Coordinate-aware organelle record

Vitex negundo chloroplast genome

Available NC_057235.1 154,438 bp 132 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

132 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	8	82	74
psbA	gene	photosystem-ii	−	430	1489	1059
trnK-UUU	gene	translation-rna	−	1721	4300	2579
matK	gene	other	−	2020	3550	1530
rps16	gene	ribosomal-protein	−	5108	6267	1159
trnQ-UUG	gene	translation-rna	−	7508	7580	72
psbK	gene	photosystem-ii	+	7913	8099	186
psbI	gene	photosystem-ii	+	8481	8592	111
trnS-GCU	gene	translation-rna	−	8720	8808	88
trnG-UCC	gene	translation-rna	+	9528	10276	748
trnR-UCU	gene	translation-rna	+	10457	10529	72
atpA	gene	atp-synthase	−	10632	12156	1524
atpF	gene	atp-synthase	−	12235	13503	1268
atpH	gene	atp-synthase	−	13902	14148	246
atpI	gene	atp-synthase	−	15182	15926	744
rps2	gene	ribosomal-protein	−	16175	16886	711
rpoC2	gene	rna-polymerase	−	17116	21286	4170
rpoC1	gene	rna-polymerase	−	21452	24293	2841
rpoB	gene	rna-polymerase	−	24319	27508	3189
trnC-GCA	gene	translation-rna	+	28704	28775	71
petN	gene	cytochrome	+	29631	29721	90
psbM	gene	photosystem-ii	−	30727	30832	105
trnD-GUC	gene	translation-rna	−	31359	31433	74
trnY-GUA	gene	translation-rna	−	31541	31625	84
trnE-UUC	gene	translation-rna	−	31684	31757	73
trnT-GGU	gene	translation-rna	+	32191	32263	72
psbD	gene	photosystem-ii	+	33633	34695	1062
psbC	gene	photosystem-ii	+	34642	36064	1422
trnS-UGA	gene	translation-rna	−	36316	36409	93
psbZ	gene	photosystem-ii	+	36742	36931	189
trnG-GCC	gene	translation-rna	+	37200	37271	71
trnfM-CAU	gene	translation-rna	−	37428	37502	74
rps14	gene	ribosomal-protein	−	37651	37954	303
psaB	gene	photosystem-i	−	38076	40281	2205
psaA	gene	photosystem-i	−	40306	42559	2253
ycf3	gene	other	−	43292	45235	1943
trnS-GGA	gene	translation-rna	+	46028	46115	87
rps4	gene	ribosomal-protein	−	46396	47002	606
trnT-UGU	gene	translation-rna	−	47370	47443	73
trnL-UAA	gene	translation-rna	+	48106	48676	570
trnF-GAA	gene	translation-rna	+	48981	49054	73
ndhJ	gene	nad-dehydrogenase	−	49721	50198	477
ndhK	gene	nad-dehydrogenase	−	50304	51045	741
ndhC	gene	nad-dehydrogenase	−	51035	51398	363
trnV-UAC	gene	translation-rna	−	52434	53095	661
trnM-CAU	gene	translation-rna	+	53271	53344	73
atpE	gene	atp-synthase	−	53570	53972	402
atpB	gene	atp-synthase	−	53968	55465	1497
rbcL	gene	other	+	56271	57714	1443
accD	gene	other	+	58406	59888	1482
psaI	gene	photosystem-i	+	60613	60724	111
ycf4	gene	other	+	61164	61719	555
cemA	gene	other	+	62381	63071	690
petA	gene	cytochrome	+	63285	64248	963
psbJ	gene	photosystem-ii	−	65289	65412	123
psbL	gene	photosystem-ii	−	65545	65662	117
psbF	gene	photosystem-ii	−	65685	65805	120
psbE	gene	photosystem-ii	−	65819	66071	252
petL	gene	cytochrome	+	67005	67101	96
petG	gene	cytochrome	+	67275	67389	114
trnW-CCA	gene	translation-rna	−	67511	67585	74
trnP-UGG	gene	translation-rna	−	67740	67814	74
psaJ	gene	photosystem-i	+	68091	68226	135
rpl33	gene	ribosomal-protein	+	68699	68900	201
rps18	gene	ribosomal-protein	+	69068	69374	306
rpl20	gene	ribosomal-protein	−	69644	70031	387
rps12	gene	ribosomal-protein	−	70863	99265	28402
rps12	gene	ribosomal-protein	+	70863	141118	70255
clpP1	gene	other	−	71109	73094	1985
psbB	gene	photosystem-ii	+	73563	75090	1527
psbT	gene	photosystem-ii	+	75287	75395	108
pbf1	gene	other	−	75462	75594	132
psbH	gene	photosystem-ii	+	75681	75921	240
petB	gene	cytochrome	+	76045	77433	1388
petD	gene	cytochrome	+	77629	78852	1223
rpoA	gene	rna-polymerase	−	79013	80033	1020
rps11	gene	ribosomal-protein	−	80104	80521	417
rpl36	gene	ribosomal-protein	−	80622	80736	114
infA	gene	other	−	80831	81065	234
rps8	gene	ribosomal-protein	−	81189	81594	405
rpl14	gene	ribosomal-protein	−	81777	82146	369
rpl16	gene	ribosomal-protein	−	82272	83611	1339
rps3	gene	ribosomal-protein	−	83744	84407	663
rpl22	gene	ribosomal-protein	−	84391	84859	468
rps19	gene	ribosomal-protein	−	84910	85189	279
rpl2	gene	ribosomal-protein	−	85250	86732	1482
rpl23	gene	ribosomal-protein	−	86750	87032	282
trnI-CAU	gene	translation-rna	−	87197	87271	74
ycf2	gene	other	+	87379	94243	6864
trnL-CAA	gene	translation-rna	−	94842	94923	81
ndhB	gene	nad-dehydrogenase	−	95470	97682	2212
rps7	gene	ribosomal-protein	−	97945	98413	468
trnV-GAC	gene	translation-rna	+	100861	100933	72
rrn16	gene	ribosomal-rna	+	101160	102651	1491
trnI-GAU	gene	translation-rna	+	102949	103968	1019
trnA-UGC	gene	translation-rna	+	104032	104910	878
rrn23	gene	ribosomal-rna	+	105078	107889	2811
rrn4.5	gene	ribosomal-rna	+	107987	108090	103
rrn5	gene	ribosomal-rna	+	108345	108466	121
trnR-ACG	gene	translation-rna	+	108709	108783	74
trnN-GUU	gene	translation-rna	−	109352	109424	72
ycf1	gene	other	+	109755	110907	1152
ndhF	gene	nad-dehydrogenase	−	110800	113047	2247
rpl32	gene	ribosomal-protein	+	113598	113775	177
trnL-UAG	gene	translation-rna	+	114584	114664	80
ccsA	gene	other	+	114754	115741	987
ndhD	gene	nad-dehydrogenase	−	116007	117510	1503
psaC	gene	photosystem-i	−	117635	117881	246
ndhE	gene	nad-dehydrogenase	−	118143	118449	306
ndhG	gene	nad-dehydrogenase	−	118662	119193	531
ndhI	gene	nad-dehydrogenase	−	119549	120056	507
ndhA	gene	nad-dehydrogenase	−	120138	122314	2176
ndhH	gene	nad-dehydrogenase	−	122315	123497	1182
rps15	gene	ribosomal-protein	−	123595	123868	273
ycf1	gene	other	−	124282	129829	5547
trnN-GUU	gene	translation-rna	+	130160	130232	72
trnR-ACG	gene	translation-rna	−	130801	130875	74
rrn5	gene	ribosomal-rna	−	131118	131239	121
rrn4.5	gene	ribosomal-rna	−	131494	131597	103
rrn23	gene	ribosomal-rna	−	131695	134506	2811
trnA-UGC	gene	translation-rna	−	134674	135552	878
trnI-GAU	gene	translation-rna	−	135616	136635	1019
rrn16	gene	ribosomal-rna	−	136933	138424	1491
trnV-GAC	gene	translation-rna	−	138651	138723	72
rps7	gene	ribosomal-protein	+	141171	141639	468
ndhB	gene	nad-dehydrogenase	+	141902	144114	2212
trnL-CAA	gene	translation-rna	+	144661	144742	81
ycf2	gene	other	−	145341	152205	6864
trnI-CAU	gene	translation-rna	+	152313	152387	74
rpl23	gene	ribosomal-protein	+	152552	152834	282
rpl2	gene	ribosomal-protein	+	152852	154334	1482
rps19	gene	ribosomal-protein	+	154395	154438	43

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomeNC_057235.1DNA · accDNC_057235DNA · atpBNC_057235DNA · matKNC_057235DNA · ndhFNC_057235DNA · psbANC_057235DNA · rbcLNC_057235DNA · rps12NC_057235DNA · ycf1NC_057235