Ajuga campylantha chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_084165.1 · 4–77 bp · −
psbA · NC_084165.1 · 401–1,459 bp · −
trnK-UUU · NC_084165.1 · 1,692–4,266 bp · −
matK · NC_084165.1 · 1,965–3,527 bp · −
rps16 · NC_084165.1 · 5,166–6,308 bp · −
trnQ-UUG · NC_084165.1 · 7,130–7,201 bp · −
trnS-GCU · NC_084165.1 · 8,337–8,424 bp · −
atpA · NC_084165.1 · 10,227–11,750 bp · −
atpF · NC_084165.1 · 11,841–13,080 bp · −
atpH · NC_084165.1 · 13,438–13,683 bp · −
atpI · NC_084165.1 · 14,659–15,402 bp · −
rps2 · NC_084165.1 · 15,618–16,328 bp · −
rpoC2 · NC_084165.1 · 16,565–20,707 bp · −
rpoC1 · NC_084165.1 · 20,880–23,724 bp · −
rpoB · NC_084165.1 · 23,751–26,963 bp · −
psbM · NC_084165.1 · 29,153–29,257 bp · −
trnD-GUC · NC_084165.1 · 29,772–29,845 bp · −
trnY-GUA · NC_084165.1 · 29,945–30,028 bp · −
trnE-UUC · NC_084165.1 · 30,088–30,160 bp · −
trnS-UGA · NC_084165.1 · 34,704–34,796 bp · −
rps14 · NC_084165.1 · 36,044–36,346 bp · −
psaB · NC_084165.1 · 36,469–38,673 bp · −
psaA · NC_084165.1 · 38,699–40,951 bp · −
ycf3 · NC_084165.1 · 41,664–43,587 bp · −
rps4 · NC_084165.1 · 44,404–45,009 bp · −
trnT-UGU · NC_084165.1 · 45,357–45,429 bp · −
ndhJ · NC_084165.1 · 47,653–48,129 bp · −
ndhK · NC_084165.1 · 48,230–48,904 bp · −
ndhC · NC_084165.1 · 48,957–49,319 bp · −
trnV-UAC · NC_084165.1 · 50,160–50,825 bp · −
atpE · NC_084165.1 · 51,278–51,679 bp · −
atpB · NC_084165.1 · 51,676–53,172 bp · −
psbJ · NC_084165.1 · 62,596–62,718 bp · −
psbL · NC_084165.1 · 62,860–62,976 bp · −
psbF · NC_084165.1 · 63,000–63,119 bp · −
psbE · NC_084165.1 · 63,134–63,385 bp · −
trnW-CCA · NC_084165.1 · 64,770–64,843 bp · −
trnP-UGG · NC_084165.1 · 65,005–65,078 bp · −
rpl20 · NC_084165.1 · 66,905–67,291 bp · −
rps12 · NC_084165.1 · 68,141–68,254 bp · −
rps12 · NC_084165.1 · 95,391–96,187 bp · −
clpP · NC_084165.1 · 68,570–70,323 bp · −
psbN · NC_084165.1 · 72,648–72,779 bp · −
rpoA · NC_084165.1 · 76,146–77,159 bp · −
rps11 · NC_084165.1 · 77,230–77,646 bp · −
rpl36 · NC_084165.1 · 77,748–77,861 bp · −
infA · NC_084165.1 · 77,957–78,190 bp · −
rps8 · NC_084165.1 · 78,321–78,725 bp · −
rpl14 · NC_084165.1 · 78,893–79,261 bp · −
rpl16 · NC_084165.1 · 79,389–80,621 bp · −
rps3 · NC_084165.1 · 80,778–81,428 bp · −
rpl22 · NC_084165.1 · 81,413–81,880 bp · −
rps19 · NC_084165.1 · 81,935–82,213 bp · −
rpl2 · NC_084165.1 · 82,266–83,754 bp · −
rpl23 · NC_084165.1 · 83,773–84,054 bp · −
trnI-CAU · NC_084165.1 · 84,220–84,293 bp · −
trnL-CAA · NC_084165.1 · 91,753–91,833 bp · −
ndhB · NC_084165.1 · 92,382–94,594 bp · −
rps7 · NC_084165.1 · 94,870–95,337 bp · −
rrn16S · NC_084165.1 · 98,065–99,554 bp · −
trnN-GUU · NC_084165.1 · 106,226–106,297 bp · −
ndhF · NC_084165.1 · 107,643–109,919 bp · −
ndhD · NC_084165.1 · 112,432–113,931 bp · −
psaC · NC_084165.1 · 114,054–114,299 bp · −
ndhE · NC_084165.1 · 114,557–114,862 bp · −
ndhG · NC_084165.1 · 115,103–115,633 bp · −
ndhI · NC_084165.1 · 115,971–116,477 bp · −
ndhA · NC_084165.1 · 116,553–118,625 bp · −
ndhH · NC_084165.1 · 118,627–119,808 bp · −
rps15 · NC_084165.1 · 119,905–120,177 bp · −
ycf1 · NC_084165.1 · 120,553–125,967 bp · −
trnR-ACG · NC_084165.1 · 126,940–127,013 bp · −
rrn5S · NC_084165.1 · 127,266–127,386 bp · −
rrn4.5S · NC_084165.1 · 127,616–127,718 bp · −
rrn23S · NC_084165.1 · 127,718–130,635 bp · −
trnA-UGC · NC_084165.1 · 130,797–131,673 bp · −
trnI-GAU · NC_084165.1 · 131,733–132,752 bp · −
trnV-GAC · NC_084165.1 · 134,770–134,841 bp · −
ycf2 · NC_084165.1 · 141,460–148,224 bp · −
psbK · NC_084165.1 · 7,544–7,729 bp · +
psbI · NC_084165.1 · 8,110–8,220 bp · +
trnG-UCC · NC_084165.1 · 9,104–9,864 bp · +
trnR-UCU · NC_084165.1 · 10,050–10,121 bp · +
trnC-GCA · NC_084165.1 · 28,129–28,199 bp · +
petN · NC_084165.1 · 28,507–28,596 bp · +
trnT-GGU · NC_084165.1 · 30,567–30,638 bp · +
psbD · NC_084165.1 · 32,019–33,080 bp · +
psbC · NC_084165.1 · 33,028–34,449 bp · +
psbZ · NC_084165.1 · 35,122–35,310 bp · +
trnG-GCC · NC_084165.1 · 35,577–35,647 bp · +
trnS-GGA · NC_084165.1 · 44,008–44,094 bp · +
trnL-UAA · NC_084165.1 · 46,085–46,650 bp · +
trnM-CAU · NC_084165.1 · 51,006–51,078 bp · +
rbcL · NC_084165.1 · 53,969–55,417 bp · +
accD · NC_084165.1 · 56,084–57,619 bp · +
psaI · NC_084165.1 · 58,073–58,183 bp · +
ycf4 · NC_084165.1 · 58,595–59,149 bp · +
cemA · NC_084165.1 · 59,802–60,491 bp · +
petA · NC_084165.1 · 60,725–61,687 bp · +
petL · NC_084165.1 · 64,275–64,370 bp · +
petG · NC_084165.1 · 64,540–64,653 bp · +
psaJ · NC_084165.1 · 65,370–65,504 bp · +
rpl33 · NC_084165.1 · 65,972–66,172 bp · +
rps18 · NC_084165.1 · 66,353–66,658 bp · +
rps12 · NC_084165.1 · 136,419–137,215 bp · +
psbB · NC_084165.1 · 70,779–72,305 bp · +
psbT · NC_084165.1 · 72,481–72,582 bp · +
psbH · NC_084165.1 · 72,885–73,106 bp · +
petB · NC_084165.1 · 73,223–74,557 bp · +
petD · NC_084165.1 · 74,746–75,960 bp · +
ycf2 · NC_084165.1 · 84,382–91,146 bp · +
trnV-GAC · NC_084165.1 · 97,765–97,836 bp · +
trnI-GAU · NC_084165.1 · 99,854–100,873 bp · +
trnA-UGC · NC_084165.1 · 100,933–101,809 bp · +
rrn23S · NC_084165.1 · 101,971–104,888 bp · +
rrn4.5S · NC_084165.1 · 104,888–104,990 bp · +
rrn5S · NC_084165.1 · 105,220–105,340 bp · +
trnR-ACG · NC_084165.1 · 105,593–105,666 bp · +
ycf1 · NC_084165.1 · 106,639–107,745 bp · +
rpl32 · NC_084165.1 · 110,456–110,632 bp · +
trnL-UAG · NC_084165.1 · 111,032–111,111 bp · +
ccsA · NC_084165.1 · 111,205–112,176 bp · +
trnN-GUU · NC_084165.1 · 126,309–126,380 bp · +
rrn16S · NC_084165.1 · 133,052–134,541 bp · +
rps7 · NC_084165.1 · 137,269–137,736 bp · +
ndhB · NC_084165.1 · 138,012–140,224 bp · +
trnL-CAA · NC_084165.1 · 140,773–140,853 bp · +
trnI-CAU · NC_084165.1 · 148,313–148,386 bp · +
rpl23 · NC_084165.1 · 148,552–148,833 bp · +
rpl2 · NC_084165.1 · 148,852–150,340 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Ajuga campylantha
ANNOTATED PLASTOME
NC_084165.1
150,453 bp · 129 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37613 75226 112840 150453 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rrn16S rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 rrn16S trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
130 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 401 1459 1059 Locate
trnK-UUU gene − 1692 4266 2575 Locate
matK gene − 1965 3527 1563 Locate
rps16 gene − 5166 6308 1143 Locate
trnQ-UUG gene − 7130 7201 72 Locate
psbK gene + 7544 7729 186 Locate
psbI gene + 8110 8220 111 Locate
trnS-GCU gene − 8337 8424 88 Locate
trnG-UCC gene + 9104 9864 761 Locate
trnR-UCU gene + 10050 10121 72 Locate
atpA gene − 10227 11750 1524 Locate
atpF gene − 11841 13080 1240 Locate
atpH gene − 13438 13683 246 Locate
atpI gene − 14659 15402 744 Locate
rps2 gene − 15618 16328 711 Locate
rpoC2 gene − 16565 20707 4143 Locate
rpoC1 gene − 20880 23724 2845 Locate
rpoB gene − 23751 26963 3213 Locate
trnC-GCA gene + 28129 28199 71 Locate
petN gene + 28507 28596 90 Locate
psbM gene − 29153 29257 105 Locate
trnD-GUC gene − 29772 29845 74 Locate
trnY-GUA gene − 29945 30028 84 Locate
trnE-UUC gene − 30088 30160 73 Locate
trnT-GGU gene + 30567 30638 72 Locate
psbD gene + 32019 33080 1062 Locate
psbC gene + 33028 34449 1422 Locate
trnS-UGA gene − 34704 34796 93 Locate
psbZ gene + 35122 35310 189 Locate
trnG-GCC gene + 35577 35647 71 Locate
rps14 gene − 36044 36346 303 Locate
psaB gene − 36469 38673 2205 Locate
psaA gene − 38699 40951 2253 Locate
ycf3 gene − 41664 43587 1924 Locate
trnS-GGA gene + 44008 44094 87 Locate
rps4 gene − 44404 45009 606 Locate
trnT-UGU gene − 45357 45429 73 Locate
trnL-UAA gene + 46085 46650 566 Locate
ndhJ gene − 47653 48129 477 Locate
ndhK gene − 48230 48904 675 Locate
ndhC gene − 48957 49319 363 Locate
trnV-UAC gene − 50160 50825 666 Locate
trnM-CAU gene + 51006 51078 73 Locate
atpE gene − 51278 51679 402 Locate
atpB gene − 51676 53172 1497 Locate
rbcL gene + 53969 55417 1449 Locate
accD gene + 56084 57619 1536 Locate
psaI gene + 58073 58183 111 Locate
ycf4 gene + 58595 59149 555 Locate
cemA gene + 59802 60491 690 Locate
petA gene + 60725 61687 963 Locate
psbJ gene − 62596 62718 123 Locate
psbL gene − 62860 62976 117 Locate
psbF gene − 63000 63119 120 Locate
psbE gene − 63134 63385 252 Locate
petL gene + 64275 64370 96 Locate
petG gene + 64540 64653 114 Locate
trnW-CCA gene − 64770 64843 74 Locate
trnP-UGG gene − 65005 65078 74 Locate
psaJ gene + 65370 65504 135 Locate
rpl33 gene + 65972 66172 201 Locate
rps18 gene + 66353 66658 306 Locate
rpl20 gene − 66905 67291 387 Locate
rps12 gene − 68141 68254 114 Locate
clpP gene − 68570 70323 1754 Locate
psbB gene + 70779 72305 1527 Locate
psbT gene + 72481 72582 102 Locate
psbN gene − 72648 72779 132 Locate
psbH gene + 72885 73106 222 Locate
petB gene + 73223 74557 1335 Locate
petD gene + 74746 75960 1215 Locate
rpoA gene − 76146 77159 1014 Locate
rps11 gene − 77230 77646 417 Locate
rpl36 gene − 77748 77861 114 Locate
infA gene − 77957 78190 234 Locate
rps8 gene − 78321 78725 405 Locate
rpl14 gene − 78893 79261 369 Locate
rpl16 gene − 79389 80621 1233 Locate
rps3 gene − 80778 81428 651 Locate
rpl22 gene − 81413 81880 468 Locate
rps19 gene − 81935 82213 279 Locate
rpl2 gene − 82266 83754 1489 Locate
rpl23 gene − 83773 84054 282 Locate
trnI-CAU gene − 84220 84293 74 Locate
ycf2 gene + 84382 91146 6765 Locate
trnL-CAA gene − 91753 91833 81 Locate
ndhB gene − 92382 94594 2213 Locate
rps7 gene − 94870 95337 468 Locate
rps12 gene − 95391 96187 797 Locate
trnV-GAC gene + 97765 97836 72 Locate
rrn16S gene − 98065 99554 1490 Locate
trnI-GAU gene + 99854 100873 1020 Locate
trnA-UGC gene + 100933 101809 877 Locate
rrn23S gene + 101971 104888 2918 Locate
rrn4.5S gene + 104888 104990 103 Locate
rrn5S gene + 105220 105340 121 Locate
trnR-ACG gene + 105593 105666 74 Locate
trnN-GUU gene − 106226 106297 72 Locate
ycf1 gene + 106639 107745 1107 Locate
ndhF gene − 107643 109919 2277 Locate
rpl32 gene + 110456 110632 177 Locate
trnL-UAG gene + 111032 111111 80 Locate
ccsA gene + 111205 112176 972 Locate
ndhD gene − 112432 113931 1500 Locate
psaC gene − 114054 114299 246 Locate
ndhE gene − 114557 114862 306 Locate
ndhG gene − 115103 115633 531 Locate
ndhI gene − 115971 116477 507 Locate
ndhA gene − 116553 118625 2073 Locate
ndhH gene − 118627 119808 1182 Locate
rps15 gene − 119905 120177 273 Locate
ycf1 gene − 120553 125967 5415 Locate
trnN-GUU gene + 126309 126380 72 Locate
trnR-ACG gene − 126940 127013 74 Locate
rrn5S gene − 127266 127386 121 Locate
rrn4.5S gene − 127616 127718 103 Locate
rrn23S gene − 127718 130635 2918 Locate
trnA-UGC gene − 130797 131673 877 Locate
trnI-GAU gene − 131733 132752 1020 Locate
rrn16S gene + 133052 134541 1490 Locate
trnV-GAC gene − 134770 134841 72 Locate
rps12 gene + 136419 137215 797 Locate
rps7 gene + 137269 137736 468 Locate
ndhB gene + 138012 140224 2213 Locate
trnL-CAA gene + 140773 140853 81 Locate
ycf2 gene − 141460 148224 6765 Locate
trnI-CAU gene + 148313 148386 74 Locate
rpl23 gene + 148552 148833 282 Locate
rpl2 gene + 148852 150340 1489 Locate
Status Available
Accession NC_084165.1
Length 150,453 bp
GC content 38.3%
Annotated genes 129
Gene sequence records 8
Translation Rna 35 Photosystem Ii 15 Other 13 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources