Ziziphora capitata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PV226239.1 · 12–85 bp · −
psbA · PV226239.1 · 400–1,458 bp · −
trnK-UUU · PV226239.1 · 1,686–4,275 bp · −
matK · PV226239.1 · 2,010–3,539 bp · −
rps16 · PV226239.1 · 4,811–5,952 bp · −
trnQ-UUG · PV226239.1 · 6,843–6,914 bp · −
trnS-GCU · PV226239.1 · 8,119–8,206 bp · −
atpA · PV226239.1 · 10,037–11,560 bp · −
atpF · PV226239.1 · 11,653–12,907 bp · −
atpH · PV226239.1 · 13,180–13,425 bp · −
atpI · PV226239.1 · 14,463–15,206 bp · −
rps2 · PV226239.1 · 15,431–16,141 bp · −
rpoC2 · PV226239.1 · 16,369–20,568 bp · −
rpoC1 · PV226239.1 · 20,722–23,533 bp · −
rpoB · PV226239.1 · 23,560–26,772 bp · −
psbM · PV226239.1 · 29,154–29,258 bp · −
trnD-GUC · PV226239.1 · 29,783–29,856 bp · −
trnY-GUA · PV226239.1 · 29,974–30,057 bp · −
trnE-UUC · PV226239.1 · 30,137–30,209 bp · −
trnS-UGA · PV226239.1 · 34,880–34,972 bp · −
trnfM-CAU · PV226239.1 · 36,015–36,088 bp · −
rps14 · PV226239.1 · 36,233–36,535 bp · −
psaB · PV226239.1 · 36,661–38,865 bp · −
psaA · PV226239.1 · 38,891–41,143 bp · −
ycf3 · PV226239.1 · 41,926–43,867 bp · −
rps4 · PV226239.1 · 45,086–45,691 bp · −
trnT-UGU · PV226239.1 · 46,061–46,133 bp · −
ndhJ · PV226239.1 · 48,389–48,865 bp · −
ndhC · PV226239.1 · 49,705–50,067 bp · −
trnV-UAC · PV226239.1 · 51,032–51,676 bp · −
atpE · PV226239.1 · 52,140–52,541 bp · −
atpB · PV226239.1 · 52,538–53,971 bp · −
psbJ · PV226239.1 · 63,351–63,473 bp · −
psbL · PV226239.1 · 63,603–63,824 bp · −
psbF · PV226239.1 · 63,743–63,862 bp · −
psbE · PV226239.1 · 63,877–64,128 bp · −
trnW-CCA · PV226239.1 · 65,494–65,567 bp · −
trnP-UGG · PV226239.1 · 65,741–65,814 bp · −
rpl20 · PV226239.1 · 67,569–67,955 bp · −
rps12 · PV226239.1 · 68,761–68,874 bp · −
rps12 · PV226239.1 · 96,183–96,976 bp · −
clpP · PV226239.1 · 68,997–70,918 bp · −
psbN · PV226239.1 · 73,278–73,409 bp · −
rpoA · PV226239.1 · 76,822–77,829 bp · −
rps11 · PV226239.1 · 77,900–78,316 bp · −
rpl36 · PV226239.1 · 78,426–78,539 bp · −
infA · PV226239.1 · 78,635–78,868 bp · −
rps8 · PV226239.1 · 78,993–79,397 bp · −
rpl14 · PV226239.1 · 79,573–79,941 bp · −
rpl16 · PV226239.1 · 80,080–81,367 bp · −
rps3 · PV226239.1 · 81,518–82,180 bp · −
rpl22 · PV226239.1 · 82,165–82,632 bp · −
rps19 · PV226239.1 · 82,702–82,851 bp · −
rpl2 · PV226239.1 · 83,040–84,537 bp · −
rpl23 · PV226239.1 · 84,556–84,837 bp · −
trnI-CAU · PV226239.1 · 85,003–85,076 bp · −
trnL-CAA · PV226239.1 · 92,548–92,628 bp · −
ndhB · PV226239.1 · 93,189–95,342 bp · −
rps7 · PV226239.1 · 95,662–96,129 bp · −
trnN-GUU · PV226239.1 · 107,072–107,143 bp · −
ndhF · PV226239.1 · 108,497–110,728 bp · −
ndhD · PV226239.1 · 113,493–115,022 bp · −
psaC · PV226239.1 · 115,123–115,368 bp · −
ndhE · PV226239.1 · 115,609–115,911 bp · −
ndhG · PV226239.1 · 116,129–116,659 bp · −
ndhI · PV226239.1 · 117,047–117,553 bp · −
ndhA · PV226239.1 · 117,629–119,714 bp · −
ndhH · PV226239.1 · 119,716–120,951 bp · −
rps15 · PV226239.1 · 120,997–121,269 bp · −
ycf1 · PV226239.1 · 121,686–127,301 bp · −
trnR-ACG · PV226239.1 · 128,116–128,189 bp · −
rrn5 · PV226239.1 · 128,433–128,553 bp · −
rrn4.5 · PV226239.1 · 128,814–128,916 bp · −
rrn23 · PV226239.1 · 129,017–131,825 bp · −
trnA-UGC · PV226239.1 · 131,990–132,867 bp · −
trnI-GAU · PV226239.1 · 132,938–133,957 bp · −
rrn16 · PV226239.1 · 134,256–135,746 bp · −
trnV-GAC · PV226239.1 · 135,979–136,050 bp · −
ycf15 · PV226239.1 · 142,371–142,568 bp · −
ycf2 · PV226239.1 · 142,710–149,498 bp · −
psbK · PV226239.1 · 7,295–7,486 bp · +
psbI · PV226239.1 · 7,877–7,987 bp · +
trnG-UCC · PV226239.1 · 8,925–9,676 bp · +
trnR-UCU · PV226239.1 · 9,857–9,928 bp · +
trnC-GCA · PV226239.1 · 27,875–27,945 bp · +
petN · PV226239.1 · 28,106–28,195 bp · +
trnT-GGU · PV226239.1 · 30,761–30,832 bp · +
psbD · PV226239.1 · 32,204–33,265 bp · +
psbC · PV226239.1 · 33,213–34,634 bp · +
psbZ · PV226239.1 · 35,311–35,499 bp · +
trnG-GCC · PV226239.1 · 35,769–35,839 bp · +
trnS-GGA · PV226239.1 · 44,712–44,798 bp · +
trnL-UAA · PV226239.1 · 46,807–47,383 bp · +
trnF-GAA · PV226239.1 · 47,676–47,748 bp · +
trnM-CAU · PV226239.1 · 51,857–51,929 bp · +
rbcL · PV226239.1 · 54,790–56,244 bp · +
accD · PV226239.1 · 57,004–58,485 bp · +
psaI · PV226239.1 · 58,958–59,068 bp · +
ycf4 · PV226239.1 · 59,519–60,073 bp · +
cemA · PV226239.1 · 60,453–61,142 bp · +
petA · PV226239.1 · 61,367–62,329 bp · +
petL · PV226239.1 · 65,001–65,096 bp · +
petG · PV226239.1 · 65,266–65,379 bp · +
psaJ · PV226239.1 · 66,067–66,225 bp · +
rpl33 · PV226239.1 · 66,678–66,881 bp · +
rps18 · PV226239.1 · 67,032–67,337 bp · +
rps12 · PV226239.1 · 137,687–138,480 bp · +
psbB · PV226239.1 · 71,384–72,910 bp · +
psbT · PV226239.1 · 73,108–73,209 bp · +
psbH · PV226239.1 · 73,515–73,736 bp · +
petB · PV226239.1 · 73,870–75,240 bp · +
petD · PV226239.1 · 75,428–76,622 bp · +
ycf2 · PV226239.1 · 85,165–91,953 bp · +
ycf15 · PV226239.1 · 92,095–92,292 bp · +
trnV-GAC · PV226239.1 · 98,613–98,690 bp · +
rrn16 · PV226239.1 · 98,917–100,407 bp · +
trnI-GAU · PV226239.1 · 100,706–101,725 bp · +
trnA-UGC · PV226239.1 · 101,796–102,673 bp · +
rrn23 · PV226239.1 · 102,838–105,646 bp · +
rrn4.5 · PV226239.1 · 105,747–105,849 bp · +
rrn5 · PV226239.1 · 106,110–106,230 bp · +
trnR-ACG · PV226239.1 · 106,474–106,547 bp · +
rpl32 · PV226239.1 · 111,155–111,325 bp · +
trnL-UAG · PV226239.1 · 112,086–112,165 bp · +
ccsA · PV226239.1 · 112,267–113,244 bp · +
trnN-GUU · PV226239.1 · 127,520–127,591 bp · +
rps7 · PV226239.1 · 138,534–139,001 bp · +
ndhB · PV226239.1 · 139,321–141,474 bp · +
trnL-CAA · PV226239.1 · 142,035–142,115 bp · +
trnI-CAU · PV226239.1 · 149,587–149,660 bp · +
rpl23 · PV226239.1 · 149,826–150,107 bp · +
rpl2 · PV226239.1 · 150,126–151,623 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Ziziphora capitata
ANNOTATED PLASTOME
PV226239.1
151,725 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37931 75862 113794 151725 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 12 85 74 Locate
psbA gene − 400 1458 1059 Locate
trnK-UUU gene − 1686 4275 2590 Locate
matK gene − 2010 3539 1530 Locate
rps16 gene − 4811 5952 1142 Locate
trnQ-UUG gene − 6843 6914 72 Locate
psbK gene + 7295 7486 192 Locate
psbI gene + 7877 7987 111 Locate
trnS-GCU gene − 8119 8206 88 Locate
trnG-UCC gene + 8925 9676 752 Locate
trnR-UCU gene + 9857 9928 72 Locate
atpA gene − 10037 11560 1524 Locate
atpF gene − 11653 12907 1255 Locate
atpH gene − 13180 13425 246 Locate
atpI gene − 14463 15206 744 Locate
rps2 gene − 15431 16141 711 Locate
rpoC2 gene − 16369 20568 4200 Locate
rpoC1 gene − 20722 23533 2812 Locate
rpoB gene − 23560 26772 3213 Locate
trnC-GCA gene + 27875 27945 71 Locate
petN gene + 28106 28195 90 Locate
psbM gene − 29154 29258 105 Locate
trnD-GUC gene − 29783 29856 74 Locate
trnY-GUA gene − 29974 30057 84 Locate
trnE-UUC gene − 30137 30209 73 Locate
trnT-GGU gene + 30761 30832 72 Locate
psbD gene + 32204 33265 1062 Locate
psbC gene + 33213 34634 1422 Locate
trnS-UGA gene − 34880 34972 93 Locate
psbZ gene + 35311 35499 189 Locate
trnG-GCC gene + 35769 35839 71 Locate
trnfM-CAU gene − 36015 36088 74 Locate
rps14 gene − 36233 36535 303 Locate
psaB gene − 36661 38865 2205 Locate
psaA gene − 38891 41143 2253 Locate
ycf3 gene − 41926 43867 1942 Locate
trnS-GGA gene + 44712 44798 87 Locate
rps4 gene − 45086 45691 606 Locate
trnT-UGU gene − 46061 46133 73 Locate
trnL-UAA gene + 46807 47383 577 Locate
trnF-GAA gene + 47676 47748 73 Locate
ndhJ gene − 48389 48865 477 Locate
ndhC gene − 49705 50067 363 Locate
trnV-UAC gene − 51032 51676 645 Locate
trnM-CAU gene + 51857 51929 73 Locate
atpE gene − 52140 52541 402 Locate
atpB gene − 52538 53971 1434 Locate
rbcL gene + 54790 56244 1455 Locate
accD gene + 57004 58485 1482 Locate
psaI gene + 58958 59068 111 Locate
ycf4 gene + 59519 60073 555 Locate
cemA gene + 60453 61142 690 Locate
petA gene + 61367 62329 963 Locate
psbJ gene − 63351 63473 123 Locate
psbL gene − 63603 63824 222 Locate
psbF gene − 63743 63862 120 Locate
psbE gene − 63877 64128 252 Locate
petL gene + 65001 65096 96 Locate
petG gene + 65266 65379 114 Locate
trnW-CCA gene − 65494 65567 74 Locate
trnP-UGG gene − 65741 65814 74 Locate
psaJ gene + 66067 66225 159 Locate
rpl33 gene + 66678 66881 204 Locate
rps18 gene + 67032 67337 306 Locate
rpl20 gene − 67569 67955 387 Locate
rps12 gene − 68761 68874 114 Locate
clpP gene − 68997 70918 1922 Locate
psbB gene + 71384 72910 1527 Locate
psbT gene + 73108 73209 102 Locate
psbN gene − 73278 73409 132 Locate
psbH gene + 73515 73736 222 Locate
petB gene + 73870 75240 1371 Locate
petD gene + 75428 76622 1195 Locate
rpoA gene − 76822 77829 1008 Locate
rps11 gene − 77900 78316 417 Locate
rpl36 gene − 78426 78539 114 Locate
infA gene − 78635 78868 234 Locate
rps8 gene − 78993 79397 405 Locate
rpl14 gene − 79573 79941 369 Locate
rpl16 gene − 80080 81367 1288 Locate
rps3 gene − 81518 82180 663 Locate
rpl22 gene − 82165 82632 468 Locate
rps19 gene − 82702 82851 150 Locate
rpl2 gene − 83040 84537 1498 Locate
rpl23 gene − 84556 84837 282 Locate
trnI-CAU gene − 85003 85076 74 Locate
ycf2 gene + 85165 91953 6789 Locate
ycf15 gene + 92095 92292 198 Locate
trnL-CAA gene − 92548 92628 81 Locate
ndhB gene − 93189 95342 2154 Locate
rps7 gene − 95662 96129 468 Locate
rps12 gene − 96183 96976 794 Locate
trnV-GAC gene + 98613 98690 78 Locate
rrn16 gene + 98917 100407 1491 Locate
trnI-GAU gene + 100706 101725 1020 Locate
trnA-UGC gene + 101796 102673 878 Locate
rrn23 gene + 102838 105646 2809 Locate
rrn4.5 gene + 105747 105849 103 Locate
rrn5 gene + 106110 106230 121 Locate
trnR-ACG gene + 106474 106547 74 Locate
trnN-GUU gene − 107072 107143 72 Locate
ndhF gene − 108497 110728 2232 Locate
rpl32 gene + 111155 111325 171 Locate
trnL-UAG gene + 112086 112165 80 Locate
ccsA gene + 112267 113244 978 Locate
ndhD gene − 113493 115022 1530 Locate
psaC gene − 115123 115368 246 Locate
ndhE gene − 115609 115911 303 Locate
ndhG gene − 116129 116659 531 Locate
ndhI gene − 117047 117553 507 Locate
ndhA gene − 117629 119714 2086 Locate
ndhH gene − 119716 120951 1236 Locate
rps15 gene − 120997 121269 273 Locate
ycf1 gene − 121686 127301 5616 Locate
trnN-GUU gene + 127520 127591 72 Locate
trnR-ACG gene − 128116 128189 74 Locate
rrn5 gene − 128433 128553 121 Locate
rrn4.5 gene − 128814 128916 103 Locate
rrn23 gene − 129017 131825 2809 Locate
trnA-UGC gene − 131990 132867 878 Locate
trnI-GAU gene − 132938 133957 1020 Locate
rrn16 gene − 134256 135746 1491 Locate
trnV-GAC gene − 135979 136050 72 Locate
rps12 gene + 137687 138480 794 Locate
rps7 gene + 138534 139001 468 Locate
ndhB gene + 139321 141474 2154 Locate
trnL-CAA gene + 142035 142115 81 Locate
ycf15 gene − 142371 142568 198 Locate
ycf2 gene − 142710 149498 6789 Locate
trnI-CAU gene + 149587 149660 74 Locate
rpl23 gene + 149826 150107 282 Locate
rpl2 gene + 150126 151623 1498 Locate
Status Available
Accession PV226239.1
Length 151,725 bp
GC content 37.8%
Annotated genes 131
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 11 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources