Vitex rotundifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_050991.1 · 9–82 bp · −
psbA · NC_050991.1 · 432–1,490 bp · −
trnK-UUU · NC_050991.1 · 1,723–4,301 bp · −
matK · NC_050991.1 · 2,022–3,551 bp · −
rps16 · NC_050991.1 · 5,112–6,270 bp · −
trnQ-UUG · NC_050991.1 · 7,458–7,529 bp · −
trnS-GCU · NC_050991.1 · 8,670–8,757 bp · −
atpA · NC_050991.1 · 10,583–12,106 bp · −
atpF · NC_050991.1 · 12,187–13,455 bp · −
atpH · NC_050991.1 · 13,854–14,099 bp · −
atpI · NC_050991.1 · 15,134–15,877 bp · −
rps2 · NC_050991.1 · 16,127–16,837 bp · −
rpoC2 · NC_050991.1 · 17,067–21,236 bp · −
rpoC1 · NC_050991.1 · 21,403–24,243 bp · −
rpoB · NC_050991.1 · 24,270–27,458 bp · −
psbM · NC_050991.1 · 30,678–30,782 bp · −
trnD-GUC · NC_050991.1 · 31,309–31,382 bp · −
trnY-GUA · NC_050991.1 · 31,491–31,574 bp · −
trnE-UUC · NC_050991.1 · 31,634–31,706 bp · −
trnS-UGA · NC_050991.1 · 36,260–36,352 bp · −
trnfM-CAU · NC_050991.1 · 37,372–37,445 bp · −
rps14 · NC_050991.1 · 37,595–37,897 bp · −
psaB · NC_050991.1 · 38,020–40,224 bp · −
psaA · NC_050991.1 · 40,250–42,502 bp · −
ycf3 · NC_050991.1 · 43,236–45,179 bp · −
rps4 · NC_050991.1 · 46,341–46,946 bp · −
trnT-UGU · NC_050991.1 · 47,315–47,387 bp · −
ndhJ · NC_050991.1 · 49,668–50,144 bp · −
ndhK · NC_050991.1 · 50,251–50,928 bp · −
ndhC · NC_050991.1 · 50,982–51,344 bp · −
trnV-UAC · NC_050991.1 · 52,381–53,040 bp · −
atpE · NC_050991.1 · 53,516–53,917 bp · −
atpB · NC_050991.1 · 53,914–55,410 bp · −
psbJ · NC_050991.1 · 65,240–65,362 bp · −
psbL · NC_050991.1 · 65,496–65,612 bp · −
psbF · NC_050991.1 · 65,636–65,755 bp · −
psbE · NC_050991.1 · 65,770–66,021 bp · −
trnW-CCA · NC_050991.1 · 67,462–67,535 bp · −
trnP-UGG · NC_050991.1 · 67,691–67,764 bp · −
rpl20 · NC_050991.1 · 69,586–69,972 bp · −
rps12 · NC_050991.1 · 70,805–70,918 bp · −
rps12 · NC_050991.1 · 98,399–99,197 bp · −
clpP · NC_050991.1 · 71,051–73,033 bp · −
psbN · NC_050991.1 · 75,406–75,537 bp · −
rpoA · NC_050991.1 · 78,948–79,967 bp · −
rps11 · NC_050991.1 · 80,039–80,455 bp · −
rpl36 · NC_050991.1 · 80,557–80,670 bp · −
infA · NC_050991.1 · 80,766–80,999 bp · −
rps8 · NC_050991.1 · 81,124–81,528 bp · −
rpl14 · NC_050991.1 · 81,713–82,081 bp · −
rpl16 · NC_050991.1 · 82,208–83,544 bp · −
rps3 · NC_050991.1 · 83,678–84,340 bp · −
rpl22 · NC_050991.1 · 84,325–84,792 bp · −
rps19 · NC_050991.1 · 84,844–85,122 bp · −
rpl2 · NC_050991.1 · 85,183–86,664 bp · −
rpl23 · NC_050991.1 · 86,683–86,964 bp · −
trnI-CAU · NC_050991.1 · 87,130–87,203 bp · −
trnL-CAA · NC_050991.1 · 94,775–94,855 bp · −
ndhB · NC_050991.1 · 95,403–97,614 bp · −
rps7 · NC_050991.1 · 97,878–98,345 bp · −
trnN-GUU · NC_050991.1 · 109,287–109,358 bp · −
ndhF · NC_050991.1 · 110,735–112,981 bp · −
ndhD · NC_050991.1 · 115,944–117,446 bp · −
psaC · NC_050991.1 · 117,572–117,817 bp · −
ndhE · NC_050991.1 · 118,080–118,385 bp · −
ndhG · NC_050991.1 · 118,599–119,129 bp · −
ndhI · NC_050991.1 · 119,485–119,991 bp · −
ndhA · NC_050991.1 · 120,074–122,254 bp · −
ndhH · NC_050991.1 · 122,256–123,437 bp · −
rps15 · NC_050991.1 · 123,536–123,808 bp · −
ycf1 · NC_050991.1 · 124,223–129,760 bp · −
trnR-ACG · NC_050991.1 · 130,733–130,806 bp · −
rrn5 · NC_050991.1 · 131,050–131,170 bp · −
rrn4.5 · NC_050991.1 · 131,426–131,528 bp · −
rrn23 · NC_050991.1 · 131,627–134,437 bp · −
trnA-UGC · NC_050991.1 · 134,606–135,483 bp · −
trnI-GAU · NC_050991.1 · 135,548–136,566 bp · −
rrn16 · NC_050991.1 · 136,865–138,355 bp · −
trnV-GAC · NC_050991.1 · 138,583–138,654 bp · −
ycf2 · NC_050991.1 · 145,275–152,138 bp · −
psbK · NC_050991.1 · 7,863–8,048 bp · +
psbI · NC_050991.1 · 8,431–8,541 bp · +
trnG-UCC · NC_050991.1 · 9,479–10,226 bp · +
trnR-UCU · NC_050991.1 · 10,408–10,479 bp · +
trnC-GCA · NC_050991.1 · 28,655–28,725 bp · +
petN · NC_050991.1 · 29,582–29,671 bp · +
trnT-GGU · NC_050991.1 · 32,133–32,204 bp · +
psbD · NC_050991.1 · 33,578–34,639 bp · +
psbC · NC_050991.1 · 34,587–36,008 bp · +
psbZ · NC_050991.1 · 36,686–36,874 bp · +
trnG-GCC · NC_050991.1 · 37,144–37,214 bp · +
trnS-GGA · NC_050991.1 · 45,973–46,059 bp · +
trnL-UAA · NC_050991.1 · 48,051–48,620 bp · +
trnF-GAA · NC_050991.1 · 48,926–48,998 bp · +
trnM-CAU · NC_050991.1 · 53,217–53,289 bp · +
rbcL · NC_050991.1 · 56,208–57,650 bp · +
accD · NC_050991.1 · 58,348–59,829 bp · +
psaI · NC_050991.1 · 60,555–60,665 bp · +
ycf4 · NC_050991.1 · 61,106–61,660 bp · +
cemA · NC_050991.1 · 62,323–63,012 bp · +
petA · NC_050991.1 · 63,227–64,189 bp · +
petL · NC_050991.1 · 66,956–67,051 bp · +
petG · NC_050991.1 · 67,226–67,339 bp · +
psaJ · NC_050991.1 · 68,042–68,176 bp · +
rpl33 · NC_050991.1 · 68,654–68,854 bp · +
rps18 · NC_050991.1 · 69,023–69,328 bp · +
rps12 · NC_050991.1 · 140,253–141,051 bp · +
psbB · NC_050991.1 · 73,503–75,029 bp · +
psbT · NC_050991.1 · 75,231–75,338 bp · +
psbH · NC_050991.1 · 75,625–75,864 bp · +
petB · NC_050991.1 · 75,989–77,375 bp · +
petD · NC_050991.1 · 77,564–78,786 bp · +
ycf2 · NC_050991.1 · 87,312–94,175 bp · +
trnV-GAC · NC_050991.1 · 100,796–100,867 bp · +
rrn16 · NC_050991.1 · 101,095–102,585 bp · +
trnI-GAU · NC_050991.1 · 102,884–103,902 bp · +
trnA-UGC · NC_050991.1 · 103,967–104,844 bp · +
rrn23 · NC_050991.1 · 105,013–107,823 bp · +
rrn4.5 · NC_050991.1 · 107,922–108,024 bp · +
rrn5 · NC_050991.1 · 108,280–108,400 bp · +
trnR-ACG · NC_050991.1 · 108,644–108,717 bp · +
ycf1 · NC_050991.1 · 109,690–110,766 bp · +
rpl32 · NC_050991.1 · 113,520–113,696 bp · +
trnL-UAG · NC_050991.1 · 114,504–114,583 bp · +
ccsA · NC_050991.1 · 114,674–115,660 bp · +
trnN-GUU · NC_050991.1 · 130,092–130,163 bp · +
rps7 · NC_050991.1 · 141,105–141,572 bp · +
ndhB · NC_050991.1 · 141,836–144,047 bp · +
trnL-CAA · NC_050991.1 · 144,595–144,675 bp · +
trnI-CAU · NC_050991.1 · 152,247–152,320 bp · +
rpl23 · NC_050991.1 · 152,486–152,767 bp · +
rpl2 · NC_050991.1 · 152,786–154,267 bp · +
rps19 · NC_050991.1 · 154,328–154,370 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Vitex rotundifolia
ANNOTATED PLASTOME
NC_050991.1
154,370 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38592 77185 115778 154370 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 9 82 74 Locate
psbA gene − 432 1490 1059 Locate
trnK-UUU gene − 1723 4301 2579 Locate
matK gene − 2022 3551 1530 Locate
rps16 gene − 5112 6270 1159 Locate
trnQ-UUG gene − 7458 7529 72 Locate
psbK gene + 7863 8048 186 Locate
psbI gene + 8431 8541 111 Locate
trnS-GCU gene − 8670 8757 88 Locate
trnG-UCC gene + 9479 10226 748 Locate
trnR-UCU gene + 10408 10479 72 Locate
atpA gene − 10583 12106 1524 Locate
atpF gene − 12187 13455 1269 Locate
atpH gene − 13854 14099 246 Locate
atpI gene − 15134 15877 744 Locate
rps2 gene − 16127 16837 711 Locate
rpoC2 gene − 17067 21236 4170 Locate
rpoC1 gene − 21403 24243 2841 Locate
rpoB gene − 24270 27458 3189 Locate
trnC-GCA gene + 28655 28725 71 Locate
petN gene + 29582 29671 90 Locate
psbM gene − 30678 30782 105 Locate
trnD-GUC gene − 31309 31382 74 Locate
trnY-GUA gene − 31491 31574 84 Locate
trnE-UUC gene − 31634 31706 73 Locate
trnT-GGU gene + 32133 32204 72 Locate
psbD gene + 33578 34639 1062 Locate
psbC gene + 34587 36008 1422 Locate
trnS-UGA gene − 36260 36352 93 Locate
psbZ gene + 36686 36874 189 Locate
trnG-GCC gene + 37144 37214 71 Locate
trnfM-CAU gene − 37372 37445 74 Locate
rps14 gene − 37595 37897 303 Locate
psaB gene − 38020 40224 2205 Locate
psaA gene − 40250 42502 2253 Locate
ycf3 gene − 43236 45179 1944 Locate
trnS-GGA gene + 45973 46059 87 Locate
rps4 gene − 46341 46946 606 Locate
trnT-UGU gene − 47315 47387 73 Locate
trnL-UAA gene + 48051 48620 570 Locate
trnF-GAA gene + 48926 48998 73 Locate
ndhJ gene − 49668 50144 477 Locate
ndhK gene − 50251 50928 678 Locate
ndhC gene − 50982 51344 363 Locate
trnV-UAC gene − 52381 53040 660 Locate
trnM-CAU gene + 53217 53289 73 Locate
atpE gene − 53516 53917 402 Locate
atpB gene − 53914 55410 1497 Locate
rbcL gene + 56208 57650 1443 Locate
accD gene + 58348 59829 1482 Locate
psaI gene + 60555 60665 111 Locate
ycf4 gene + 61106 61660 555 Locate
cemA gene + 62323 63012 690 Locate
petA gene + 63227 64189 963 Locate
psbJ gene − 65240 65362 123 Locate
psbL gene − 65496 65612 117 Locate
psbF gene − 65636 65755 120 Locate
psbE gene − 65770 66021 252 Locate
petL gene + 66956 67051 96 Locate
petG gene + 67226 67339 114 Locate
trnW-CCA gene − 67462 67535 74 Locate
trnP-UGG gene − 67691 67764 74 Locate
psaJ gene + 68042 68176 135 Locate
rpl33 gene + 68654 68854 201 Locate
rps18 gene + 69023 69328 306 Locate
rpl20 gene − 69586 69972 387 Locate
rps12 gene − 70805 70918 114 Locate
clpP gene − 71051 73033 1983 Locate
psbB gene + 73503 75029 1527 Locate
psbT gene + 75231 75338 108 Locate
psbN gene − 75406 75537 132 Locate
psbH gene + 75625 75864 240 Locate
petB gene + 75989 77375 1387 Locate
petD gene + 77564 78786 1223 Locate
rpoA gene − 78948 79967 1020 Locate
rps11 gene − 80039 80455 417 Locate
rpl36 gene − 80557 80670 114 Locate
infA gene − 80766 80999 234 Locate
rps8 gene − 81124 81528 405 Locate
rpl14 gene − 81713 82081 369 Locate
rpl16 gene − 82208 83544 1337 Locate
rps3 gene − 83678 84340 663 Locate
rpl22 gene − 84325 84792 468 Locate
rps19 gene − 84844 85122 279 Locate
rpl2 gene − 85183 86664 1482 Locate
rpl23 gene − 86683 86964 282 Locate
trnI-CAU gene − 87130 87203 74 Locate
ycf2 gene + 87312 94175 6864 Locate
trnL-CAA gene − 94775 94855 81 Locate
ndhB gene − 95403 97614 2212 Locate
rps7 gene − 97878 98345 468 Locate
rps12 gene − 98399 99197 799 Locate
trnV-GAC gene + 100796 100867 72 Locate
rrn16 gene + 101095 102585 1491 Locate
trnI-GAU gene + 102884 103902 1019 Locate
trnA-UGC gene + 103967 104844 878 Locate
rrn23 gene + 105013 107823 2811 Locate
rrn4.5 gene + 107922 108024 103 Locate
rrn5 gene + 108280 108400 121 Locate
trnR-ACG gene + 108644 108717 74 Locate
trnN-GUU gene − 109287 109358 72 Locate
ycf1 gene + 109690 110766 1077 Locate
ndhF gene − 110735 112981 2247 Locate
rpl32 gene + 113520 113696 177 Locate
trnL-UAG gene + 114504 114583 80 Locate
ccsA gene + 114674 115660 987 Locate
ndhD gene − 115944 117446 1503 Locate
psaC gene − 117572 117817 246 Locate
ndhE gene − 118080 118385 306 Locate
ndhG gene − 118599 119129 531 Locate
ndhI gene − 119485 119991 507 Locate
ndhA gene − 120074 122254 2181 Locate
ndhH gene − 122256 123437 1182 Locate
rps15 gene − 123536 123808 273 Locate
ycf1 gene − 124223 129760 5538 Locate
trnN-GUU gene + 130092 130163 72 Locate
trnR-ACG gene − 130733 130806 74 Locate
rrn5 gene − 131050 131170 121 Locate
rrn4.5 gene − 131426 131528 103 Locate
rrn23 gene − 131627 134437 2811 Locate
trnA-UGC gene − 134606 135483 878 Locate
trnI-GAU gene − 135548 136566 1019 Locate
rrn16 gene − 136865 138355 1491 Locate
trnV-GAC gene − 138583 138654 72 Locate
rps12 gene + 140253 141051 799 Locate
rps7 gene + 141105 141572 468 Locate
ndhB gene + 141836 144047 2212 Locate
trnL-CAA gene + 144595 144675 81 Locate
ycf2 gene − 145275 152138 6864 Locate
trnI-CAU gene + 152247 152320 74 Locate
rpl23 gene + 152486 152767 282 Locate
rpl2 gene + 152786 154267 1482 Locate
rps19 gene + 154328 154370 43 Locate
Status Available
Accession NC_050991.1
Length 154,370 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 13 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources