Ajuga bracteosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_068635.1 · 4–78 bp · −
psbA · NC_068635.1 · 410–1,468 bp · −
trnK-UUU · NC_068635.1 · 1,701–4,263 bp · −
matK · NC_068635.1 · 1,960–3,522 bp · −
rps16 · NC_068635.1 · 5,157–6,313 bp · −
trnQ-UUG · NC_068635.1 · 7,135–7,206 bp · −
trnS-GCU · NC_068635.1 · 8,335–8,422 bp · −
atpA · NC_068635.1 · 10,237–11,760 bp · −
atpF · NC_068635.1 · 11,875–13,114 bp · −
atpH · NC_068635.1 · 13,472–13,717 bp · −
atpI · NC_068635.1 · 14,686–15,429 bp · −
rps2 · NC_068635.1 · 15,645–16,355 bp · −
rpoC2 · NC_068635.1 · 16,591–20,721 bp · −
rpoC1 · NC_068635.1 · 20,894–23,744 bp · −
rpoB · NC_068635.1 · 23,771–26,983 bp · −
psbM · NC_068635.1 · 29,164–29,268 bp · −
trnD-GUC · NC_068635.1 · 29,783–29,856 bp · −
trnY-GUA · NC_068635.1 · 29,956–30,039 bp · −
trnE-UUC · NC_068635.1 · 30,099–30,171 bp · −
trnS-UGA · NC_068635.1 · 34,636–34,728 bp · −
trnfM-CAU · NC_068635.1 · 35,759–35,832 bp · −
rps14 · NC_068635.1 · 35,977–36,279 bp · −
psaB · NC_068635.1 · 36,402–38,606 bp · −
psaA · NC_068635.1 · 38,632–40,884 bp · −
pafI · NC_068635.1 · 41,607–43,529 bp · −
rps4 · NC_068635.1 · 44,347–44,952 bp · −
trnT-UGU · NC_068635.1 · 45,294–45,366 bp · −
ndhJ · NC_068635.1 · 47,585–48,061 bp · −
ndhK · NC_068635.1 · 48,162–48,845 bp · −
ndhC · NC_068635.1 · 48,898–49,260 bp · −
trnV-UAC · NC_068635.1 · 50,095–50,761 bp · −
atpE · NC_068635.1 · 51,214–51,615 bp · −
atpB · NC_068635.1 · 51,612–53,108 bp · −
psbJ · NC_068635.1 · 62,495–62,617 bp · −
psbL · NC_068635.1 · 62,759–62,875 bp · −
psbF · NC_068635.1 · 62,899–63,018 bp · −
psbE · NC_068635.1 · 63,033–63,284 bp · −
trnW-CCA · NC_068635.1 · 64,672–64,745 bp · −
trnP-UGG · NC_068635.1 · 64,907–64,980 bp · −
rpl20 · NC_068635.1 · 66,823–67,209 bp · −
rps12 · NC_068635.1 · 68,049–68,162 bp · −
rps12 · NC_068635.1 · 95,302–96,098 bp · −
clpP1 · NC_068635.1 · 68,288–70,230 bp · −
pbf1 · NC_068635.1 · 72,558–72,689 bp · −
rpoA · NC_068635.1 · 76,063–77,076 bp · −
rps11 · NC_068635.1 · 77,148–77,564 bp · −
rpl36 · NC_068635.1 · 77,666–77,779 bp · −
infA · NC_068635.1 · 77,875–78,108 bp · −
rps8 · NC_068635.1 · 78,242–78,646 bp · −
rpl14 · NC_068635.1 · 78,817–79,185 bp · −
rpl16 · NC_068635.1 · 79,313–80,549 bp · −
rps3 · NC_068635.1 · 80,707–81,357 bp · −
rpl22 · NC_068635.1 · 81,342–81,809 bp · −
rps19 · NC_068635.1 · 81,864–82,142 bp · −
rpl2 · NC_068635.1 · 82,195–83,683 bp · −
rpl23 · NC_068635.1 · 83,702–83,983 bp · −
trnI-CAU · NC_068635.1 · 84,149–84,222 bp · −
trnL-CAA · NC_068635.1 · 91,664–91,744 bp · −
ndhB · NC_068635.1 · 92,293–94,505 bp · −
rps7 · NC_068635.1 · 94,781–95,248 bp · −
trnN-GUU · NC_068635.1 · 106,131–106,202 bp · −
ndhF · NC_068635.1 · 107,589–109,829 bp · −
ndhD · NC_068635.1 · 112,341–113,870 bp · −
psaC · NC_068635.1 · 113,963–114,208 bp · −
ndhE · NC_068635.1 · 114,466–114,771 bp · −
ndhG · NC_068635.1 · 115,005–115,535 bp · −
ndhI · NC_068635.1 · 115,873–116,379 bp · −
ndhA · NC_068635.1 · 116,455–118,527 bp · −
ndhH · NC_068635.1 · 118,529–119,710 bp · −
rps15 · NC_068635.1 · 119,807–120,079 bp · −
ycf1 · NC_068635.1 · 120,455–125,881 bp · −
trnR-ACG · NC_068635.1 · 126,854–126,927 bp · −
rrn5 · NC_068635.1 · 127,172–127,292 bp · −
rrn4.5 · NC_068635.1 · 127,522–127,624 bp · −
rrn23 · NC_068635.1 · 127,723–130,541 bp · −
trnA-UGC · NC_068635.1 · 130,703–131,579 bp · −
trnI-GAU · NC_068635.1 · 131,639–132,658 bp · −
rrn16 · NC_068635.1 · 132,957–134,447 bp · −
trnV-GAC · NC_068635.1 · 134,677–134,748 bp · −
ycf15 · NC_068635.1 · 141,029–141,277 bp · −
ycf2 · NC_068635.1 · 141,368–148,114 bp · −
psbK · NC_068635.1 · 7,544–7,729 bp · +
psbI · NC_068635.1 · 8,109–8,219 bp · +
trnG-UCC · NC_068635.1 · 9,123–9,883 bp · +
trnR-UCU · NC_068635.1 · 10,060–10,131 bp · +
trnC-GCA · NC_068635.1 · 28,157–28,227 bp · +
petN · NC_068635.1 · 28,535–28,624 bp · +
trnT-GGU · NC_068635.1 · 30,578–30,649 bp · +
psbD · NC_068635.1 · 31,951–33,012 bp · +
psbC · NC_068635.1 · 32,996–34,381 bp · +
psbZ · NC_068635.1 · 35,054–35,242 bp · +
trnG-GCC · NC_068635.1 · 35,510–35,580 bp · +
trnS-GGA · NC_068635.1 · 43,951–44,037 bp · +
trnL-UAA · NC_068635.1 · 46,003–46,568 bp · +
trnF-GAA · NC_068635.1 · 46,867–46,939 bp · +
trnM-CAU · NC_068635.1 · 50,942–51,014 bp · +
rbcL · NC_068635.1 · 53,910–55,358 bp · +
accD · NC_068635.1 · 56,081–57,556 bp · +
psaI · NC_068635.1 · 57,987–58,097 bp · +
pafII · NC_068635.1 · 58,509–59,063 bp · +
cemA · NC_068635.1 · 59,716–60,405 bp · +
petA · NC_068635.1 · 60,639–61,601 bp · +
petL · NC_068635.1 · 64,174–64,269 bp · +
petG · NC_068635.1 · 64,439–64,552 bp · +
psaJ · NC_068635.1 · 65,282–65,416 bp · +
rpl33 · NC_068635.1 · 65,888–66,088 bp · +
rps18 · NC_068635.1 · 66,269–66,574 bp · +
rps12 · NC_068635.1 · 136,327–137,123 bp · +
psbB · NC_068635.1 · 70,689–72,215 bp · +
psbT · NC_068635.1 · 72,391–72,492 bp · +
psbH · NC_068635.1 · 72,795–73,016 bp · +
petB · NC_068635.1 · 73,133–74,469 bp · +
petD · NC_068635.1 · 74,663–75,877 bp · +
ycf2 · NC_068635.1 · 84,311–91,057 bp · +
ycf15 · NC_068635.1 · 91,148–91,396 bp · +
trnV-GAC · NC_068635.1 · 97,677–97,748 bp · +
rrn16 · NC_068635.1 · 97,978–99,468 bp · +
trnI-GAU · NC_068635.1 · 99,767–100,786 bp · +
trnA-UGC · NC_068635.1 · 100,846–101,722 bp · +
rrn23 · NC_068635.1 · 101,884–104,702 bp · +
rrn4.5 · NC_068635.1 · 104,801–104,903 bp · +
rrn5 · NC_068635.1 · 105,133–105,253 bp · +
trnR-ACG · NC_068635.1 · 105,498–105,571 bp · +
ycf1 · NC_068635.1 · 106,544–107,698 bp · +
rpl32 · NC_068635.1 · 110,366–110,542 bp · +
trnL-UAG · NC_068635.1 · 110,942–111,021 bp · +
ccsA · NC_068635.1 · 111,115–112,086 bp · +
trnN-GUU · NC_068635.1 · 126,223–126,294 bp · +
rps7 · NC_068635.1 · 137,177–137,644 bp · +
ndhB · NC_068635.1 · 137,920–140,132 bp · +
trnL-CAA · NC_068635.1 · 140,681–140,761 bp · +
trnI-CAU · NC_068635.1 · 148,203–148,276 bp · +
rpl23 · NC_068635.1 · 148,442–148,723 bp · +
rpl2 · NC_068635.1 · 148,742–150,230 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Ajuga bracteosa
ANNOTATED PLASTOME
NC_068635.1
150,343 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37586 75172 112757 150343 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 78 75 Locate
psbA gene − 410 1468 1059 Locate
trnK-UUU gene − 1701 4263 2563 Locate
matK gene − 1960 3522 1563 Locate
rps16 gene − 5157 6313 1157 Locate
trnQ-UUG gene − 7135 7206 72 Locate
psbK gene + 7544 7729 186 Locate
psbI gene + 8109 8219 111 Locate
trnS-GCU gene − 8335 8422 88 Locate
trnG-UCC gene + 9123 9883 761 Locate
trnR-UCU gene + 10060 10131 72 Locate
atpA gene − 10237 11760 1524 Locate
atpF gene − 11875 13114 1240 Locate
atpH gene − 13472 13717 246 Locate
atpI gene − 14686 15429 744 Locate
rps2 gene − 15645 16355 711 Locate
rpoC2 gene − 16591 20721 4131 Locate
rpoC1 gene − 20894 23744 2851 Locate
rpoB gene − 23771 26983 3213 Locate
trnC-GCA gene + 28157 28227 71 Locate
petN gene + 28535 28624 90 Locate
psbM gene − 29164 29268 105 Locate
trnD-GUC gene − 29783 29856 74 Locate
trnY-GUA gene − 29956 30039 84 Locate
trnE-UUC gene − 30099 30171 73 Locate
trnT-GGU gene + 30578 30649 72 Locate
psbD gene + 31951 33012 1062 Locate
psbC gene + 32996 34381 1386 Locate
trnS-UGA gene − 34636 34728 93 Locate
psbZ gene + 35054 35242 189 Locate
trnG-GCC gene + 35510 35580 71 Locate
trnfM-CAU gene − 35759 35832 74 Locate
rps14 gene − 35977 36279 303 Locate
psaB gene − 36402 38606 2205 Locate
psaA gene − 38632 40884 2253 Locate
pafI gene − 41607 43529 1923 Locate
trnS-GGA gene + 43951 44037 87 Locate
rps4 gene − 44347 44952 606 Locate
trnT-UGU gene − 45294 45366 73 Locate
trnL-UAA gene + 46003 46568 566 Locate
trnF-GAA gene + 46867 46939 73 Locate
ndhJ gene − 47585 48061 477 Locate
ndhK gene − 48162 48845 684 Locate
ndhC gene − 48898 49260 363 Locate
trnV-UAC gene − 50095 50761 667 Locate
trnM-CAU gene + 50942 51014 73 Locate
atpE gene − 51214 51615 402 Locate
atpB gene − 51612 53108 1497 Locate
rbcL gene + 53910 55358 1449 Locate
accD gene + 56081 57556 1476 Locate
psaI gene + 57987 58097 111 Locate
pafII gene + 58509 59063 555 Locate
cemA gene + 59716 60405 690 Locate
petA gene + 60639 61601 963 Locate
psbJ gene − 62495 62617 123 Locate
psbL gene − 62759 62875 117 Locate
psbF gene − 62899 63018 120 Locate
psbE gene − 63033 63284 252 Locate
petL gene + 64174 64269 96 Locate
petG gene + 64439 64552 114 Locate
trnW-CCA gene − 64672 64745 74 Locate
trnP-UGG gene − 64907 64980 74 Locate
psaJ gene + 65282 65416 135 Locate
rpl33 gene + 65888 66088 201 Locate
rps18 gene + 66269 66574 306 Locate
rpl20 gene − 66823 67209 387 Locate
rps12 gene − 68049 68162 114 Locate
clpP1 gene − 68288 70230 1943 Locate
psbB gene + 70689 72215 1527 Locate
psbT gene + 72391 72492 102 Locate
pbf1 gene − 72558 72689 132 Locate
psbH gene + 72795 73016 222 Locate
petB gene + 73133 74469 1337 Locate
petD gene + 74663 75877 1215 Locate
rpoA gene − 76063 77076 1014 Locate
rps11 gene − 77148 77564 417 Locate
rpl36 gene − 77666 77779 114 Locate
infA gene − 77875 78108 234 Locate
rps8 gene − 78242 78646 405 Locate
rpl14 gene − 78817 79185 369 Locate
rpl16 gene − 79313 80549 1237 Locate
rps3 gene − 80707 81357 651 Locate
rpl22 gene − 81342 81809 468 Locate
rps19 gene − 81864 82142 279 Locate
rpl2 gene − 82195 83683 1489 Locate
rpl23 gene − 83702 83983 282 Locate
trnI-CAU gene − 84149 84222 74 Locate
ycf2 gene + 84311 91057 6747 Locate
ycf15 gene + 91148 91396 249 Locate
trnL-CAA gene − 91664 91744 81 Locate
ndhB gene − 92293 94505 2213 Locate
rps7 gene − 94781 95248 468 Locate
rps12 gene − 95302 96098 797 Locate
trnV-GAC gene + 97677 97748 72 Locate
rrn16 gene + 97978 99468 1491 Locate
trnI-GAU gene + 99767 100786 1020 Locate
trnA-UGC gene + 100846 101722 877 Locate
rrn23 gene + 101884 104702 2819 Locate
rrn4.5 gene + 104801 104903 103 Locate
rrn5 gene + 105133 105253 121 Locate
trnR-ACG gene + 105498 105571 74 Locate
trnN-GUU gene − 106131 106202 72 Locate
ycf1 gene + 106544 107698 1155 Locate
ndhF gene − 107589 109829 2241 Locate
rpl32 gene + 110366 110542 177 Locate
trnL-UAG gene + 110942 111021 80 Locate
ccsA gene + 111115 112086 972 Locate
ndhD gene − 112341 113870 1530 Locate
psaC gene − 113963 114208 246 Locate
ndhE gene − 114466 114771 306 Locate
ndhG gene − 115005 115535 531 Locate
ndhI gene − 115873 116379 507 Locate
ndhA gene − 116455 118527 2073 Locate
ndhH gene − 118529 119710 1182 Locate
rps15 gene − 119807 120079 273 Locate
ycf1 gene − 120455 125881 5427 Locate
trnN-GUU gene + 126223 126294 72 Locate
trnR-ACG gene − 126854 126927 74 Locate
rrn5 gene − 127172 127292 121 Locate
rrn4.5 gene − 127522 127624 103 Locate
rrn23 gene − 127723 130541 2819 Locate
trnA-UGC gene − 130703 131579 877 Locate
trnI-GAU gene − 131639 132658 1020 Locate
rrn16 gene − 132957 134447 1491 Locate
trnV-GAC gene − 134677 134748 72 Locate
rps12 gene + 136327 137123 797 Locate
rps7 gene + 137177 137644 468 Locate
ndhB gene + 137920 140132 2213 Locate
trnL-CAA gene + 140681 140761 81 Locate
ycf15 gene − 141029 141277 249 Locate
ycf2 gene − 141368 148114 6747 Locate
trnI-CAU gene + 148203 148276 74 Locate
rpl23 gene + 148442 148723 282 Locate
rpl2 gene + 148742 150230 1489 Locate
Status Available
Accession NC_068635.1
Length 150,343 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 16 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources