Agastache rugosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_053706.1 · 6–79 bp · −
psbA · NC_053706.1 · 338–1,396 bp · −
trnK-UUU · NC_053706.1 · 1,634–4,216 bp · −
matK · NC_053706.1 · 1,924–3,480 bp · −
rps16 · NC_053706.1 · 4,479–4,700 bp · −
trnQ-UUG · NC_053706.1 · 6,627–6,698 bp · −
trnS-GCU · NC_053706.1 · 7,916–8,003 bp · −
atpA · NC_053706.1 · 9,823–11,346 bp · −
atpF · NC_053706.1 · 11,446–12,696 bp · −
atpH · NC_053706.1 · 12,975–13,220 bp · −
atpI · NC_053706.1 · 14,240–14,983 bp · −
rps2 · NC_053706.1 · 15,206–15,916 bp · −
rpoC2 · NC_053706.1 · 16,126–20,313 bp · −
rpoC1 · NC_053706.1 · 20,474–23,290 bp · −
rpoB · NC_053706.1 · 23,317–26,529 bp · −
psbM · NC_053706.1 · 29,008–29,112 bp · −
trnD-GUC · NC_053706.1 · 29,631–29,704 bp · −
trnY-GUA · NC_053706.1 · 29,817–29,900 bp · −
trnE-UUC · NC_053706.1 · 29,968–30,040 bp · −
trnS-UGA · NC_053706.1 · 34,641–34,733 bp · −
trnM-CAU · NC_053706.1 · 35,782–35,855 bp · −
rps14 · NC_053706.1 · 36,005–36,307 bp · −
psaB · NC_053706.1 · 36,430–38,634 bp · −
psaA · NC_053706.1 · 38,660–40,912 bp · −
ycf3 · NC_053706.1 · 41,719–43,659 bp · −
rps4 · NC_053706.1 · 44,706–45,311 bp · −
trnT-UGU · NC_053706.1 · 45,683–45,755 bp · −
ndhJ · NC_053706.1 · 48,061–48,537 bp · −
ndhK · NC_053706.1 · 48,648–49,325 bp · −
ndhC · NC_053706.1 · 49,377–49,739 bp · −
trnV-UAC · NC_053706.1 · 50,700–51,348 bp · −
atpE · NC_053706.1 · 51,812–52,213 bp · −
atpB · NC_053706.1 · 52,210–53,706 bp · −
psbJ · NC_053706.1 · 63,275–63,397 bp · −
psbL · NC_053706.1 · 63,532–63,648 bp · −
psbF · NC_053706.1 · 63,672–63,791 bp · −
psbE · NC_053706.1 · 63,806–64,057 bp · −
trnW-CCA · NC_053706.1 · 65,471–65,544 bp · −
trnP-UGG · NC_053706.1 · 65,718–65,791 bp · −
rpl20 · NC_053706.1 · 67,557–67,943 bp · −
rps12 · NC_053706.1 · 68,753–68,866 bp · −
rps12 · NC_053706.1 · 96,152–96,945 bp · −
clpP · NC_053706.1 · 68,990–70,910 bp · −
psbN · NC_053706.1 · 73,224–73,355 bp · −
rpoA · NC_053706.1 · 76,740–77,747 bp · −
rps11 · NC_053706.1 · 77,819–78,235 bp · −
rpl36 · NC_053706.1 · 78,355–78,468 bp · −
infA · NC_053706.1 · 78,564–78,803 bp · −
rps8 · NC_053706.1 · 78,930–79,334 bp · −
rpl14 · NC_053706.1 · 79,521–79,889 bp · −
rpl16 · NC_053706.1 · 80,021–81,304 bp · −
rps3 · NC_053706.1 · 81,459–82,121 bp · −
rpl22 · NC_053706.1 · 82,123–82,578 bp · −
rps19 · NC_053706.1 · 82,648–82,926 bp · −
rpl2 · NC_053706.1 · 82,987–84,476 bp · −
rpl23 · NC_053706.1 · 84,495–84,776 bp · −
trnI-CAU · NC_053706.1 · 84,938–85,011 bp · −
trnL-CAA · NC_053706.1 · 92,516–92,596 bp · −
ndhB · NC_053706.1 · 93,159–95,366 bp · −
rps7 · NC_053706.1 · 95,631–96,098 bp · −
trnN-GUU · NC_053706.1 · 107,036–107,107 bp · −
ndhF · NC_053706.1 · 108,461–110,692 bp · −
ndhD · NC_053706.1 · 113,493–115,022 bp · −
psaC · NC_053706.1 · 115,114–115,359 bp · −
ndhE · NC_053706.1 · 115,612–115,917 bp · −
ndhG · NC_053706.1 · 116,147–116,677 bp · −
ndhI · NC_053706.1 · 117,065–117,571 bp · −
ndhA · NC_053706.1 · 117,652–119,755 bp · −
ndhH · NC_053706.1 · 119,757–120,944 bp · −
rps15 · NC_053706.1 · 121,044–121,316 bp · −
ycf1 · NC_053706.1 · 121,774–127,350 bp · −
trnR-ACG · NC_053706.1 · 128,277–128,350 bp · −
rrn5S · NC_053706.1 · 128,594–128,715 bp · −
rrn4.5S · NC_053706.1 · 128,808–129,077 bp · −
rrn23S · NC_053706.1 · 129,176–131,986 bp · −
trnA-UGC · NC_053706.1 · 132,152–133,029 bp · −
trnI-GAU · NC_053706.1 · 133,099–134,117 bp · −
rrn16S · NC_053706.1 · 134,416–135,906 bp · −
trnV-GAC · NC_053706.1 · 136,133–136,204 bp · −
ycf15 · NC_053706.1 · 142,530–142,727 bp · −
ycf2 · NC_053706.1 · 142,869–149,687 bp · −
psbK · NC_053706.1 · 7,091–7,276 bp · +
psbI · NC_053706.1 · 7,664–7,774 bp · +
trnS-CGA · NC_053706.1 · 8,708–9,464 bp · +
trnR-UCU · NC_053706.1 · 9,645–9,716 bp · +
trnC-GCA · NC_053706.1 · 27,693–27,763 bp · +
petN · NC_053706.1 · 27,918–28,013 bp · +
trnT-GGU · NC_053706.1 · 30,614–30,685 bp · +
psbD · NC_053706.1 · 31,967–33,028 bp · +
psbC · NC_053706.1 · 32,976–34,397 bp · +
psbZ · NC_053706.1 · 35,072–35,260 bp · +
trnG-GCC · NC_053706.1 · 35,541–35,611 bp · +
trnS-GGA · NC_053706.1 · 44,503–44,589 bp · +
trnL-UAA · NC_053706.1 · 46,483–47,051 bp · +
trnF-GAA · NC_053706.1 · 47,342–47,414 bp · +
trnM-CAU · NC_053706.1 · 51,529–51,601 bp · +
rbcL · NC_053706.1 · 54,505–55,938 bp · +
accD · NC_053706.1 · 56,631–58,112 bp · +
psaI · NC_053706.1 · 58,589–58,699 bp · +
ycf4 · NC_053706.1 · 59,148–59,702 bp · +
cemA · NC_053706.1 · 60,370–61,059 bp · +
petA · NC_053706.1 · 61,281–62,243 bp · +
petL · NC_053706.1 · 64,961–65,056 bp · +
petG · NC_053706.1 · 65,234–65,347 bp · +
psaJ · NC_053706.1 · 66,077–66,211 bp · +
rpl33 · NC_053706.1 · 66,646–66,846 bp · +
rps18 · NC_053706.1 · 67,031–67,336 bp · +
rps12 · NC_053706.1 · 137,842–138,635 bp · +
psbB · NC_053706.1 · 71,343–72,869 bp · +
psbT · NC_053706.1 · 73,056–73,163 bp · +
psbH · NC_053706.1 · 73,443–73,682 bp · +
petB · NC_053706.1 · 73,808–75,186 bp · +
petD · NC_053706.1 · 75,374–76,563 bp · +
ycf2 · NC_053706.1 · 85,100–91,918 bp · +
ycf15 · NC_053706.1 · 92,060–92,257 bp · +
trnV-GAC · NC_053706.1 · 98,583–98,654 bp · +
rrn16S · NC_053706.1 · 98,881–100,371 bp · +
trnI-GAU · NC_053706.1 · 100,670–101,688 bp · +
trnA-UGC · NC_053706.1 · 101,758–102,635 bp · +
rrn23S · NC_053706.1 · 102,801–105,611 bp · +
rrn4.5S · NC_053706.1 · 105,710–105,979 bp · +
rrn5S · NC_053706.1 · 106,072–106,193 bp · +
trnR-ACG · NC_053706.1 · 106,437–106,510 bp · +
ycf1 · NC_053706.1 · 107,326–108,567 bp · +
rpl32 · NC_053706.1 · 111,149–111,319 bp · +
trnL-UAG · NC_053706.1 · 112,073–112,152 bp · +
ccsA · NC_053706.1 · 112,253–113,230 bp · +
trnN-GUU · NC_053706.1 · 127,680–127,751 bp · +
rps7 · NC_053706.1 · 138,689–139,156 bp · +
ndhB · NC_053706.1 · 139,421–141,628 bp · +
trnL-CAA · NC_053706.1 · 142,191–142,271 bp · +
trnI-CAU · NC_053706.1 · 149,776–149,849 bp · +
rpl23 · NC_053706.1 · 150,011–150,292 bp · +
rpl2 · NC_053706.1 · 150,311–151,800 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Agastache rugosa
ANNOTATED PLASTOME
NC_053706.1
151,922 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37980 75961 113942 151922 bp
Forward strand 5′ → 3′
psbK psbI trnS-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 6 79 74 Locate
psbA gene − 338 1396 1059 Locate
trnK-UUU gene − 1634 4216 2583 Locate
matK gene − 1924 3480 1557 Locate
rps16 gene − 4479 4700 222 Locate
trnQ-UUG gene − 6627 6698 72 Locate
psbK gene + 7091 7276 186 Locate
psbI gene + 7664 7774 111 Locate
trnS-GCU gene − 7916 8003 88 Locate
trnS-CGA gene + 8708 9464 757 Locate
trnR-UCU gene + 9645 9716 72 Locate
atpA gene − 9823 11346 1524 Locate
atpF gene − 11446 12696 1251 Locate
atpH gene − 12975 13220 246 Locate
atpI gene − 14240 14983 744 Locate
rps2 gene − 15206 15916 711 Locate
rpoC2 gene − 16126 20313 4188 Locate
rpoC1 gene − 20474 23290 2817 Locate
rpoB gene − 23317 26529 3213 Locate
trnC-GCA gene + 27693 27763 71 Locate
petN gene + 27918 28013 96 Locate
psbM gene − 29008 29112 105 Locate
trnD-GUC gene − 29631 29704 74 Locate
trnY-GUA gene − 29817 29900 84 Locate
trnE-UUC gene − 29968 30040 73 Locate
trnT-GGU gene + 30614 30685 72 Locate
psbD gene + 31967 33028 1062 Locate
psbC gene + 32976 34397 1422 Locate
trnS-UGA gene − 34641 34733 93 Locate
psbZ gene + 35072 35260 189 Locate
trnG-GCC gene + 35541 35611 71 Locate
trnM-CAU gene − 35782 35855 74 Locate
rps14 gene − 36005 36307 303 Locate
psaB gene − 36430 38634 2205 Locate
psaA gene − 38660 40912 2253 Locate
ycf3 gene − 41719 43659 1941 Locate
trnS-GGA gene + 44503 44589 87 Locate
rps4 gene − 44706 45311 606 Locate
trnT-UGU gene − 45683 45755 73 Locate
trnL-UAA gene + 46483 47051 569 Locate
trnF-GAA gene + 47342 47414 73 Locate
ndhJ gene − 48061 48537 477 Locate
ndhK gene − 48648 49325 678 Locate
ndhC gene − 49377 49739 363 Locate
trnV-UAC gene − 50700 51348 649 Locate
trnM-CAU gene + 51529 51601 73 Locate
atpE gene − 51812 52213 402 Locate
atpB gene − 52210 53706 1497 Locate
rbcL gene + 54505 55938 1434 Locate
accD gene + 56631 58112 1482 Locate
psaI gene + 58589 58699 111 Locate
ycf4 gene + 59148 59702 555 Locate
cemA gene + 60370 61059 690 Locate
petA gene + 61281 62243 963 Locate
psbJ gene − 63275 63397 123 Locate
psbL gene − 63532 63648 117 Locate
psbF gene − 63672 63791 120 Locate
psbE gene − 63806 64057 252 Locate
petL gene + 64961 65056 96 Locate
petG gene + 65234 65347 114 Locate
trnW-CCA gene − 65471 65544 74 Locate
trnP-UGG gene − 65718 65791 74 Locate
psaJ gene + 66077 66211 135 Locate
rpl33 gene + 66646 66846 201 Locate
rps18 gene + 67031 67336 306 Locate
rpl20 gene − 67557 67943 387 Locate
rps12 gene − 68753 68866 114 Locate
clpP gene − 68990 70910 1921 Locate
psbB gene + 71343 72869 1527 Locate
psbT gene + 73056 73163 108 Locate
psbN gene − 73224 73355 132 Locate
psbH gene + 73443 73682 240 Locate
petB gene + 73808 75186 1379 Locate
petD gene + 75374 76563 1190 Locate
rpoA gene − 76740 77747 1008 Locate
rps11 gene − 77819 78235 417 Locate
rpl36 gene − 78355 78468 114 Locate
infA gene − 78564 78803 240 Locate
rps8 gene − 78930 79334 405 Locate
rpl14 gene − 79521 79889 369 Locate
rpl16 gene − 80021 81304 1284 Locate
rps3 gene − 81459 82121 663 Locate
rpl22 gene − 82123 82578 456 Locate
rps19 gene − 82648 82926 279 Locate
rpl2 gene − 82987 84476 1490 Locate
rpl23 gene − 84495 84776 282 Locate
trnI-CAU gene − 84938 85011 74 Locate
ycf2 gene + 85100 91918 6819 Locate
ycf15 gene + 92060 92257 198 Locate
trnL-CAA gene − 92516 92596 81 Locate
ndhB gene − 93159 95366 2208 Locate
rps7 gene − 95631 96098 468 Locate
rps12 gene − 96152 96945 794 Locate
trnV-GAC gene + 98583 98654 72 Locate
rrn16S gene + 98881 100371 1491 Locate
trnI-GAU gene + 100670 101688 1019 Locate
trnA-UGC gene + 101758 102635 878 Locate
rrn23S gene + 102801 105611 2811 Locate
rrn4.5S gene + 105710 105979 270 Locate
rrn5S gene + 106072 106193 122 Locate
trnR-ACG gene + 106437 106510 74 Locate
trnN-GUU gene − 107036 107107 72 Locate
ycf1 gene + 107326 108567 1242 Locate
ndhF gene − 108461 110692 2232 Locate
rpl32 gene + 111149 111319 171 Locate
trnL-UAG gene + 112073 112152 80 Locate
ccsA gene + 112253 113230 978 Locate
ndhD gene − 113493 115022 1530 Locate
psaC gene − 115114 115359 246 Locate
ndhE gene − 115612 115917 306 Locate
ndhG gene − 116147 116677 531 Locate
ndhI gene − 117065 117571 507 Locate
ndhA gene − 117652 119755 2104 Locate
ndhH gene − 119757 120944 1188 Locate
rps15 gene − 121044 121316 273 Locate
ycf1 gene − 121774 127350 5577 Locate
trnN-GUU gene + 127680 127751 72 Locate
trnR-ACG gene − 128277 128350 74 Locate
rrn5S gene − 128594 128715 122 Locate
rrn4.5S gene − 128808 129077 270 Locate
rrn23S gene − 129176 131986 2811 Locate
trnA-UGC gene − 132152 133029 878 Locate
trnI-GAU gene − 133099 134117 1019 Locate
rrn16S gene − 134416 135906 1491 Locate
trnV-GAC gene − 136133 136204 72 Locate
rps12 gene + 137842 138635 794 Locate
rps7 gene + 138689 139156 468 Locate
ndhB gene + 139421 141628 2208 Locate
trnL-CAA gene + 142191 142271 81 Locate
ycf15 gene − 142530 142727 198 Locate
ycf2 gene − 142869 149687 6819 Locate
trnI-CAU gene + 149776 149849 74 Locate
rpl23 gene + 150011 150292 282 Locate
rpl2 gene + 150311 151800 1490 Locate
Status Available
Accession NC_053706.1
Length 151,922 bp
GC content 37.9%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources