Ajuga ovalifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_084168.1 · 4–78 bp · −
psbA · NC_084168.1 · 402–1,460 bp · −
trnK-UUU · NC_084168.1 · 1,693–4,262 bp · −
matK · NC_084168.1 · 1,959–3,521 bp · −
rps16 · NC_084168.1 · 5,156–6,299 bp · −
trnQ-UUG · NC_084168.1 · 7,121–7,192 bp · −
trnS-GCU · NC_084168.1 · 8,322–8,409 bp · −
atpA · NC_084168.1 · 10,212–11,735 bp · −
atpF · NC_084168.1 · 11,851–13,096 bp · −
atpH · NC_084168.1 · 13,454–13,699 bp · −
atpI · NC_084168.1 · 14,676–15,419 bp · −
rps2 · NC_084168.1 · 15,654–16,364 bp · −
rpoC2 · NC_084168.1 · 16,663–20,748 bp · −
rpoC1 · NC_084168.1 · 20,909–23,758 bp · −
rpoB · NC_084168.1 · 23,785–26,997 bp · −
psbM · NC_084168.1 · 29,162–29,266 bp · −
trnD-GUC · NC_084168.1 · 29,781–29,854 bp · −
trnY-GUA · NC_084168.1 · 29,954–30,037 bp · −
trnE-UUC · NC_084168.1 · 30,097–30,169 bp · −
trnS-UGA · NC_084168.1 · 34,712–34,804 bp · −
trnfM-CAU · NC_084168.1 · 35,834–35,907 bp · −
rps14 · NC_084168.1 · 36,052–36,354 bp · −
psaB · NC_084168.1 · 36,477–38,681 bp · −
psaA · NC_084168.1 · 38,707–40,959 bp · −
ycf3 · NC_084168.1 · 41,681–43,579 bp · −
rps4 · NC_084168.1 · 44,397–45,002 bp · −
trnT-UGU · NC_084168.1 · 45,346–45,418 bp · −
ndhJ · NC_084168.1 · 47,640–48,116 bp · −
ndhK · NC_084168.1 · 48,217–48,891 bp · −
ndhC · NC_084168.1 · 48,944–49,306 bp · −
trnV-UAC · NC_084168.1 · 50,132–50,796 bp · −
atpE · NC_084168.1 · 51,249–51,650 bp · −
atpB · NC_084168.1 · 51,647–53,143 bp · −
psbJ · NC_084168.1 · 62,561–62,683 bp · −
psbL · NC_084168.1 · 62,825–62,941 bp · −
psbF · NC_084168.1 · 62,965–63,084 bp · −
psbE · NC_084168.1 · 63,099–63,350 bp · −
trnW-CCA · NC_084168.1 · 64,742–64,815 bp · −
trnP-UGG · NC_084168.1 · 64,977–65,050 bp · −
rpl20 · NC_084168.1 · 66,913–67,299 bp · −
rps12 · NC_084168.1 · 68,139–68,252 bp · −
rps12 · NC_084168.1 · 95,381–96,177 bp · −
clpP · NC_084168.1 · 68,378–70,320 bp · −
psbN · NC_084168.1 · 72,647–72,778 bp · −
rpoA · NC_084168.1 · 76,154–77,167 bp · −
rps11 · NC_084168.1 · 77,237–77,653 bp · −
rpl36 · NC_084168.1 · 77,755–77,868 bp · −
infA · NC_084168.1 · 77,964–78,197 bp · −
rps8 · NC_084168.1 · 78,328–78,732 bp · −
rpl14 · NC_084168.1 · 78,900–79,268 bp · −
rpl16 · NC_084168.1 · 79,396–80,629 bp · −
rps3 · NC_084168.1 · 80,786–81,436 bp · −
rpl22 · NC_084168.1 · 81,421–81,888 bp · −
rps19 · NC_084168.1 · 81,943–82,221 bp · −
rpl2 · NC_084168.1 · 82,274–83,762 bp · −
rpl23 · NC_084168.1 · 83,781–84,062 bp · −
trnI-CAU · NC_084168.1 · 84,228–84,301 bp · −
trnL-CAA · NC_084168.1 · 91,743–91,823 bp · −
ndhB · NC_084168.1 · 92,375–94,584 bp · −
rps7 · NC_084168.1 · 94,860–95,327 bp · −
trnN-GUU · NC_084168.1 · 106,218–106,289 bp · −
ndhF · NC_084168.1 · 107,676–109,916 bp · −
ndhD · NC_084168.1 · 112,476–114,005 bp · −
psaC · NC_084168.1 · 114,098–114,343 bp · −
ndhE · NC_084168.1 · 114,594–114,899 bp · −
ndhG · NC_084168.1 · 115,133–115,663 bp · −
ndhI · NC_084168.1 · 116,001–116,507 bp · −
ndhA · NC_084168.1 · 116,583–118,655 bp · −
ndhH · NC_084168.1 · 118,657–119,838 bp · −
rps15 · NC_084168.1 · 119,935–120,207 bp · −
ycf1 · NC_084168.1 · 120,583–123,912 bp · −
trnR-ACG · NC_084168.1 · 126,946–127,019 bp · −
rrn5S · NC_084168.1 · 127,272–127,392 bp · −
rrn4.5S · NC_084168.1 · 127,622–127,724 bp · −
rrn23S · NC_084168.1 · 127,823–130,632 bp · −
trnA-UGC · NC_084168.1 · 130,803–131,679 bp · −
trnI-GAU · NC_084168.1 · 131,739–132,758 bp · −
rrn16S · NC_084168.1 · 133,057–134,546 bp · −
trnV-GAC · NC_084168.1 · 134,778–134,849 bp · −
ycf15 · NC_084168.1 · 141,129–141,326 bp · −
ycf2 · NC_084168.1 · 141,468–148,214 bp · −
psbK · NC_084168.1 · 7,530–7,715 bp · +
psbI · NC_084168.1 · 8,096–8,206 bp · +
trnG-UCC · NC_084168.1 · 9,089–9,849 bp · +
trnR-UCU · NC_084168.1 · 10,035–10,106 bp · +
trnC-GCA · NC_084168.1 · 28,148–28,218 bp · +
petN · NC_084168.1 · 28,526–28,615 bp · +
trnT-GGU · NC_084168.1 · 30,576–30,647 bp · +
psbD · NC_084168.1 · 32,027–33,088 bp · +
psbC · NC_084168.1 · 33,036–34,457 bp · +
psbZ · NC_084168.1 · 35,130–35,318 bp · +
trnG-GCC · NC_084168.1 · 35,585–35,655 bp · +
trnS-GGA · NC_084168.1 · 44,000–44,086 bp · +
trnL-UAA · NC_084168.1 · 46,072–46,637 bp · +
trnF-GAA · NC_084168.1 · 46,936–47,008 bp · +
trnM-CAU · NC_084168.1 · 50,977–51,049 bp · +
rbcL · NC_084168.1 · 53,941–55,389 bp · +
accD · NC_084168.1 · 56,116–57,591 bp · +
psaI · NC_084168.1 · 58,045–58,155 bp · +
ycf4 · NC_084168.1 · 58,568–59,122 bp · +
cemA · NC_084168.1 · 59,776–60,465 bp · +
petA · NC_084168.1 · 60,693–61,655 bp · +
petL · NC_084168.1 · 64,240–64,335 bp · +
petG · NC_084168.1 · 64,505–64,618 bp · +
psaJ · NC_084168.1 · 65,350–65,484 bp · +
rpl33 · NC_084168.1 · 65,970–66,170 bp · +
rps18 · NC_084168.1 · 66,361–66,666 bp · +
rps12 · NC_084168.1 · 136,427–137,223 bp · +
psbB · NC_084168.1 · 70,778–72,304 bp · +
psbT · NC_084168.1 · 72,480–72,581 bp · +
psbH · NC_084168.1 · 72,884–73,105 bp · +
petB · NC_084168.1 · 73,222–74,560 bp · +
petD · NC_084168.1 · 74,754–75,968 bp · +
ycf2 · NC_084168.1 · 84,390–91,136 bp · +
ycf15 · NC_084168.1 · 91,278–91,475 bp · +
trnV-GAC · NC_084168.1 · 97,755–97,826 bp · +
rrn16S · NC_084168.1 · 98,058–99,547 bp · +
trnI-GAU · NC_084168.1 · 99,846–100,865 bp · +
trnA-UGC · NC_084168.1 · 100,925–101,801 bp · +
rrn23S · NC_084168.1 · 101,972–104,781 bp · +
rrn4.5S · NC_084168.1 · 104,880–104,982 bp · +
rrn5S · NC_084168.1 · 105,212–105,332 bp · +
trnR-ACG · NC_084168.1 · 105,585–105,658 bp · +
ycf1 · NC_084168.1 · 106,631–107,785 bp · +
rpl32 · NC_084168.1 · 110,499–110,675 bp · +
trnL-UAG · NC_084168.1 · 111,074–111,153 bp · +
ccsA · NC_084168.1 · 111,247–112,218 bp · +
trnN-GUU · NC_084168.1 · 126,315–126,386 bp · +
rps7 · NC_084168.1 · 137,277–137,744 bp · +
ndhB · NC_084168.1 · 138,020–140,229 bp · +
trnL-CAA · NC_084168.1 · 140,781–140,861 bp · +
trnI-CAU · NC_084168.1 · 148,303–148,376 bp · +
rpl23 · NC_084168.1 · 148,542–148,823 bp · +
rpl2 · NC_084168.1 · 148,842–150,330 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Ajuga ovalifolia
ANNOTATED PLASTOME
NC_084168.1
150,443 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37611 75222 112832 150443 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 78 75 Locate
psbA gene − 402 1460 1059 Locate
trnK-UUU gene − 1693 4262 2570 Locate
matK gene − 1959 3521 1563 Locate
rps16 gene − 5156 6299 1144 Locate
trnQ-UUG gene − 7121 7192 72 Locate
psbK gene + 7530 7715 186 Locate
psbI gene + 8096 8206 111 Locate
trnS-GCU gene − 8322 8409 88 Locate
trnG-UCC gene + 9089 9849 761 Locate
trnR-UCU gene + 10035 10106 72 Locate
atpA gene − 10212 11735 1524 Locate
atpF gene − 11851 13096 1246 Locate
atpH gene − 13454 13699 246 Locate
atpI gene − 14676 15419 744 Locate
rps2 gene − 15654 16364 711 Locate
rpoC2 gene − 16663 20748 4086 Locate
rpoC1 gene − 20909 23758 2850 Locate
rpoB gene − 23785 26997 3213 Locate
trnC-GCA gene + 28148 28218 71 Locate
petN gene + 28526 28615 90 Locate
psbM gene − 29162 29266 105 Locate
trnD-GUC gene − 29781 29854 74 Locate
trnY-GUA gene − 29954 30037 84 Locate
trnE-UUC gene − 30097 30169 73 Locate
trnT-GGU gene + 30576 30647 72 Locate
psbD gene + 32027 33088 1062 Locate
psbC gene + 33036 34457 1422 Locate
trnS-UGA gene − 34712 34804 93 Locate
psbZ gene + 35130 35318 189 Locate
trnG-GCC gene + 35585 35655 71 Locate
trnfM-CAU gene − 35834 35907 74 Locate
rps14 gene − 36052 36354 303 Locate
psaB gene − 36477 38681 2205 Locate
psaA gene − 38707 40959 2253 Locate
ycf3 gene − 41681 43579 1899 Locate
trnS-GGA gene + 44000 44086 87 Locate
rps4 gene − 44397 45002 606 Locate
trnT-UGU gene − 45346 45418 73 Locate
trnL-UAA gene + 46072 46637 566 Locate
trnF-GAA gene + 46936 47008 73 Locate
ndhJ gene − 47640 48116 477 Locate
ndhK gene − 48217 48891 675 Locate
ndhC gene − 48944 49306 363 Locate
trnV-UAC gene − 50132 50796 665 Locate
trnM-CAU gene + 50977 51049 73 Locate
atpE gene − 51249 51650 402 Locate
atpB gene − 51647 53143 1497 Locate
rbcL gene + 53941 55389 1449 Locate
accD gene + 56116 57591 1476 Locate
psaI gene + 58045 58155 111 Locate
ycf4 gene + 58568 59122 555 Locate
cemA gene + 59776 60465 690 Locate
petA gene + 60693 61655 963 Locate
psbJ gene − 62561 62683 123 Locate
psbL gene − 62825 62941 117 Locate
psbF gene − 62965 63084 120 Locate
psbE gene − 63099 63350 252 Locate
petL gene + 64240 64335 96 Locate
petG gene + 64505 64618 114 Locate
trnW-CCA gene − 64742 64815 74 Locate
trnP-UGG gene − 64977 65050 74 Locate
psaJ gene + 65350 65484 135 Locate
rpl33 gene + 65970 66170 201 Locate
rps18 gene + 66361 66666 306 Locate
rpl20 gene − 66913 67299 387 Locate
rps12 gene − 68139 68252 114 Locate
clpP gene − 68378 70320 1943 Locate
psbB gene + 70778 72304 1527 Locate
psbT gene + 72480 72581 102 Locate
psbN gene − 72647 72778 132 Locate
psbH gene + 72884 73105 222 Locate
petB gene + 73222 74560 1339 Locate
petD gene + 74754 75968 1215 Locate
rpoA gene − 76154 77167 1014 Locate
rps11 gene − 77237 77653 417 Locate
rpl36 gene − 77755 77868 114 Locate
infA gene − 77964 78197 234 Locate
rps8 gene − 78328 78732 405 Locate
rpl14 gene − 78900 79268 369 Locate
rpl16 gene − 79396 80629 1234 Locate
rps3 gene − 80786 81436 651 Locate
rpl22 gene − 81421 81888 468 Locate
rps19 gene − 81943 82221 279 Locate
rpl2 gene − 82274 83762 1489 Locate
rpl23 gene − 83781 84062 282 Locate
trnI-CAU gene − 84228 84301 74 Locate
ycf2 gene + 84390 91136 6747 Locate
ycf15 gene + 91278 91475 198 Locate
trnL-CAA gene − 91743 91823 81 Locate
ndhB gene − 92375 94584 2210 Locate
rps7 gene − 94860 95327 468 Locate
rps12 gene − 95381 96177 797 Locate
trnV-GAC gene + 97755 97826 72 Locate
rrn16S gene + 98058 99547 1490 Locate
trnI-GAU gene + 99846 100865 1020 Locate
trnA-UGC gene + 100925 101801 877 Locate
rrn23S gene + 101972 104781 2810 Locate
rrn4.5S gene + 104880 104982 103 Locate
rrn5S gene + 105212 105332 121 Locate
trnR-ACG gene + 105585 105658 74 Locate
trnN-GUU gene − 106218 106289 72 Locate
ycf1 gene + 106631 107785 1155 Locate
ndhF gene − 107676 109916 2241 Locate
rpl32 gene + 110499 110675 177 Locate
trnL-UAG gene + 111074 111153 80 Locate
ccsA gene + 111247 112218 972 Locate
ndhD gene − 112476 114005 1530 Locate
psaC gene − 114098 114343 246 Locate
ndhE gene − 114594 114899 306 Locate
ndhG gene − 115133 115663 531 Locate
ndhI gene − 116001 116507 507 Locate
ndhA gene − 116583 118655 2073 Locate
ndhH gene − 118657 119838 1182 Locate
rps15 gene − 119935 120207 273 Locate
ycf1 gene − 120583 123912 3330 Locate
trnN-GUU gene + 126315 126386 72 Locate
trnR-ACG gene − 126946 127019 74 Locate
rrn5S gene − 127272 127392 121 Locate
rrn4.5S gene − 127622 127724 103 Locate
rrn23S gene − 127823 130632 2810 Locate
trnA-UGC gene − 130803 131679 877 Locate
trnI-GAU gene − 131739 132758 1020 Locate
rrn16S gene − 133057 134546 1490 Locate
trnV-GAC gene − 134778 134849 72 Locate
rps12 gene + 136427 137223 797 Locate
rps7 gene + 137277 137744 468 Locate
ndhB gene + 138020 140229 2210 Locate
trnL-CAA gene + 140781 140861 81 Locate
ycf15 gene − 141129 141326 198 Locate
ycf2 gene − 141468 148214 6747 Locate
trnI-CAU gene + 148303 148376 74 Locate
rpl23 gene + 148542 148823 282 Locate
rpl2 gene + 148842 150330 1489 Locate
Status Available
Accession NC_084168.1
Length 150,443 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources