Vitex negundo chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_057235.1 · 9–82 bp · −
psbA · NC_057235.1 · 431–1,489 bp · −
trnK-UUU · NC_057235.1 · 1,722–4,300 bp · −
matK · NC_057235.1 · 2,021–3,550 bp · −
rps16 · NC_057235.1 · 5,109–6,267 bp · −
trnQ-UUG · NC_057235.1 · 7,509–7,580 bp · −
trnS-GCU · NC_057235.1 · 8,721–8,808 bp · −
atpA · NC_057235.1 · 10,633–12,156 bp · −
atpF · NC_057235.1 · 12,236–13,503 bp · −
atpH · NC_057235.1 · 13,903–14,148 bp · −
atpI · NC_057235.1 · 15,183–15,926 bp · −
rps2 · NC_057235.1 · 16,176–16,886 bp · −
rpoC2 · NC_057235.1 · 17,117–21,286 bp · −
rpoC1 · NC_057235.1 · 21,453–24,293 bp · −
rpoB · NC_057235.1 · 24,320–27,508 bp · −
psbM · NC_057235.1 · 30,728–30,832 bp · −
trnD-GUC · NC_057235.1 · 31,360–31,433 bp · −
trnY-GUA · NC_057235.1 · 31,542–31,625 bp · −
trnE-UUC · NC_057235.1 · 31,685–31,757 bp · −
trnS-UGA · NC_057235.1 · 36,317–36,409 bp · −
trnfM-CAU · NC_057235.1 · 37,429–37,502 bp · −
rps14 · NC_057235.1 · 37,652–37,954 bp · −
psaB · NC_057235.1 · 38,077–40,281 bp · −
psaA · NC_057235.1 · 40,307–42,559 bp · −
ycf3 · NC_057235.1 · 43,293–45,235 bp · −
rps4 · NC_057235.1 · 46,397–47,002 bp · −
trnT-UGU · NC_057235.1 · 47,371–47,443 bp · −
ndhJ · NC_057235.1 · 49,722–50,198 bp · −
ndhK · NC_057235.1 · 50,305–51,045 bp · −
ndhC · NC_057235.1 · 51,036–51,398 bp · −
trnV-UAC · NC_057235.1 · 52,435–53,095 bp · −
atpE · NC_057235.1 · 53,571–53,972 bp · −
atpB · NC_057235.1 · 53,969–55,465 bp · −
psbJ · NC_057235.1 · 65,290–65,412 bp · −
psbL · NC_057235.1 · 65,546–65,662 bp · −
psbF · NC_057235.1 · 65,686–65,805 bp · −
psbE · NC_057235.1 · 65,820–66,071 bp · −
trnW-CCA · NC_057235.1 · 67,512–67,585 bp · −
trnP-UGG · NC_057235.1 · 67,741–67,814 bp · −
rpl20 · NC_057235.1 · 69,645–70,031 bp · −
rps12 · NC_057235.1 · 70,864–70,977 bp · −
rps12 · NC_057235.1 · 98,467–99,265 bp · −
clpP1 · NC_057235.1 · 71,110–73,094 bp · −
pbf1 · NC_057235.1 · 75,463–75,594 bp · −
rpoA · NC_057235.1 · 79,014–80,033 bp · −
rps11 · NC_057235.1 · 80,105–80,521 bp · −
rpl36 · NC_057235.1 · 80,623–80,736 bp · −
infA · NC_057235.1 · 80,832–81,065 bp · −
rps8 · NC_057235.1 · 81,190–81,594 bp · −
rpl14 · NC_057235.1 · 81,778–82,146 bp · −
rpl16 · NC_057235.1 · 82,273–83,611 bp · −
rps3 · NC_057235.1 · 83,745–84,407 bp · −
rpl22 · NC_057235.1 · 84,392–84,859 bp · −
rps19 · NC_057235.1 · 84,911–85,189 bp · −
rpl2 · NC_057235.1 · 85,251–86,732 bp · −
rpl23 · NC_057235.1 · 86,751–87,032 bp · −
trnI-CAU · NC_057235.1 · 87,198–87,271 bp · −
trnL-CAA · NC_057235.1 · 94,843–94,923 bp · −
ndhB · NC_057235.1 · 95,471–97,682 bp · −
rps7 · NC_057235.1 · 97,946–98,413 bp · −
trnN-GUU · NC_057235.1 · 109,353–109,424 bp · −
ndhF · NC_057235.1 · 110,801–113,047 bp · −
ndhD · NC_057235.1 · 116,008–117,510 bp · −
psaC · NC_057235.1 · 117,636–117,881 bp · −
ndhE · NC_057235.1 · 118,144–118,449 bp · −
ndhG · NC_057235.1 · 118,663–119,193 bp · −
ndhI · NC_057235.1 · 119,550–120,056 bp · −
ndhA · NC_057235.1 · 120,139–122,314 bp · −
ndhH · NC_057235.1 · 122,316–123,497 bp · −
rps15 · NC_057235.1 · 123,596–123,868 bp · −
ycf1 · NC_057235.1 · 124,283–129,829 bp · −
trnR-ACG · NC_057235.1 · 130,802–130,875 bp · −
rrn5 · NC_057235.1 · 131,119–131,239 bp · −
rrn4.5 · NC_057235.1 · 131,495–131,597 bp · −
rrn23 · NC_057235.1 · 131,696–134,506 bp · −
trnA-UGC · NC_057235.1 · 134,675–135,552 bp · −
trnI-GAU · NC_057235.1 · 135,617–136,635 bp · −
rrn16 · NC_057235.1 · 136,934–138,424 bp · −
trnV-GAC · NC_057235.1 · 138,652–138,723 bp · −
ycf2 · NC_057235.1 · 145,342–152,205 bp · −
psbK · NC_057235.1 · 7,914–8,099 bp · +
psbI · NC_057235.1 · 8,482–8,592 bp · +
trnG-UCC · NC_057235.1 · 9,529–10,276 bp · +
trnR-UCU · NC_057235.1 · 10,458–10,529 bp · +
trnC-GCA · NC_057235.1 · 28,705–28,775 bp · +
petN · NC_057235.1 · 29,632–29,721 bp · +
trnT-GGU · NC_057235.1 · 32,192–32,263 bp · +
psbD · NC_057235.1 · 33,634–34,695 bp · +
psbC · NC_057235.1 · 34,643–36,064 bp · +
psbZ · NC_057235.1 · 36,743–36,931 bp · +
trnG-GCC · NC_057235.1 · 37,201–37,271 bp · +
trnS-GGA · NC_057235.1 · 46,029–46,115 bp · +
trnL-UAA · NC_057235.1 · 48,107–48,676 bp · +
trnF-GAA · NC_057235.1 · 48,982–49,054 bp · +
trnM-CAU · NC_057235.1 · 53,272–53,344 bp · +
rbcL · NC_057235.1 · 56,272–57,714 bp · +
accD · NC_057235.1 · 58,407–59,888 bp · +
psaI · NC_057235.1 · 60,614–60,724 bp · +
ycf4 · NC_057235.1 · 61,165–61,719 bp · +
cemA · NC_057235.1 · 62,382–63,071 bp · +
petA · NC_057235.1 · 63,286–64,248 bp · +
petL · NC_057235.1 · 67,006–67,101 bp · +
petG · NC_057235.1 · 67,276–67,389 bp · +
psaJ · NC_057235.1 · 68,092–68,226 bp · +
rpl33 · NC_057235.1 · 68,700–68,900 bp · +
rps18 · NC_057235.1 · 69,069–69,374 bp · +
rps12 · NC_057235.1 · 140,320–141,118 bp · +
psbB · NC_057235.1 · 73,564–75,090 bp · +
psbT · NC_057235.1 · 75,288–75,395 bp · +
psbH · NC_057235.1 · 75,682–75,921 bp · +
petB · NC_057235.1 · 76,046–77,433 bp · +
petD · NC_057235.1 · 77,630–78,852 bp · +
ycf2 · NC_057235.1 · 87,380–94,243 bp · +
trnV-GAC · NC_057235.1 · 100,862–100,933 bp · +
rrn16 · NC_057235.1 · 101,161–102,651 bp · +
trnI-GAU · NC_057235.1 · 102,950–103,968 bp · +
trnA-UGC · NC_057235.1 · 104,033–104,910 bp · +
rrn23 · NC_057235.1 · 105,079–107,889 bp · +
rrn4.5 · NC_057235.1 · 107,988–108,090 bp · +
rrn5 · NC_057235.1 · 108,346–108,466 bp · +
trnR-ACG · NC_057235.1 · 108,710–108,783 bp · +
ycf1 · NC_057235.1 · 109,756–110,907 bp · +
rpl32 · NC_057235.1 · 113,599–113,775 bp · +
trnL-UAG · NC_057235.1 · 114,585–114,664 bp · +
ccsA · NC_057235.1 · 114,755–115,741 bp · +
trnN-GUU · NC_057235.1 · 130,161–130,232 bp · +
rps7 · NC_057235.1 · 141,172–141,639 bp · +
ndhB · NC_057235.1 · 141,903–144,114 bp · +
trnL-CAA · NC_057235.1 · 144,662–144,742 bp · +
trnI-CAU · NC_057235.1 · 152,314–152,387 bp · +
rpl23 · NC_057235.1 · 152,553–152,834 bp · +
rpl2 · NC_057235.1 · 152,853–154,334 bp · +
rps19 · NC_057235.1 · 154,396–154,438 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Vitex negundo
ANNOTATED PLASTOME
NC_057235.1
154,438 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38610 77219 115828 154438 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 9 82 74 Locate
psbA gene − 431 1489 1059 Locate
trnK-UUU gene − 1722 4300 2579 Locate
matK gene − 2021 3550 1530 Locate
rps16 gene − 5109 6267 1159 Locate
trnQ-UUG gene − 7509 7580 72 Locate
psbK gene + 7914 8099 186 Locate
psbI gene + 8482 8592 111 Locate
trnS-GCU gene − 8721 8808 88 Locate
trnG-UCC gene + 9529 10276 748 Locate
trnR-UCU gene + 10458 10529 72 Locate
atpA gene − 10633 12156 1524 Locate
atpF gene − 12236 13503 1268 Locate
atpH gene − 13903 14148 246 Locate
atpI gene − 15183 15926 744 Locate
rps2 gene − 16176 16886 711 Locate
rpoC2 gene − 17117 21286 4170 Locate
rpoC1 gene − 21453 24293 2841 Locate
rpoB gene − 24320 27508 3189 Locate
trnC-GCA gene + 28705 28775 71 Locate
petN gene + 29632 29721 90 Locate
psbM gene − 30728 30832 105 Locate
trnD-GUC gene − 31360 31433 74 Locate
trnY-GUA gene − 31542 31625 84 Locate
trnE-UUC gene − 31685 31757 73 Locate
trnT-GGU gene + 32192 32263 72 Locate
psbD gene + 33634 34695 1062 Locate
psbC gene + 34643 36064 1422 Locate
trnS-UGA gene − 36317 36409 93 Locate
psbZ gene + 36743 36931 189 Locate
trnG-GCC gene + 37201 37271 71 Locate
trnfM-CAU gene − 37429 37502 74 Locate
rps14 gene − 37652 37954 303 Locate
psaB gene − 38077 40281 2205 Locate
psaA gene − 40307 42559 2253 Locate
ycf3 gene − 43293 45235 1943 Locate
trnS-GGA gene + 46029 46115 87 Locate
rps4 gene − 46397 47002 606 Locate
trnT-UGU gene − 47371 47443 73 Locate
trnL-UAA gene + 48107 48676 570 Locate
trnF-GAA gene + 48982 49054 73 Locate
ndhJ gene − 49722 50198 477 Locate
ndhK gene − 50305 51045 741 Locate
ndhC gene − 51036 51398 363 Locate
trnV-UAC gene − 52435 53095 661 Locate
trnM-CAU gene + 53272 53344 73 Locate
atpE gene − 53571 53972 402 Locate
atpB gene − 53969 55465 1497 Locate
rbcL gene + 56272 57714 1443 Locate
accD gene + 58407 59888 1482 Locate
psaI gene + 60614 60724 111 Locate
ycf4 gene + 61165 61719 555 Locate
cemA gene + 62382 63071 690 Locate
petA gene + 63286 64248 963 Locate
psbJ gene − 65290 65412 123 Locate
psbL gene − 65546 65662 117 Locate
psbF gene − 65686 65805 120 Locate
psbE gene − 65820 66071 252 Locate
petL gene + 67006 67101 96 Locate
petG gene + 67276 67389 114 Locate
trnW-CCA gene − 67512 67585 74 Locate
trnP-UGG gene − 67741 67814 74 Locate
psaJ gene + 68092 68226 135 Locate
rpl33 gene + 68700 68900 201 Locate
rps18 gene + 69069 69374 306 Locate
rpl20 gene − 69645 70031 387 Locate
rps12 gene − 70864 70977 114 Locate
clpP1 gene − 71110 73094 1985 Locate
psbB gene + 73564 75090 1527 Locate
psbT gene + 75288 75395 108 Locate
pbf1 gene − 75463 75594 132 Locate
psbH gene + 75682 75921 240 Locate
petB gene + 76046 77433 1388 Locate
petD gene + 77630 78852 1223 Locate
rpoA gene − 79014 80033 1020 Locate
rps11 gene − 80105 80521 417 Locate
rpl36 gene − 80623 80736 114 Locate
infA gene − 80832 81065 234 Locate
rps8 gene − 81190 81594 405 Locate
rpl14 gene − 81778 82146 369 Locate
rpl16 gene − 82273 83611 1339 Locate
rps3 gene − 83745 84407 663 Locate
rpl22 gene − 84392 84859 468 Locate
rps19 gene − 84911 85189 279 Locate
rpl2 gene − 85251 86732 1482 Locate
rpl23 gene − 86751 87032 282 Locate
trnI-CAU gene − 87198 87271 74 Locate
ycf2 gene + 87380 94243 6864 Locate
trnL-CAA gene − 94843 94923 81 Locate
ndhB gene − 95471 97682 2212 Locate
rps7 gene − 97946 98413 468 Locate
rps12 gene − 98467 99265 799 Locate
trnV-GAC gene + 100862 100933 72 Locate
rrn16 gene + 101161 102651 1491 Locate
trnI-GAU gene + 102950 103968 1019 Locate
trnA-UGC gene + 104033 104910 878 Locate
rrn23 gene + 105079 107889 2811 Locate
rrn4.5 gene + 107988 108090 103 Locate
rrn5 gene + 108346 108466 121 Locate
trnR-ACG gene + 108710 108783 74 Locate
trnN-GUU gene − 109353 109424 72 Locate
ycf1 gene + 109756 110907 1152 Locate
ndhF gene − 110801 113047 2247 Locate
rpl32 gene + 113599 113775 177 Locate
trnL-UAG gene + 114585 114664 80 Locate
ccsA gene + 114755 115741 987 Locate
ndhD gene − 116008 117510 1503 Locate
psaC gene − 117636 117881 246 Locate
ndhE gene − 118144 118449 306 Locate
ndhG gene − 118663 119193 531 Locate
ndhI gene − 119550 120056 507 Locate
ndhA gene − 120139 122314 2176 Locate
ndhH gene − 122316 123497 1182 Locate
rps15 gene − 123596 123868 273 Locate
ycf1 gene − 124283 129829 5547 Locate
trnN-GUU gene + 130161 130232 72 Locate
trnR-ACG gene − 130802 130875 74 Locate
rrn5 gene − 131119 131239 121 Locate
rrn4.5 gene − 131495 131597 103 Locate
rrn23 gene − 131696 134506 2811 Locate
trnA-UGC gene − 134675 135552 878 Locate
trnI-GAU gene − 135617 136635 1019 Locate
rrn16 gene − 136934 138424 1491 Locate
trnV-GAC gene − 138652 138723 72 Locate
rps12 gene + 140320 141118 799 Locate
rps7 gene + 141172 141639 468 Locate
ndhB gene + 141903 144114 2212 Locate
trnL-CAA gene + 144662 144742 81 Locate
ycf2 gene − 145342 152205 6864 Locate
trnI-CAU gene + 152314 152387 74 Locate
rpl23 gene + 152553 152834 282 Locate
rpl2 gene + 152853 154334 1482 Locate
rps19 gene + 154396 154438 43 Locate
Status Available
Accession NC_057235.1
Length 154,438 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 14 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources