Ziziphora pedicellata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PV138187.1 · 12–85 bp · −
psbA · PV138187.1 · 400–1,458 bp · −
trnK-UUU · PV138187.1 · 1,686–4,275 bp · −
matK · PV138187.1 · 2,010–3,539 bp · −
rps16 · PV138187.1 · 4,812–5,953 bp · −
trnQ-UUG · PV138187.1 · 6,848–6,919 bp · −
trnS-GCU · PV138187.1 · 8,125–8,212 bp · −
atpA · PV138187.1 · 10,043–11,566 bp · −
atpF · PV138187.1 · 11,659–12,922 bp · −
atpH · PV138187.1 · 13,195–13,440 bp · −
atpI · PV138187.1 · 14,473–15,216 bp · −
rps2 · PV138187.1 · 15,440–16,150 bp · −
rpoC2 · PV138187.1 · 16,377–20,576 bp · −
rpoC1 · PV138187.1 · 20,730–23,541 bp · −
rpoB · PV138187.1 · 23,568–26,780 bp · −
psbM · PV138187.1 · 29,180–29,284 bp · −
trnD-GUC · PV138187.1 · 29,809–29,882 bp · −
trnY-GUA · PV138187.1 · 30,000–30,083 bp · −
trnE-UUC · PV138187.1 · 30,163–30,235 bp · −
trnS-UGA · PV138187.1 · 34,906–34,998 bp · −
trnfM-CAU · PV138187.1 · 36,041–36,114 bp · −
rps14 · PV138187.1 · 36,259–36,561 bp · −
psaB · PV138187.1 · 36,687–38,891 bp · −
psaA · PV138187.1 · 38,917–41,169 bp · −
ycf3 · PV138187.1 · 41,957–43,898 bp · −
rps4 · PV138187.1 · 45,117–45,722 bp · −
trnT-UGU · PV138187.1 · 46,092–46,164 bp · −
ndhJ · PV138187.1 · 48,425–48,901 bp · −
ndhC · PV138187.1 · 49,741–50,103 bp · −
trnV-UAC · PV138187.1 · 51,069–51,713 bp · −
atpE · PV138187.1 · 52,177–52,578 bp · −
atpB · PV138187.1 · 52,575–54,008 bp · −
psbJ · PV138187.1 · 63,400–63,522 bp · −
psbL · PV138187.1 · 63,652–63,873 bp · −
psbF · PV138187.1 · 63,792–63,911 bp · −
psbE · PV138187.1 · 63,926–64,177 bp · −
trnW-CCA · PV138187.1 · 65,543–65,616 bp · −
trnP-UGG · PV138187.1 · 65,790–65,863 bp · −
rpl20 · PV138187.1 · 67,627–68,013 bp · −
rps12 · PV138187.1 · 68,828–68,941 bp · −
rps12 · PV138187.1 · 96,210–97,003 bp · −
clpP · PV138187.1 · 69,064–70,991 bp · −
psbN · PV138187.1 · 73,343–73,474 bp · −
rpoA · PV138187.1 · 76,875–77,882 bp · −
rps11 · PV138187.1 · 77,953–78,369 bp · −
rpl36 · PV138187.1 · 78,479–78,592 bp · −
infA · PV138187.1 · 78,688–78,921 bp · −
rps8 · PV138187.1 · 79,046–79,450 bp · −
rpl14 · PV138187.1 · 79,626–79,994 bp · −
rpl16 · PV138187.1 · 80,133–81,412 bp · −
rps3 · PV138187.1 · 81,563–82,225 bp · −
rpl22 · PV138187.1 · 82,210–82,677 bp · −
rps19 · PV138187.1 · 82,747–82,896 bp · −
rpl2 · PV138187.1 · 83,085–84,582 bp · −
rpl23 · PV138187.1 · 84,601–84,882 bp · −
trnI-CAU · PV138187.1 · 85,048–85,121 bp · −
trnL-CAA · PV138187.1 · 92,575–92,655 bp · −
ndhB · PV138187.1 · 93,216–95,369 bp · −
rps7 · PV138187.1 · 95,689–96,156 bp · −
trnN-GUU · PV138187.1 · 107,108–107,179 bp · −
ndhF · PV138187.1 · 108,533–110,764 bp · −
ndhD · PV138187.1 · 113,530–115,059 bp · −
psaC · PV138187.1 · 115,160–115,405 bp · −
ndhE · PV138187.1 · 115,646–115,948 bp · −
ndhG · PV138187.1 · 116,166–116,696 bp · −
ndhI · PV138187.1 · 117,081–117,587 bp · −
ndhA · PV138187.1 · 117,663–119,742 bp · −
ndhH · PV138187.1 · 119,744–120,979 bp · −
rps15 · PV138187.1 · 121,025–121,297 bp · −
ycf1 · PV138187.1 · 121,714–127,335 bp · −
trnR-ACG · PV138187.1 · 128,150–128,223 bp · −
rrn5 · PV138187.1 · 128,467–128,587 bp · −
rrn4.5 · PV138187.1 · 128,848–128,950 bp · −
rrn23 · PV138187.1 · 129,051–131,859 bp · −
trnA-UGC · PV138187.1 · 132,033–132,910 bp · −
trnI-GAU · PV138187.1 · 132,981–134,000 bp · −
rrn16 · PV138187.1 · 134,299–135,789 bp · −
trnV-GAC · PV138187.1 · 136,022–136,093 bp · −
ycf15 · PV138187.1 · 142,414–142,611 bp · −
ycf2 · PV138187.1 · 142,753–149,523 bp · −
psbK · PV138187.1 · 7,300–7,491 bp · +
psbI · PV138187.1 · 7,882–7,992 bp · +
trnG-UCC · PV138187.1 · 8,931–9,682 bp · +
trnR-UCU · PV138187.1 · 9,863–9,934 bp · +
trnC-GCA · PV138187.1 · 27,902–27,972 bp · +
petN · PV138187.1 · 28,133–28,222 bp · +
trnT-GGU · PV138187.1 · 30,787–30,858 bp · +
psbD · PV138187.1 · 32,230–33,291 bp · +
psbC · PV138187.1 · 33,239–34,660 bp · +
psbZ · PV138187.1 · 35,337–35,525 bp · +
trnG-GCC · PV138187.1 · 35,795–35,865 bp · +
trnS-GGA · PV138187.1 · 44,743–44,829 bp · +
trnL-UAA · PV138187.1 · 46,843–47,419 bp · +
trnF-GAA · PV138187.1 · 47,712–47,784 bp · +
trnM-CAU · PV138187.1 · 51,894–51,966 bp · +
rbcL · PV138187.1 · 54,827–56,281 bp · +
accD · PV138187.1 · 57,037–58,518 bp · +
psaI · PV138187.1 · 58,991–59,101 bp · +
ycf4 · PV138187.1 · 59,552–60,106 bp · +
cemA · PV138187.1 · 60,486–61,175 bp · +
petA · PV138187.1 · 61,421–62,383 bp · +
petL · PV138187.1 · 65,050–65,145 bp · +
petG · PV138187.1 · 65,315–65,428 bp · +
psaJ · PV138187.1 · 66,113–66,271 bp · +
rpl33 · PV138187.1 · 66,735–66,938 bp · +
rps18 · PV138187.1 · 67,089–67,394 bp · +
rps12 · PV138187.1 · 137,730–138,523 bp · +
psbB · PV138187.1 · 71,457–72,983 bp · +
psbT · PV138187.1 · 73,173–73,274 bp · +
psbH · PV138187.1 · 73,580–73,801 bp · +
petB · PV138187.1 · 73,935–75,305 bp · +
petD · PV138187.1 · 75,493–76,681 bp · +
ycf2 · PV138187.1 · 85,210–91,980 bp · +
ycf15 · PV138187.1 · 92,122–92,319 bp · +
trnV-GAC · PV138187.1 · 98,640–98,717 bp · +
rrn16 · PV138187.1 · 98,944–100,434 bp · +
trnI-GAU · PV138187.1 · 100,733–101,752 bp · +
trnA-UGC · PV138187.1 · 101,823–102,700 bp · +
rrn23 · PV138187.1 · 102,874–105,682 bp · +
rrn4.5 · PV138187.1 · 105,783–105,885 bp · +
rrn5 · PV138187.1 · 106,146–106,266 bp · +
trnR-ACG · PV138187.1 · 106,510–106,583 bp · +
rpl32 · PV138187.1 · 111,191–111,361 bp · +
trnL-UAG · PV138187.1 · 112,122–112,201 bp · +
ccsA · PV138187.1 · 112,304–113,281 bp · +
trnN-GUU · PV138187.1 · 127,554–127,625 bp · +
rps7 · PV138187.1 · 138,577–139,044 bp · +
ndhB · PV138187.1 · 139,364–141,517 bp · +
trnL-CAA · PV138187.1 · 142,078–142,158 bp · +
trnI-CAU · PV138187.1 · 149,612–149,685 bp · +
rpl23 · PV138187.1 · 149,851–150,132 bp · +
rpl2 · PV138187.1 · 150,151–151,648 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Ziziphora pedicellata
ANNOTATED PLASTOME
PV138187.1
151,750 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37938 75875 113812 151750 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 12 85 74 Locate
psbA gene − 400 1458 1059 Locate
trnK-UUU gene − 1686 4275 2590 Locate
matK gene − 2010 3539 1530 Locate
rps16 gene − 4812 5953 1142 Locate
trnQ-UUG gene − 6848 6919 72 Locate
psbK gene + 7300 7491 192 Locate
psbI gene + 7882 7992 111 Locate
trnS-GCU gene − 8125 8212 88 Locate
trnG-UCC gene + 8931 9682 752 Locate
trnR-UCU gene + 9863 9934 72 Locate
atpA gene − 10043 11566 1524 Locate
atpF gene − 11659 12922 1264 Locate
atpH gene − 13195 13440 246 Locate
atpI gene − 14473 15216 744 Locate
rps2 gene − 15440 16150 711 Locate
rpoC2 gene − 16377 20576 4200 Locate
rpoC1 gene − 20730 23541 2812 Locate
rpoB gene − 23568 26780 3213 Locate
trnC-GCA gene + 27902 27972 71 Locate
petN gene + 28133 28222 90 Locate
psbM gene − 29180 29284 105 Locate
trnD-GUC gene − 29809 29882 74 Locate
trnY-GUA gene − 30000 30083 84 Locate
trnE-UUC gene − 30163 30235 73 Locate
trnT-GGU gene + 30787 30858 72 Locate
psbD gene + 32230 33291 1062 Locate
psbC gene + 33239 34660 1422 Locate
trnS-UGA gene − 34906 34998 93 Locate
psbZ gene + 35337 35525 189 Locate
trnG-GCC gene + 35795 35865 71 Locate
trnfM-CAU gene − 36041 36114 74 Locate
rps14 gene − 36259 36561 303 Locate
psaB gene − 36687 38891 2205 Locate
psaA gene − 38917 41169 2253 Locate
ycf3 gene − 41957 43898 1942 Locate
trnS-GGA gene + 44743 44829 87 Locate
rps4 gene − 45117 45722 606 Locate
trnT-UGU gene − 46092 46164 73 Locate
trnL-UAA gene + 46843 47419 577 Locate
trnF-GAA gene + 47712 47784 73 Locate
ndhJ gene − 48425 48901 477 Locate
ndhC gene − 49741 50103 363 Locate
trnV-UAC gene − 51069 51713 645 Locate
trnM-CAU gene + 51894 51966 73 Locate
atpE gene − 52177 52578 402 Locate
atpB gene − 52575 54008 1434 Locate
rbcL gene + 54827 56281 1455 Locate
accD gene + 57037 58518 1482 Locate
psaI gene + 58991 59101 111 Locate
ycf4 gene + 59552 60106 555 Locate
cemA gene + 60486 61175 690 Locate
petA gene + 61421 62383 963 Locate
psbJ gene − 63400 63522 123 Locate
psbL gene − 63652 63873 222 Locate
psbF gene − 63792 63911 120 Locate
psbE gene − 63926 64177 252 Locate
petL gene + 65050 65145 96 Locate
petG gene + 65315 65428 114 Locate
trnW-CCA gene − 65543 65616 74 Locate
trnP-UGG gene − 65790 65863 74 Locate
psaJ gene + 66113 66271 159 Locate
rpl33 gene + 66735 66938 204 Locate
rps18 gene + 67089 67394 306 Locate
rpl20 gene − 67627 68013 387 Locate
rps12 gene − 68828 68941 114 Locate
clpP gene − 69064 70991 1928 Locate
psbB gene + 71457 72983 1527 Locate
psbT gene + 73173 73274 102 Locate
psbN gene − 73343 73474 132 Locate
psbH gene + 73580 73801 222 Locate
petB gene + 73935 75305 1371 Locate
petD gene + 75493 76681 1189 Locate
rpoA gene − 76875 77882 1008 Locate
rps11 gene − 77953 78369 417 Locate
rpl36 gene − 78479 78592 114 Locate
infA gene − 78688 78921 234 Locate
rps8 gene − 79046 79450 405 Locate
rpl14 gene − 79626 79994 369 Locate
rpl16 gene − 80133 81412 1280 Locate
rps3 gene − 81563 82225 663 Locate
rpl22 gene − 82210 82677 468 Locate
rps19 gene − 82747 82896 150 Locate
rpl2 gene − 83085 84582 1498 Locate
rpl23 gene − 84601 84882 282 Locate
trnI-CAU gene − 85048 85121 74 Locate
ycf2 gene + 85210 91980 6771 Locate
ycf15 gene + 92122 92319 198 Locate
trnL-CAA gene − 92575 92655 81 Locate
ndhB gene − 93216 95369 2154 Locate
rps7 gene − 95689 96156 468 Locate
rps12 gene − 96210 97003 794 Locate
trnV-GAC gene + 98640 98717 78 Locate
rrn16 gene + 98944 100434 1491 Locate
trnI-GAU gene + 100733 101752 1020 Locate
trnA-UGC gene + 101823 102700 878 Locate
rrn23 gene + 102874 105682 2809 Locate
rrn4.5 gene + 105783 105885 103 Locate
rrn5 gene + 106146 106266 121 Locate
trnR-ACG gene + 106510 106583 74 Locate
trnN-GUU gene − 107108 107179 72 Locate
ndhF gene − 108533 110764 2232 Locate
rpl32 gene + 111191 111361 171 Locate
trnL-UAG gene + 112122 112201 80 Locate
ccsA gene + 112304 113281 978 Locate
ndhD gene − 113530 115059 1530 Locate
psaC gene − 115160 115405 246 Locate
ndhE gene − 115646 115948 303 Locate
ndhG gene − 116166 116696 531 Locate
ndhI gene − 117081 117587 507 Locate
ndhA gene − 117663 119742 2080 Locate
ndhH gene − 119744 120979 1236 Locate
rps15 gene − 121025 121297 273 Locate
ycf1 gene − 121714 127335 5622 Locate
trnN-GUU gene + 127554 127625 72 Locate
trnR-ACG gene − 128150 128223 74 Locate
rrn5 gene − 128467 128587 121 Locate
rrn4.5 gene − 128848 128950 103 Locate
rrn23 gene − 129051 131859 2809 Locate
trnA-UGC gene − 132033 132910 878 Locate
trnI-GAU gene − 132981 134000 1020 Locate
rrn16 gene − 134299 135789 1491 Locate
trnV-GAC gene − 136022 136093 72 Locate
rps12 gene + 137730 138523 794 Locate
rps7 gene + 138577 139044 468 Locate
ndhB gene + 139364 141517 2154 Locate
trnL-CAA gene + 142078 142158 81 Locate
ycf15 gene − 142414 142611 198 Locate
ycf2 gene − 142753 149523 6771 Locate
trnI-CAU gene + 149612 149685 74 Locate
rpl23 gene + 149851 150132 282 Locate
rpl2 gene + 150151 151648 1498 Locate
Status Available
Accession PV138187.1
Length 151,750 bp
GC content 37.8%
Annotated genes 131
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 11 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources