Ziziphora pamiroalaica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PV138186.1 · 12–85 bp · −
psbA · PV138186.1 · 400–1,458 bp · −
trnK-UUU · PV138186.1 · 1,686–4,275 bp · −
matK · PV138186.1 · 2,010–3,539 bp · −
rps16 · PV138186.1 · 4,812–5,953 bp · −
trnQ-UUG · PV138186.1 · 6,848–6,919 bp · −
trnS-GCU · PV138186.1 · 8,123–8,210 bp · −
atpA · PV138186.1 · 10,041–11,564 bp · −
atpF · PV138186.1 · 11,657–12,920 bp · −
atpH · PV138186.1 · 13,193–13,438 bp · −
atpI · PV138186.1 · 14,470–15,213 bp · −
rps2 · PV138186.1 · 15,437–16,147 bp · −
rpoC2 · PV138186.1 · 16,378–20,577 bp · −
rpoC1 · PV138186.1 · 20,731–23,542 bp · −
rpoB · PV138186.1 · 23,569–26,781 bp · −
psbM · PV138186.1 · 29,182–29,286 bp · −
trnD-GUC · PV138186.1 · 29,811–29,884 bp · −
trnY-GUA · PV138186.1 · 30,002–30,085 bp · −
trnE-UUC · PV138186.1 · 30,165–30,237 bp · −
trnS-UGA · PV138186.1 · 34,908–35,000 bp · −
trnfM-CAU · PV138186.1 · 36,044–36,117 bp · −
rps14 · PV138186.1 · 36,262–36,564 bp · −
psaB · PV138186.1 · 36,690–38,894 bp · −
psaA · PV138186.1 · 38,920–41,172 bp · −
ycf3 · PV138186.1 · 41,960–43,901 bp · −
rps4 · PV138186.1 · 45,120–45,725 bp · −
trnT-UGU · PV138186.1 · 46,095–46,167 bp · −
ndhJ · PV138186.1 · 48,428–48,904 bp · −
ndhC · PV138186.1 · 49,744–50,106 bp · −
trnV-UAC · PV138186.1 · 51,072–51,716 bp · −
atpE · PV138186.1 · 52,180–52,581 bp · −
atpB · PV138186.1 · 52,578–54,011 bp · −
psbJ · PV138186.1 · 63,387–63,509 bp · −
psbL · PV138186.1 · 63,639–63,860 bp · −
psbF · PV138186.1 · 63,779–63,898 bp · −
psbE · PV138186.1 · 63,913–64,164 bp · −
trnW-CCA · PV138186.1 · 65,530–65,603 bp · −
trnP-UGG · PV138186.1 · 65,777–65,850 bp · −
rpl20 · PV138186.1 · 67,614–68,000 bp · −
rps12 · PV138186.1 · 68,814–68,927 bp · −
rps12 · PV138186.1 · 96,204–96,997 bp · −
clpP · PV138186.1 · 69,050–70,977 bp · −
psbN · PV138186.1 · 73,331–73,462 bp · −
rpoA · PV138186.1 · 76,869–77,876 bp · −
rps11 · PV138186.1 · 77,947–78,363 bp · −
rpl36 · PV138186.1 · 78,473–78,586 bp · −
infA · PV138186.1 · 78,682–78,915 bp · −
rps8 · PV138186.1 · 79,040–79,444 bp · −
rpl14 · PV138186.1 · 79,620–79,988 bp · −
rpl16 · PV138186.1 · 80,127–81,406 bp · −
rps3 · PV138186.1 · 81,557–82,219 bp · −
rpl22 · PV138186.1 · 82,204–82,671 bp · −
rps19 · PV138186.1 · 82,741–82,890 bp · −
rpl2 · PV138186.1 · 83,079–84,576 bp · −
rpl23 · PV138186.1 · 84,595–84,876 bp · −
trnI-CAU · PV138186.1 · 85,042–85,115 bp · −
trnL-CAA · PV138186.1 · 92,569–92,649 bp · −
ndhB · PV138186.1 · 93,210–95,363 bp · −
rps7 · PV138186.1 · 95,683–96,150 bp · −
trnN-GUU · PV138186.1 · 107,093–107,164 bp · −
ndhF · PV138186.1 · 108,518–110,749 bp · −
ndhD · PV138186.1 · 113,514–115,043 bp · −
psaC · PV138186.1 · 115,144–115,389 bp · −
ndhE · PV138186.1 · 115,630–115,932 bp · −
ndhG · PV138186.1 · 116,150–116,680 bp · −
ndhI · PV138186.1 · 117,065–117,571 bp · −
ndhA · PV138186.1 · 117,647–119,726 bp · −
ndhH · PV138186.1 · 119,728–120,963 bp · −
rps15 · PV138186.1 · 121,009–121,281 bp · −
ycf1 · PV138186.1 · 121,698–127,319 bp · −
trnR-ACG · PV138186.1 · 128,134–128,207 bp · −
rrn5 · PV138186.1 · 128,451–128,571 bp · −
rrn4.5 · PV138186.1 · 128,832–128,934 bp · −
rrn23 · PV138186.1 · 129,035–131,843 bp · −
trnA-UGC · PV138186.1 · 132,008–132,885 bp · −
trnI-GAU · PV138186.1 · 132,956–133,975 bp · −
rrn16 · PV138186.1 · 134,274–135,764 bp · −
trnV-GAC · PV138186.1 · 135,997–136,068 bp · −
ycf15 · PV138186.1 · 142,389–142,586 bp · −
ycf2 · PV138186.1 · 142,728–149,498 bp · −
psbK · PV138186.1 · 7,300–7,491 bp · +
psbI · PV138186.1 · 7,882–7,992 bp · +
trnG-UCC · PV138186.1 · 8,929–9,680 bp · +
trnR-UCU · PV138186.1 · 9,861–9,932 bp · +
trnC-GCA · PV138186.1 · 27,904–27,974 bp · +
petN · PV138186.1 · 28,135–28,224 bp · +
trnT-GGU · PV138186.1 · 30,789–30,860 bp · +
psbD · PV138186.1 · 32,232–33,293 bp · +
psbC · PV138186.1 · 33,241–34,662 bp · +
psbZ · PV138186.1 · 35,339–35,527 bp · +
trnG-GCC · PV138186.1 · 35,797–35,867 bp · +
trnS-GGA · PV138186.1 · 44,746–44,832 bp · +
trnL-UAA · PV138186.1 · 46,846–47,422 bp · +
trnF-GAA · PV138186.1 · 47,715–47,787 bp · +
trnM-CAU · PV138186.1 · 51,897–51,969 bp · +
rbcL · PV138186.1 · 54,829–56,283 bp · +
accD · PV138186.1 · 57,046–58,527 bp · +
psaI · PV138186.1 · 59,000–59,110 bp · +
ycf4 · PV138186.1 · 59,561–60,115 bp · +
cemA · PV138186.1 · 60,495–61,184 bp · +
petA · PV138186.1 · 61,409–62,371 bp · +
petL · PV138186.1 · 65,037–65,132 bp · +
petG · PV138186.1 · 65,302–65,415 bp · +
psaJ · PV138186.1 · 66,100–66,258 bp · +
rpl33 · PV138186.1 · 66,722–66,925 bp · +
rps18 · PV138186.1 · 67,076–67,381 bp · +
rps12 · PV138186.1 · 137,705–138,498 bp · +
psbB · PV138186.1 · 71,443–72,969 bp · +
psbT · PV138186.1 · 73,161–73,262 bp · +
psbH · PV138186.1 · 73,568–73,789 bp · +
petB · PV138186.1 · 73,923–75,293 bp · +
petD · PV138186.1 · 75,481–76,669 bp · +
ycf2 · PV138186.1 · 85,204–91,974 bp · +
ycf15 · PV138186.1 · 92,116–92,313 bp · +
trnV-GAC · PV138186.1 · 98,634–98,711 bp · +
rrn16 · PV138186.1 · 98,938–100,428 bp · +
trnI-GAU · PV138186.1 · 100,727–101,746 bp · +
trnA-UGC · PV138186.1 · 101,817–102,694 bp · +
rrn23 · PV138186.1 · 102,859–105,667 bp · +
rrn4.5 · PV138186.1 · 105,768–105,870 bp · +
rrn5 · PV138186.1 · 106,131–106,251 bp · +
trnR-ACG · PV138186.1 · 106,495–106,568 bp · +
rpl32 · PV138186.1 · 111,176–111,346 bp · +
trnL-UAG · PV138186.1 · 112,107–112,186 bp · +
ccsA · PV138186.1 · 112,288–113,265 bp · +
trnN-GUU · PV138186.1 · 127,538–127,609 bp · +
rps7 · PV138186.1 · 138,552–139,019 bp · +
ndhB · PV138186.1 · 139,339–141,492 bp · +
trnL-CAA · PV138186.1 · 142,053–142,133 bp · +
trnI-CAU · PV138186.1 · 149,587–149,660 bp · +
rpl23 · PV138186.1 · 149,826–150,107 bp · +
rpl2 · PV138186.1 · 150,126–151,623 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Ziziphora pamiroalaica
ANNOTATED PLASTOME
PV138186.1
151,725 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37931 75862 113794 151725 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 12 85 74 Locate
psbA gene − 400 1458 1059 Locate
trnK-UUU gene − 1686 4275 2590 Locate
matK gene − 2010 3539 1530 Locate
rps16 gene − 4812 5953 1142 Locate
trnQ-UUG gene − 6848 6919 72 Locate
psbK gene + 7300 7491 192 Locate
psbI gene + 7882 7992 111 Locate
trnS-GCU gene − 8123 8210 88 Locate
trnG-UCC gene + 8929 9680 752 Locate
trnR-UCU gene + 9861 9932 72 Locate
atpA gene − 10041 11564 1524 Locate
atpF gene − 11657 12920 1264 Locate
atpH gene − 13193 13438 246 Locate
atpI gene − 14470 15213 744 Locate
rps2 gene − 15437 16147 711 Locate
rpoC2 gene − 16378 20577 4200 Locate
rpoC1 gene − 20731 23542 2812 Locate
rpoB gene − 23569 26781 3213 Locate
trnC-GCA gene + 27904 27974 71 Locate
petN gene + 28135 28224 90 Locate
psbM gene − 29182 29286 105 Locate
trnD-GUC gene − 29811 29884 74 Locate
trnY-GUA gene − 30002 30085 84 Locate
trnE-UUC gene − 30165 30237 73 Locate
trnT-GGU gene + 30789 30860 72 Locate
psbD gene + 32232 33293 1062 Locate
psbC gene + 33241 34662 1422 Locate
trnS-UGA gene − 34908 35000 93 Locate
psbZ gene + 35339 35527 189 Locate
trnG-GCC gene + 35797 35867 71 Locate
trnfM-CAU gene − 36044 36117 74 Locate
rps14 gene − 36262 36564 303 Locate
psaB gene − 36690 38894 2205 Locate
psaA gene − 38920 41172 2253 Locate
ycf3 gene − 41960 43901 1942 Locate
trnS-GGA gene + 44746 44832 87 Locate
rps4 gene − 45120 45725 606 Locate
trnT-UGU gene − 46095 46167 73 Locate
trnL-UAA gene + 46846 47422 577 Locate
trnF-GAA gene + 47715 47787 73 Locate
ndhJ gene − 48428 48904 477 Locate
ndhC gene − 49744 50106 363 Locate
trnV-UAC gene − 51072 51716 645 Locate
trnM-CAU gene + 51897 51969 73 Locate
atpE gene − 52180 52581 402 Locate
atpB gene − 52578 54011 1434 Locate
rbcL gene + 54829 56283 1455 Locate
accD gene + 57046 58527 1482 Locate
psaI gene + 59000 59110 111 Locate
ycf4 gene + 59561 60115 555 Locate
cemA gene + 60495 61184 690 Locate
petA gene + 61409 62371 963 Locate
psbJ gene − 63387 63509 123 Locate
psbL gene − 63639 63860 222 Locate
psbF gene − 63779 63898 120 Locate
psbE gene − 63913 64164 252 Locate
petL gene + 65037 65132 96 Locate
petG gene + 65302 65415 114 Locate
trnW-CCA gene − 65530 65603 74 Locate
trnP-UGG gene − 65777 65850 74 Locate
psaJ gene + 66100 66258 159 Locate
rpl33 gene + 66722 66925 204 Locate
rps18 gene + 67076 67381 306 Locate
rpl20 gene − 67614 68000 387 Locate
rps12 gene − 68814 68927 114 Locate
clpP gene − 69050 70977 1928 Locate
psbB gene + 71443 72969 1527 Locate
psbT gene + 73161 73262 102 Locate
psbN gene − 73331 73462 132 Locate
psbH gene + 73568 73789 222 Locate
petB gene + 73923 75293 1371 Locate
petD gene + 75481 76669 1189 Locate
rpoA gene − 76869 77876 1008 Locate
rps11 gene − 77947 78363 417 Locate
rpl36 gene − 78473 78586 114 Locate
infA gene − 78682 78915 234 Locate
rps8 gene − 79040 79444 405 Locate
rpl14 gene − 79620 79988 369 Locate
rpl16 gene − 80127 81406 1280 Locate
rps3 gene − 81557 82219 663 Locate
rpl22 gene − 82204 82671 468 Locate
rps19 gene − 82741 82890 150 Locate
rpl2 gene − 83079 84576 1498 Locate
rpl23 gene − 84595 84876 282 Locate
trnI-CAU gene − 85042 85115 74 Locate
ycf2 gene + 85204 91974 6771 Locate
ycf15 gene + 92116 92313 198 Locate
trnL-CAA gene − 92569 92649 81 Locate
ndhB gene − 93210 95363 2154 Locate
rps7 gene − 95683 96150 468 Locate
rps12 gene − 96204 96997 794 Locate
trnV-GAC gene + 98634 98711 78 Locate
rrn16 gene + 98938 100428 1491 Locate
trnI-GAU gene + 100727 101746 1020 Locate
trnA-UGC gene + 101817 102694 878 Locate
rrn23 gene + 102859 105667 2809 Locate
rrn4.5 gene + 105768 105870 103 Locate
rrn5 gene + 106131 106251 121 Locate
trnR-ACG gene + 106495 106568 74 Locate
trnN-GUU gene − 107093 107164 72 Locate
ndhF gene − 108518 110749 2232 Locate
rpl32 gene + 111176 111346 171 Locate
trnL-UAG gene + 112107 112186 80 Locate
ccsA gene + 112288 113265 978 Locate
ndhD gene − 113514 115043 1530 Locate
psaC gene − 115144 115389 246 Locate
ndhE gene − 115630 115932 303 Locate
ndhG gene − 116150 116680 531 Locate
ndhI gene − 117065 117571 507 Locate
ndhA gene − 117647 119726 2080 Locate
ndhH gene − 119728 120963 1236 Locate
rps15 gene − 121009 121281 273 Locate
ycf1 gene − 121698 127319 5622 Locate
trnN-GUU gene + 127538 127609 72 Locate
trnR-ACG gene − 128134 128207 74 Locate
rrn5 gene − 128451 128571 121 Locate
rrn4.5 gene − 128832 128934 103 Locate
rrn23 gene − 129035 131843 2809 Locate
trnA-UGC gene − 132008 132885 878 Locate
trnI-GAU gene − 132956 133975 1020 Locate
rrn16 gene − 134274 135764 1491 Locate
trnV-GAC gene − 135997 136068 72 Locate
rps12 gene + 137705 138498 794 Locate
rps7 gene + 138552 139019 468 Locate
ndhB gene + 139339 141492 2154 Locate
trnL-CAA gene + 142053 142133 81 Locate
ycf15 gene − 142389 142586 198 Locate
ycf2 gene − 142728 149498 6771 Locate
trnI-CAU gene + 149587 149660 74 Locate
rpl23 gene + 149826 150107 282 Locate
rpl2 gene + 150126 151623 1498 Locate
Status Available
Accession PV138186.1
Length 151,725 bp
GC content 37.8%
Annotated genes 131
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 11 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources