Ajuga nipponensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_084167.1 · 4–78 bp · −
psbA · NC_084167.1 · 402–1,460 bp · −
trnK-UUU · NC_084167.1 · 1,693–4,262 bp · −
matK · NC_084167.1 · 1,959–3,521 bp · −
rps16 · NC_084167.1 · 5,163–6,292 bp · −
trnQ-UUG · NC_084167.1 · 7,114–7,185 bp · −
trnS-GCU · NC_084167.1 · 8,305–8,392 bp · −
atpA · NC_084167.1 · 10,192–11,715 bp · −
atpF · NC_084167.1 · 11,829–13,069 bp · −
atpH · NC_084167.1 · 13,409–13,654 bp · −
atpI · NC_084167.1 · 14,621–15,364 bp · −
rps2 · NC_084167.1 · 15,580–16,290 bp · −
rpoC2 · NC_084167.1 · 16,593–20,678 bp · −
rpoC1 · NC_084167.1 · 20,839–23,684 bp · −
rpoB · NC_084167.1 · 23,711–26,923 bp · −
psbM · NC_084167.1 · 29,096–29,200 bp · −
trnD-GUC · NC_084167.1 · 29,715–29,788 bp · −
trnY-GUA · NC_084167.1 · 29,888–29,971 bp · −
trnE-UUC · NC_084167.1 · 30,032–30,104 bp · −
trnS-UGA · NC_084167.1 · 34,648–34,740 bp · −
trnfM-CAU · NC_084167.1 · 35,772–35,845 bp · −
rps14 · NC_084167.1 · 35,990–36,292 bp · −
psaB · NC_084167.1 · 36,415–38,619 bp · −
psaA · NC_084167.1 · 38,645–40,897 bp · −
ycf3 · NC_084167.1 · 41,619–43,542 bp · −
rps4 · NC_084167.1 · 44,359–44,964 bp · −
trnT-UGU · NC_084167.1 · 45,300–45,372 bp · −
ndhJ · NC_084167.1 · 47,605–48,081 bp · −
ndhK · NC_084167.1 · 48,182–48,856 bp · −
ndhC · NC_084167.1 · 48,909–49,271 bp · −
trnV-UAC · NC_084167.1 · 50,111–50,778 bp · −
atpE · NC_084167.1 · 51,237–51,638 bp · −
atpB · NC_084167.1 · 51,635–53,131 bp · −
psbJ · NC_084167.1 · 62,542–62,664 bp · −
psbL · NC_084167.1 · 62,806–62,922 bp · −
psbF · NC_084167.1 · 62,946–63,065 bp · −
psbE · NC_084167.1 · 63,080–63,331 bp · −
trnW-CCA · NC_084167.1 · 64,732–64,805 bp · −
trnP-UGG · NC_084167.1 · 64,967–65,040 bp · −
rpl20 · NC_084167.1 · 66,886–67,272 bp · −
rps12 · NC_084167.1 · 68,106–68,219 bp · −
rps12 · NC_084167.1 · 95,360–96,156 bp · −
clpP · NC_084167.1 · 68,345–70,288 bp · −
psbN · NC_084167.1 · 72,615–72,746 bp · −
rpoA · NC_084167.1 · 76,116–77,129 bp · −
rps11 · NC_084167.1 · 77,200–77,616 bp · −
rpl36 · NC_084167.1 · 77,718–77,831 bp · −
infA · NC_084167.1 · 77,927–78,160 bp · −
rps8 · NC_084167.1 · 78,291–78,695 bp · −
rpl14 · NC_084167.1 · 78,863–79,231 bp · −
rpl16 · NC_084167.1 · 79,359–80,590 bp · −
rps3 · NC_084167.1 · 80,747–81,397 bp · −
rpl22 · NC_084167.1 · 81,382–81,849 bp · −
rps19 · NC_084167.1 · 81,904–82,182 bp · −
rpl2 · NC_084167.1 · 82,235–83,723 bp · −
rpl23 · NC_084167.1 · 83,742–84,023 bp · −
trnI-CAU · NC_084167.1 · 84,189–84,262 bp · −
trnL-CAA · NC_084167.1 · 91,722–91,802 bp · −
ndhB · NC_084167.1 · 92,351–94,563 bp · −
rps7 · NC_084167.1 · 94,839–95,306 bp · −
trnN-GUU · NC_084167.1 · 106,196–106,267 bp · −
ndhF · NC_084167.1 · 107,654–109,894 bp · −
ndhD · NC_084167.1 · 112,401–113,930 bp · −
psaC · NC_084167.1 · 114,024–114,269 bp · −
ndhE · NC_084167.1 · 114,527–114,832 bp · −
ndhG · NC_084167.1 · 115,066–115,596 bp · −
ndhI · NC_084167.1 · 115,934–116,440 bp · −
ndhA · NC_084167.1 · 116,516–118,589 bp · −
ndhH · NC_084167.1 · 118,591–119,772 bp · −
rps15 · NC_084167.1 · 119,869–120,141 bp · −
ycf1 · NC_084167.1 · 120,517–125,955 bp · −
trnR-ACG · NC_084167.1 · 126,928–127,001 bp · −
rrn5S · NC_084167.1 · 127,254–127,374 bp · −
rrn4.5S · NC_084167.1 · 127,604–127,706 bp · −
rrn23S · NC_084167.1 · 127,805–130,614 bp · −
trnA-UGC · NC_084167.1 · 130,785–131,661 bp · −
trnI-GAU · NC_084167.1 · 131,721–132,741 bp · −
rrn16S · NC_084167.1 · 133,040–134,529 bp · −
trnV-GAC · NC_084167.1 · 134,759–134,830 bp · −
ycf15 · NC_084167.1 · 141,110–141,307 bp · −
ycf2 · NC_084167.1 · 141,449–148,213 bp · −
psbK · NC_084167.1 · 7,515–7,700 bp · +
psbI · NC_084167.1 · 8,081–8,191 bp · +
trnG-UCC · NC_084167.1 · 9,069–9,829 bp · +
trnR-UCU · NC_084167.1 · 10,015–10,086 bp · +
trnC-GCA · NC_084167.1 · 28,078–28,148 bp · +
petN · NC_084167.1 · 28,451–28,540 bp · +
trnT-GGU · NC_084167.1 · 30,511–30,582 bp · +
psbD · NC_084167.1 · 31,963–33,024 bp · +
psbC · NC_084167.1 · 32,972–34,393 bp · +
psbZ · NC_084167.1 · 35,066–35,254 bp · +
trnG-GCC · NC_084167.1 · 35,523–35,593 bp · +
trnS-GGA · NC_084167.1 · 43,963–44,049 bp · +
trnL-UAA · NC_084167.1 · 46,027–46,594 bp · +
trnF-GAA · NC_084167.1 · 46,893–46,965 bp · +
trnM-CAU · NC_084167.1 · 50,959–51,031 bp · +
rbcL · NC_084167.1 · 53,932–55,380 bp · +
accD · NC_084167.1 · 56,110–57,585 bp · +
psaI · NC_084167.1 · 58,040–58,150 bp · +
ycf4 · NC_084167.1 · 58,564–59,118 bp · +
cemA · NC_084167.1 · 59,771–60,460 bp · +
petA · NC_084167.1 · 60,676–61,638 bp · +
petL · NC_084167.1 · 64,221–64,316 bp · +
petG · NC_084167.1 · 64,496–64,609 bp · +
psaJ · NC_084167.1 · 65,344–65,478 bp · +
rpl33 · NC_084167.1 · 65,951–66,151 bp · +
rps18 · NC_084167.1 · 66,332–66,637 bp · +
rps12 · NC_084167.1 · 136,408–137,204 bp · +
psbB · NC_084167.1 · 70,746–72,272 bp · +
psbT · NC_084167.1 · 72,448–72,549 bp · +
psbH · NC_084167.1 · 72,852–73,073 bp · +
petB · NC_084167.1 · 73,190–74,522 bp · +
petD · NC_084167.1 · 74,716–75,930 bp · +
ycf2 · NC_084167.1 · 84,351–91,115 bp · +
ycf15 · NC_084167.1 · 91,257–91,454 bp · +
trnV-GAC · NC_084167.1 · 97,734–97,805 bp · +
rrn16S · NC_084167.1 · 98,035–99,524 bp · +
trnI-GAU · NC_084167.1 · 99,823–100,843 bp · +
trnA-UGC · NC_084167.1 · 100,903–101,779 bp · +
rrn23S · NC_084167.1 · 101,950–104,759 bp · +
rrn4.5S · NC_084167.1 · 104,858–104,960 bp · +
rrn5S · NC_084167.1 · 105,190–105,310 bp · +
trnR-ACG · NC_084167.1 · 105,563–105,636 bp · +
ycf1 · NC_084167.1 · 106,609–107,763 bp · +
rpl32 · NC_084167.1 · 110,431–110,607 bp · +
trnL-UAG · NC_084167.1 · 111,008–111,087 bp · +
ccsA · NC_084167.1 · 111,174–112,145 bp · +
trnN-GUU · NC_084167.1 · 126,297–126,368 bp · +
rps7 · NC_084167.1 · 137,258–137,725 bp · +
ndhB · NC_084167.1 · 138,001–140,213 bp · +
trnL-CAA · NC_084167.1 · 140,762–140,842 bp · +
trnI-CAU · NC_084167.1 · 148,302–148,375 bp · +
rpl23 · NC_084167.1 · 148,541–148,822 bp · +
rpl2 · NC_084167.1 · 148,841–150,329 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Ajuga nipponensis
ANNOTATED PLASTOME
NC_084167.1
150,442 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37610 75221 112832 150442 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 78 75 Locate
psbA gene − 402 1460 1059 Locate
trnK-UUU gene − 1693 4262 2570 Locate
matK gene − 1959 3521 1563 Locate
rps16 gene − 5163 6292 1130 Locate
trnQ-UUG gene − 7114 7185 72 Locate
psbK gene + 7515 7700 186 Locate
psbI gene + 8081 8191 111 Locate
trnS-GCU gene − 8305 8392 88 Locate
trnG-UCC gene + 9069 9829 761 Locate
trnR-UCU gene + 10015 10086 72 Locate
atpA gene − 10192 11715 1524 Locate
atpF gene − 11829 13069 1241 Locate
atpH gene − 13409 13654 246 Locate
atpI gene − 14621 15364 744 Locate
rps2 gene − 15580 16290 711 Locate
rpoC2 gene − 16593 20678 4086 Locate
rpoC1 gene − 20839 23684 2846 Locate
rpoB gene − 23711 26923 3213 Locate
trnC-GCA gene + 28078 28148 71 Locate
petN gene + 28451 28540 90 Locate
psbM gene − 29096 29200 105 Locate
trnD-GUC gene − 29715 29788 74 Locate
trnY-GUA gene − 29888 29971 84 Locate
trnE-UUC gene − 30032 30104 73 Locate
trnT-GGU gene + 30511 30582 72 Locate
psbD gene + 31963 33024 1062 Locate
psbC gene + 32972 34393 1422 Locate
trnS-UGA gene − 34648 34740 93 Locate
psbZ gene + 35066 35254 189 Locate
trnG-GCC gene + 35523 35593 71 Locate
trnfM-CAU gene − 35772 35845 74 Locate
rps14 gene − 35990 36292 303 Locate
psaB gene − 36415 38619 2205 Locate
psaA gene − 38645 40897 2253 Locate
ycf3 gene − 41619 43542 1924 Locate
trnS-GGA gene + 43963 44049 87 Locate
rps4 gene − 44359 44964 606 Locate
trnT-UGU gene − 45300 45372 73 Locate
trnL-UAA gene + 46027 46594 568 Locate
trnF-GAA gene + 46893 46965 73 Locate
ndhJ gene − 47605 48081 477 Locate
ndhK gene − 48182 48856 675 Locate
ndhC gene − 48909 49271 363 Locate
trnV-UAC gene − 50111 50778 668 Locate
trnM-CAU gene + 50959 51031 73 Locate
atpE gene − 51237 51638 402 Locate
atpB gene − 51635 53131 1497 Locate
rbcL gene + 53932 55380 1449 Locate
accD gene + 56110 57585 1476 Locate
psaI gene + 58040 58150 111 Locate
ycf4 gene + 58564 59118 555 Locate
cemA gene + 59771 60460 690 Locate
petA gene + 60676 61638 963 Locate
psbJ gene − 62542 62664 123 Locate
psbL gene − 62806 62922 117 Locate
psbF gene − 62946 63065 120 Locate
psbE gene − 63080 63331 252 Locate
petL gene + 64221 64316 96 Locate
petG gene + 64496 64609 114 Locate
trnW-CCA gene − 64732 64805 74 Locate
trnP-UGG gene − 64967 65040 74 Locate
psaJ gene + 65344 65478 135 Locate
rpl33 gene + 65951 66151 201 Locate
rps18 gene + 66332 66637 306 Locate
rpl20 gene − 66886 67272 387 Locate
rps12 gene − 68106 68219 114 Locate
clpP gene − 68345 70288 1944 Locate
psbB gene + 70746 72272 1527 Locate
psbT gene + 72448 72549 102 Locate
psbN gene − 72615 72746 132 Locate
psbH gene + 72852 73073 222 Locate
petB gene + 73190 74522 1333 Locate
petD gene + 74716 75930 1215 Locate
rpoA gene − 76116 77129 1014 Locate
rps11 gene − 77200 77616 417 Locate
rpl36 gene − 77718 77831 114 Locate
infA gene − 77927 78160 234 Locate
rps8 gene − 78291 78695 405 Locate
rpl14 gene − 78863 79231 369 Locate
rpl16 gene − 79359 80590 1232 Locate
rps3 gene − 80747 81397 651 Locate
rpl22 gene − 81382 81849 468 Locate
rps19 gene − 81904 82182 279 Locate
rpl2 gene − 82235 83723 1489 Locate
rpl23 gene − 83742 84023 282 Locate
trnI-CAU gene − 84189 84262 74 Locate
ycf2 gene + 84351 91115 6765 Locate
ycf15 gene + 91257 91454 198 Locate
trnL-CAA gene − 91722 91802 81 Locate
ndhB gene − 92351 94563 2213 Locate
rps7 gene − 94839 95306 468 Locate
rps12 gene − 95360 96156 797 Locate
trnV-GAC gene + 97734 97805 72 Locate
rrn16S gene + 98035 99524 1490 Locate
trnI-GAU gene + 99823 100843 1021 Locate
trnA-UGC gene + 100903 101779 877 Locate
rrn23S gene + 101950 104759 2810 Locate
rrn4.5S gene + 104858 104960 103 Locate
rrn5S gene + 105190 105310 121 Locate
trnR-ACG gene + 105563 105636 74 Locate
trnN-GUU gene − 106196 106267 72 Locate
ycf1 gene + 106609 107763 1155 Locate
ndhF gene − 107654 109894 2241 Locate
rpl32 gene + 110431 110607 177 Locate
trnL-UAG gene + 111008 111087 80 Locate
ccsA gene + 111174 112145 972 Locate
ndhD gene − 112401 113930 1530 Locate
psaC gene − 114024 114269 246 Locate
ndhE gene − 114527 114832 306 Locate
ndhG gene − 115066 115596 531 Locate
ndhI gene − 115934 116440 507 Locate
ndhA gene − 116516 118589 2074 Locate
ndhH gene − 118591 119772 1182 Locate
rps15 gene − 119869 120141 273 Locate
ycf1 gene − 120517 125955 5439 Locate
trnN-GUU gene + 126297 126368 72 Locate
trnR-ACG gene − 126928 127001 74 Locate
rrn5S gene − 127254 127374 121 Locate
rrn4.5S gene − 127604 127706 103 Locate
rrn23S gene − 127805 130614 2810 Locate
trnA-UGC gene − 130785 131661 877 Locate
trnI-GAU gene − 131721 132741 1021 Locate
rrn16S gene − 133040 134529 1490 Locate
trnV-GAC gene − 134759 134830 72 Locate
rps12 gene + 136408 137204 797 Locate
rps7 gene + 137258 137725 468 Locate
ndhB gene + 138001 140213 2213 Locate
trnL-CAA gene + 140762 140842 81 Locate
ycf15 gene − 141110 141307 198 Locate
ycf2 gene − 141449 148213 6765 Locate
trnI-CAU gene + 148302 148375 74 Locate
rpl23 gene + 148541 148822 282 Locate
rpl2 gene + 148841 150329 1489 Locate
Status Available
Accession NC_084167.1
Length 150,442 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources