Coordinate-aware organelle record

Agastache rugosa chloroplast genome

Available NC_053706.1 151,922 bp 133 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

133 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	5	79	74
psbA	gene	photosystem-ii	−	337	1396	1059
trnK-UUU	gene	translation-rna	−	1633	4216	2583
matK	gene	other	−	1923	3480	1557
rps16	gene	ribosomal-protein	−	4478	4700	222
trnQ-UUG	gene	translation-rna	−	6626	6698	72
psbK	gene	photosystem-ii	+	7090	7276	186
psbI	gene	photosystem-ii	+	7663	7774	111
trnS-GCU	gene	translation-rna	−	7915	8003	88
trnS-CGA	gene	translation-rna	+	8707	9464	757
trnR-UCU	gene	translation-rna	+	9644	9716	72
atpA	gene	atp-synthase	−	9822	11346	1524
atpF	gene	atp-synthase	−	11445	12696	1251
atpH	gene	atp-synthase	−	12974	13220	246
atpI	gene	atp-synthase	−	14239	14983	744
rps2	gene	ribosomal-protein	−	15205	15916	711
rpoC2	gene	rna-polymerase	−	16125	20313	4188
rpoC1	gene	rna-polymerase	−	20473	23290	2817
rpoB	gene	rna-polymerase	−	23316	26529	3213
trnC-GCA	gene	translation-rna	+	27692	27763	71
petN	gene	cytochrome	+	27917	28013	96
psbM	gene	photosystem-ii	−	29007	29112	105
trnD-GUC	gene	translation-rna	−	29630	29704	74
trnY-GUA	gene	translation-rna	−	29816	29900	84
trnE-UUC	gene	translation-rna	−	29967	30040	73
trnT-GGU	gene	translation-rna	+	30613	30685	72
psbD	gene	photosystem-ii	+	31966	33028	1062
psbC	gene	photosystem-ii	+	32975	34397	1422
trnS-UGA	gene	translation-rna	−	34640	34733	93
psbZ	gene	photosystem-ii	+	35071	35260	189
trnG-GCC	gene	translation-rna	+	35540	35611	71
trnM-CAU	gene	translation-rna	−	35781	35855	74
rps14	gene	ribosomal-protein	−	36004	36307	303
psaB	gene	photosystem-i	−	36429	38634	2205
psaA	gene	photosystem-i	−	38659	40912	2253
ycf3	gene	other	−	41718	43659	1941
trnS-GGA	gene	translation-rna	+	44502	44589	87
rps4	gene	ribosomal-protein	−	44705	45311	606
trnT-UGU	gene	translation-rna	−	45682	45755	73
trnL-UAA	gene	translation-rna	+	46482	47051	569
trnF-GAA	gene	translation-rna	+	47341	47414	73
ndhJ	gene	nad-dehydrogenase	−	48060	48537	477
ndhK	gene	nad-dehydrogenase	−	48647	49325	678
ndhC	gene	nad-dehydrogenase	−	49376	49739	363
trnV-UAC	gene	translation-rna	−	50699	51348	649
trnM-CAU	gene	translation-rna	+	51528	51601	73
atpE	gene	atp-synthase	−	51811	52213	402
atpB	gene	atp-synthase	−	52209	53706	1497
rbcL	gene	other	+	54504	55938	1434
accD	gene	other	+	56630	58112	1482
psaI	gene	photosystem-i	+	58588	58699	111
ycf4	gene	other	+	59147	59702	555
cemA	gene	other	+	60369	61059	690
petA	gene	cytochrome	+	61280	62243	963
psbJ	gene	photosystem-ii	−	63274	63397	123
psbL	gene	photosystem-ii	−	63531	63648	117
psbF	gene	photosystem-ii	−	63671	63791	120
psbE	gene	photosystem-ii	−	63805	64057	252
petL	gene	cytochrome	+	64960	65056	96
petG	gene	cytochrome	+	65233	65347	114
trnW-CCA	gene	translation-rna	−	65470	65544	74
trnP-UGG	gene	translation-rna	−	65717	65791	74
psaJ	gene	photosystem-i	+	66076	66211	135
rpl33	gene	ribosomal-protein	+	66645	66846	201
rps18	gene	ribosomal-protein	+	67030	67336	306
rpl20	gene	ribosomal-protein	−	67556	67943	387
rps12	gene	ribosomal-protein	−	68752	96945	28193
rps12	gene	ribosomal-protein	+	68752	138635	69883
clpP	gene	other	−	68989	70910	1921
psbB	gene	photosystem-ii	+	71342	72869	1527
psbT	gene	photosystem-ii	+	73055	73163	108
psbN	gene	photosystem-ii	−	73223	73355	132
psbH	gene	photosystem-ii	+	73442	73682	240
petB	gene	cytochrome	+	73807	75186	1379
petD	gene	cytochrome	+	75373	76563	1190
rpoA	gene	rna-polymerase	−	76739	77747	1008
rps11	gene	ribosomal-protein	−	77818	78235	417
rpl36	gene	ribosomal-protein	−	78354	78468	114
infA	gene	other	−	78563	78803	240
rps8	gene	ribosomal-protein	−	78929	79334	405
rpl14	gene	ribosomal-protein	−	79520	79889	369
rpl16	gene	ribosomal-protein	−	80020	81304	1284
rps3	gene	ribosomal-protein	−	81458	82121	663
rpl22	gene	ribosomal-protein	−	82122	82578	456
rps19	gene	ribosomal-protein	−	82647	82926	279
rpl2	gene	ribosomal-protein	−	82986	84476	1490
rpl23	gene	ribosomal-protein	−	84494	84776	282
trnI-CAU	gene	translation-rna	−	84937	85011	74
ycf2	gene	other	+	85099	91918	6819
ycf15	gene	other	+	92059	92257	198
trnL-CAA	gene	translation-rna	−	92515	92596	81
ndhB	gene	nad-dehydrogenase	−	93158	95366	2208
rps7	gene	ribosomal-protein	−	95630	96098	468
trnV-GAC	gene	translation-rna	+	98582	98654	72
rrn16S	gene	ribosomal-rna	+	98880	100371	1491
trnI-GAU	gene	translation-rna	+	100669	101688	1019
trnA-UGC	gene	translation-rna	+	101757	102635	878
rrn23S	gene	ribosomal-rna	+	102800	105611	2811
rrn4.5S	gene	ribosomal-rna	+	105709	105979	270
rrn5S	gene	ribosomal-rna	+	106071	106193	122
trnR-ACG	gene	translation-rna	+	106436	106510	74
trnN-GUU	gene	translation-rna	−	107035	107107	72
ycf1	gene	other	+	107325	108567	1242
ndhF	gene	nad-dehydrogenase	−	108460	110692	2232
rpl32	gene	ribosomal-protein	+	111148	111319	171
trnL-UAG	gene	translation-rna	+	112072	112152	80
ccsA	gene	other	+	112252	113230	978
ndhD	gene	nad-dehydrogenase	−	113492	115022	1530
psaC	gene	photosystem-i	−	115113	115359	246
ndhE	gene	nad-dehydrogenase	−	115611	115917	306
ndhG	gene	nad-dehydrogenase	−	116146	116677	531
ndhI	gene	nad-dehydrogenase	−	117064	117571	507
ndhA	gene	nad-dehydrogenase	−	117651	119755	2104
ndhH	gene	nad-dehydrogenase	−	119756	120944	1188
rps15	gene	ribosomal-protein	−	121043	121316	273
ycf1	gene	other	−	121773	127350	5577
trnN-GUU	gene	translation-rna	+	127679	127751	72
trnR-ACG	gene	translation-rna	−	128276	128350	74
rrn5S	gene	ribosomal-rna	−	128593	128715	122
rrn4.5S	gene	ribosomal-rna	−	128807	129077	270
rrn23S	gene	ribosomal-rna	−	129175	131986	2811
trnA-UGC	gene	translation-rna	−	132151	133029	878
trnI-GAU	gene	translation-rna	−	133098	134117	1019
rrn16S	gene	ribosomal-rna	−	134415	135906	1491
trnV-GAC	gene	translation-rna	−	136132	136204	72
rps7	gene	ribosomal-protein	+	138688	139156	468
ndhB	gene	nad-dehydrogenase	+	139420	141628	2208
trnL-CAA	gene	translation-rna	+	142190	142271	81
ycf15	gene	other	−	142529	142727	198
ycf2	gene	other	−	142868	149687	6819
trnI-CAU	gene	translation-rna	+	149775	149849	74
rpl23	gene	ribosomal-protein	+	150010	150292	282
rpl2	gene	ribosomal-protein	+	150310	151800	1490

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomeNC_053706.1DNA · accDNC_053706DNA · atpBNC_053706DNA · matKNC_053706DNA · ndhFNC_053706DNA · psbANC_053706DNA · rbcLNC_053706DNA · rps12NC_053706DNA · ycf1NC_053706