 1059 Locate
trnK-UUU gene − 1671 4247 2577 Locate
matK gene − 1961 3505 1545 Locate
rps16 gene − 5142 6296 1155 Locate
trnQ-UUC gene − 7413 7484 72 Locate
psbK gene + 7814 7999 186 Locate
psbI gene + 8384 8494 111 Locate
trnS-GCU gene − 8618 8705 88 Locate
trnG-CGA gene + 9383 10138 756 Locate
trnR-UCU gene + 10314 10385 72 Locate
atpA gene − 10482 12005 1524 Locate
atpF gene − 12074 13313 1240 Locate
atpH gene − 13675 13920 246 Locate
atpI gene − 14802 15542 741 Locate
rps2 gene − 15890 16600 711 Locate
rpoC2 gene − 16863 21002 4140 Locate
rpoC1 gene − 21157 23976 2820 Locate
rpoB gene − 24003 27215 3213 Locate
trnC-GCA gene + 28381 28451 71 Locate
petN gene + 29174 29263 90 Locate
psbM gene − 30267 30380 114 Locate
trnD-GUC gene − 30906 30979 74 Locate
trnY-GUA gene − 31093 31176 84 Locate
trnE-UUC gene − 31236 31308 73 Locate
trnT-GGU gene + 31890 31961 72 Locate
psbD gene + 33265 34326 1062 Locate
psbC gene + 34274 35695 1422 Locate
trnS-UCA gene − 35946 36038 93 Locate
psbZ gene + 36358 36546 189 Locate
trnG-GCC gene + 36830 36900 71 Locate
trnfM-CAU gene − 37042 37115 74 Locate
rps14 gene − 37265 37567 303 Locate
psaB gene − 37695 39899 2205 Locate
psaA gene − 39925 42177 2253 Locate
ycf3 gene − 42881 44807 1927 Locate
trnS-GGA gene + 45690 45776 87 Locate
rps4 gene − 46056 46661 606 Locate
trnT-UGU gene − 46973 47045 73 Locate
trnL-UAA gene + 47745 48310 566 Locate
trnF-GAA gene + 48615 48687 73 Locate
ndhJ gene − 49334 49810 477 Locate
ndhK gene − 49910 50587 678 Locate
ndhC gene − 50640 51002 363 Locate
trnV-UAC gene − 52026 52677 652 Locate
trnM-CAU gene + 52858 52930 73 Locate
atpE gene − 53155 53556 402 Locate
atpB gene − 53553 55049 1497 Locate
rbcL gene + 55835 57274 1440 Locate
accD gene + 57982 59460 1479 Locate
psaI gene + 60166 60276 111 Locate
ycf4 gene + 60727 61281 555 Locate
cemA gene + 61962 62621 660 Locate
petA gene + 62844 63806 963 Locate
pabJ gene − 64839 64961 123 Locate
psbL gene − 65095 65211 117 Locate
psbF gene − 65235 65354 120 Locate
psbE gene − 65369 65620 252 Locate
petL gene + 66544 66639 96 Locate
petG gene + 66814 66927 114 Locate
trnW-CCA gene − 67053 67126 74 Locate
trnP-UGG gene − 67296 67360 65 Locate
psbJ gene + 67640 67774 135 Locate
rpl33 gene + 68247 68447 201 Locate
rps18 gene + 68622 68927 306 Locate
rpl20 gene − 69143 69529 387 Locate
rps12 gene − 70333 70458 126 Locate
clpP gene − 70600 72559 1960 Locate
psbB gene + 73016 74542 1527 Locate
psbT gene + 74728 74835 108 Locate
psbN gene − 74896 75027 132 Locate
psbH gene + 75131 75352 222 Locate
petB gene + 75477 76838 1362 Locate
petD gene + 77027 78220 1194 Locate
rpoA gene − 78383 79396 1014 Locate
rps11 gene − 79468 79884 417 Locate
rpl36 gene − 79986 80099 114 Locate
infA gene − 80195 80428 234 Locate
rps8 gene − 80554 80964 411 Locate
rpl14 gene − 81135 81503 369 Locate
rpl16 gene − 81630 83152 1523 Locate
rps3 gene − 83307 83969 663 Locate
rpl22 gene − 83954 84409 456 Locate
rps19 gene − 84469 84747 279 Locate
rpl2 gene − 84802 86293 1492 Locate
rpl23 gene − 86312 86593 282 Locate
trnI-CAU gene − 86753 86826 74 Locate
ycf2 gene + 86915 93757 6843 Locate
ycf15 gene + 93899 94096 198 Locate
trnL-CAA gene − 94357 94437 81 Locate
ndhB gene − 94980 97190 2211 Locate
rps7 gene − 97465 97932 468 Locate
rps12 gene − 97986 98776 791 Locate
trnV-GAC gene + 100348 100419 72 Locate
rrn16 gene + 100647 102137 1491 Locate
trnI-GAU gene + 102436 103454 1019 Locate
trnA-UGC gene + 103520 104401 882 Locate
rrn23 gene + 104570 107381 2812 Locate
rrn4.5 gene + 107480 107582 103 Locate
rrn5 gene + 107837 107957 121 Locate
trnR-ACG gene + 108192 108265 74 Locate
trnN-GUU gene + 108830 108901 72 Locate
ndhF gene − 110005 112227 2223 Locate
rpl32 gene + 112693 112785 93 Locate
trnL-UAG gene + 113506 113585 80 Locate
ccsA gene + 113672 114646 975 Locate
ndhD gene − 114886 116415 1530 Locate
psaC gene − 116510 116755 246 Locate
ndhE gene − 116983 117288 306 Locate
ndhG gene − 117502 118032 531 Locate
ndhI gene − 118385 118885 501 Locate
ndhA gene − 118966 121083 2118 Locate
ndhH gene − 121085 122266 1182 Locate
rps15 gene − 122363 122635 273 Locate
ycf1 gene − 123096 128660 5565 Locate
trnN-GUU gene + 128990 129061 72 Locate
trnR-ACG gene − 129626 129699 74 Locate
rrn5 gene − 129934 130054 121 Locate
rrn4.5 gene − 130309 130411 103 Locate
rrn23 gene − 130510 133321 2812 Locate
trnA-UGC gene − 133490 134371 882 Locate
trnI-GAU gene − 134437 135455 1019 Locate
rrn16 gene − 135754 137244 1491 Locate
trnV-GAC gene − 137472 137543 72 Locate
rps12 gene + 139115 139905 791 Locate
rps7 gene + 139959 140426 468 Locate
ndhB gene + 140701 142911 2211 Locate
trnL-CAA gene + 143454 143534 81 Locate
ycf15 gene − 143795 143992 198 Locate
ycf2 gene − 144134 150976 6843 Locate
trnI-CAU gene + 151065 151138 74 Locate
rpl23 gene + 151298 151579 282 Locate
rpl2 gene + 151598 153089 1492 Locate
Status Available
Accession MW420971.1
Length 153,186 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources