Coordinate-aware organelle record

Ajuga nipponensis chloroplast genome

Available NC_084167.1 150,442 bp 133 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

133 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	3	78	75
psbA	gene	photosystem-ii	−	401	1460	1059
trnK-UUU	gene	translation-rna	−	1692	4262	2570
matK	gene	other	−	1958	3521	1563
rps16	gene	ribosomal-protein	−	5162	6292	1130
trnQ-UUG	gene	translation-rna	−	7113	7185	72
psbK	gene	photosystem-ii	+	7514	7700	186
psbI	gene	photosystem-ii	+	8080	8191	111
trnS-GCU	gene	translation-rna	−	8304	8392	88
trnG-UCC	gene	translation-rna	+	9068	9829	761
trnR-UCU	gene	translation-rna	+	10014	10086	72
atpA	gene	atp-synthase	−	10191	11715	1524
atpF	gene	atp-synthase	−	11828	13069	1241
atpH	gene	atp-synthase	−	13408	13654	246
atpI	gene	atp-synthase	−	14620	15364	744
rps2	gene	ribosomal-protein	−	15579	16290	711
rpoC2	gene	rna-polymerase	−	16592	20678	4086
rpoC1	gene	rna-polymerase	−	20838	23684	2846
rpoB	gene	rna-polymerase	−	23710	26923	3213
trnC-GCA	gene	translation-rna	+	28077	28148	71
petN	gene	cytochrome	+	28450	28540	90
psbM	gene	photosystem-ii	−	29095	29200	105
trnD-GUC	gene	translation-rna	−	29714	29788	74
trnY-GUA	gene	translation-rna	−	29887	29971	84
trnE-UUC	gene	translation-rna	−	30031	30104	73
trnT-GGU	gene	translation-rna	+	30510	30582	72
psbD	gene	photosystem-ii	+	31962	33024	1062
psbC	gene	photosystem-ii	+	32971	34393	1422
trnS-UGA	gene	translation-rna	−	34647	34740	93
psbZ	gene	photosystem-ii	+	35065	35254	189
trnG-GCC	gene	translation-rna	+	35522	35593	71
trnfM-CAU	gene	translation-rna	−	35771	35845	74
rps14	gene	ribosomal-protein	−	35989	36292	303
psaB	gene	photosystem-i	−	36414	38619	2205
psaA	gene	photosystem-i	−	38644	40897	2253
ycf3	gene	other	−	41618	43542	1924
trnS-GGA	gene	translation-rna	+	43962	44049	87
rps4	gene	ribosomal-protein	−	44358	44964	606
trnT-UGU	gene	translation-rna	−	45299	45372	73
trnL-UAA	gene	translation-rna	+	46026	46594	568
trnF-GAA	gene	translation-rna	+	46892	46965	73
ndhJ	gene	nad-dehydrogenase	−	47604	48081	477
ndhK	gene	nad-dehydrogenase	−	48181	48856	675
ndhC	gene	nad-dehydrogenase	−	48908	49271	363
trnV-UAC	gene	translation-rna	−	50110	50778	668
trnM-CAU	gene	translation-rna	+	50958	51031	73
atpE	gene	atp-synthase	−	51236	51638	402
atpB	gene	atp-synthase	−	51634	53131	1497
rbcL	gene	other	+	53931	55380	1449
accD	gene	other	+	56109	57585	1476
psaI	gene	photosystem-i	+	58039	58150	111
ycf4	gene	other	+	58563	59118	555
cemA	gene	other	+	59770	60460	690
petA	gene	cytochrome	+	60675	61638	963
psbJ	gene	photosystem-ii	−	62541	62664	123
psbL	gene	photosystem-ii	−	62805	62922	117
psbF	gene	photosystem-ii	−	62945	63065	120
psbE	gene	photosystem-ii	−	63079	63331	252
petL	gene	cytochrome	+	64220	64316	96
petG	gene	cytochrome	+	64495	64609	114
trnW-CCA	gene	translation-rna	−	64731	64805	74
trnP-UGG	gene	translation-rna	−	64966	65040	74
psaJ	gene	photosystem-i	+	65343	65478	135
rpl33	gene	ribosomal-protein	+	65950	66151	201
rps18	gene	ribosomal-protein	+	66331	66637	306
rpl20	gene	ribosomal-protein	−	66885	67272	387
rps12	gene	ribosomal-protein	−	68105	96156	28051
rps12	gene	ribosomal-protein	+	68105	137204	69099
clpP	gene	other	−	68344	70288	1944
psbB	gene	photosystem-ii	+	70745	72272	1527
psbT	gene	photosystem-ii	+	72447	72549	102
psbN	gene	photosystem-ii	−	72614	72746	132
psbH	gene	photosystem-ii	+	72851	73073	222
petB	gene	cytochrome	+	73189	74522	1333
petD	gene	cytochrome	+	74715	75930	1215
rpoA	gene	rna-polymerase	−	76115	77129	1014
rps11	gene	ribosomal-protein	−	77199	77616	417
rpl36	gene	ribosomal-protein	−	77717	77831	114
infA	gene	other	−	77926	78160	234
rps8	gene	ribosomal-protein	−	78290	78695	405
rpl14	gene	ribosomal-protein	−	78862	79231	369
rpl16	gene	ribosomal-protein	−	79358	80590	1232
rps3	gene	ribosomal-protein	−	80746	81397	651
rpl22	gene	ribosomal-protein	−	81381	81849	468
rps19	gene	ribosomal-protein	−	81903	82182	279
rpl2	gene	ribosomal-protein	−	82234	83723	1489
rpl23	gene	ribosomal-protein	−	83741	84023	282
trnI-CAU	gene	translation-rna	−	84188	84262	74
ycf2	gene	other	+	84350	91115	6765
ycf15	gene	other	+	91256	91454	198
trnL-CAA	gene	translation-rna	−	91721	91802	81
ndhB	gene	nad-dehydrogenase	−	92350	94563	2213
rps7	gene	ribosomal-protein	−	94838	95306	468
trnV-GAC	gene	translation-rna	+	97733	97805	72
rrn16S	gene	ribosomal-rna	+	98034	99524	1490
trnI-GAU	gene	translation-rna	+	99822	100843	1021
trnA-UGC	gene	translation-rna	+	100902	101779	877
rrn23S	gene	ribosomal-rna	+	101949	104759	2810
rrn4.5S	gene	ribosomal-rna	+	104857	104960	103
rrn5S	gene	ribosomal-rna	+	105189	105310	121
trnR-ACG	gene	translation-rna	+	105562	105636	74
trnN-GUU	gene	translation-rna	−	106195	106267	72
ycf1	gene	other	+	106608	107763	1155
ndhF	gene	nad-dehydrogenase	−	107653	109894	2241
rpl32	gene	ribosomal-protein	+	110430	110607	177
trnL-UAG	gene	translation-rna	+	111007	111087	80
ccsA	gene	other	+	111173	112145	972
ndhD	gene	nad-dehydrogenase	−	112400	113930	1530
psaC	gene	photosystem-i	−	114023	114269	246
ndhE	gene	nad-dehydrogenase	−	114526	114832	306
ndhG	gene	nad-dehydrogenase	−	115065	115596	531
ndhI	gene	nad-dehydrogenase	−	115933	116440	507
ndhA	gene	nad-dehydrogenase	−	116515	118589	2074
ndhH	gene	nad-dehydrogenase	−	118590	119772	1182
rps15	gene	ribosomal-protein	−	119868	120141	273
ycf1	gene	other	−	120516	125955	5439
trnN-GUU	gene	translation-rna	+	126296	126368	72
trnR-ACG	gene	translation-rna	−	126927	127001	74
rrn5S	gene	ribosomal-rna	−	127253	127374	121
rrn4.5S	gene	ribosomal-rna	−	127603	127706	103
rrn23S	gene	ribosomal-rna	−	127804	130614	2810
trnA-UGC	gene	translation-rna	−	130784	131661	877
trnI-GAU	gene	translation-rna	−	131720	132741	1021
rrn16S	gene	ribosomal-rna	−	133039	134529	1490
trnV-GAC	gene	translation-rna	−	134758	134830	72
rps7	gene	ribosomal-protein	+	137257	137725	468
ndhB	gene	nad-dehydrogenase	+	138000	140213	2213
trnL-CAA	gene	translation-rna	+	140761	140842	81
ycf15	gene	other	−	141109	141307	198
ycf2	gene	other	−	141448	148213	6765
trnI-CAU	gene	translation-rna	+	148301	148375	74
rpl23	gene	ribosomal-protein	+	148540	148822	282
rpl2	gene	ribosomal-protein	+	148840	150329	1489

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomeNC_084167.1DNA · accDNC_084167DNA · atpBNC_084167DNA · matKNC_084167DNA · ndhFNC_084167DNA · psbANC_084167DNA · rbcLNC_084167DNA · rps12NC_084167DNA · ycf1NC_084167