Ajuga turkestanica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PV192927.1 · 5–79 bp · −
psbA · PV192927.1 · 410–1,468 bp · −
trnK-UUU · PV192927.1 · 1,694–4,262 bp · −
matK · PV192927.1 · 1,960–3,522 bp · −
rps16 · PV192927.1 · 5,172–6,324 bp · −
trnQ-UUG · PV192927.1 · 7,542–7,613 bp · −
trnS-GCU · PV192927.1 · 8,739–8,826 bp · −
atpA · PV192927.1 · 10,479–12,002 bp · −
atpF · PV192927.1 · 12,117–13,357 bp · −
atpH · PV192927.1 · 13,717–13,962 bp · −
atpI · PV192927.1 · 14,942–15,685 bp · −
rps2 · PV192927.1 · 15,901–16,611 bp · −
rpoC2 · PV192927.1 · 16,898–20,971 bp · −
rpoC1 · PV192927.1 · 21,143–23,986 bp · −
rpoB · PV192927.1 · 24,013–27,225 bp · −
psbM · PV192927.1 · 29,457–29,561 bp · −
trnD-GUC · PV192927.1 · 30,076–30,149 bp · −
trnY-GUA · PV192927.1 · 30,248–30,331 bp · −
trnE-UUC · PV192927.1 · 30,391–30,463 bp · −
trnS-UGA · PV192927.1 · 35,021–35,113 bp · −
trnfM-CAU · PV192927.1 · 36,140–36,213 bp · −
rps14 · PV192927.1 · 36,358–36,660 bp · −
psaB · PV192927.1 · 36,783–38,987 bp · −
psaA · PV192927.1 · 39,013–41,265 bp · −
pafI · PV192927.1 · 41,978–43,882 bp · −
rps4 · PV192927.1 · 44,705–45,310 bp · −
trnT-UGU · PV192927.1 · 45,653–45,725 bp · −
ndhJ · PV192927.1 · 47,926–48,402 bp · −
ndhK · PV192927.1 · 48,503–49,186 bp · −
ndhC · PV192927.1 · 49,239–49,601 bp · −
trnV-UAC · PV192927.1 · 50,427–51,092 bp · −
atpE · PV192927.1 · 51,552–51,953 bp · −
atpB · PV192927.1 · 51,950–53,446 bp · −
psbJ · PV192927.1 · 62,997–63,119 bp · −
psbL · PV192927.1 · 63,261–63,377 bp · −
psbF · PV192927.1 · 63,401–63,520 bp · −
psbE · PV192927.1 · 63,535–63,786 bp · −
trnW-CCA · PV192927.1 · 65,076–65,149 bp · −
trnP-UGG · PV192927.1 · 65,323–65,396 bp · −
rpl20 · PV192927.1 · 67,249–67,635 bp · −
rps12 · PV192927.1 · 68,470–68,583 bp · −
rps12 · PV192927.1 · 95,614–96,410 bp · −
clpP1 · PV192927.1 · 68,701–70,642 bp · −
psbN · PV192927.1 · 72,967–73,098 bp · −
rpoA · PV192927.1 · 76,479–77,492 bp · −
rps11 · PV192927.1 · 77,563–77,979 bp · −
rpl36 · PV192927.1 · 78,081–78,194 bp · −
infA · PV192927.1 · 78,290–78,523 bp · −
rps8 · PV192927.1 · 78,653–79,057 bp · −
rpl14 · PV192927.1 · 79,204–79,572 bp · −
rpl16 · PV192927.1 · 79,699–80,968 bp · −
rps3 · PV192927.1 · 81,127–81,777 bp · −
rpl22 · PV192927.1 · 81,762–82,229 bp · −
rps19 · PV192927.1 · 82,284–82,562 bp · −
rpl2 · PV192927.1 · 82,616–84,095 bp · −
rpl23 · PV192927.1 · 84,114–84,395 bp · −
trnI-CAU · PV192927.1 · 84,561–84,634 bp · −
trnL-CAA · PV192927.1 · 91,972–92,052 bp · −
ndhB · PV192927.1 · 92,601–94,813 bp · −
rps7 · PV192927.1 · 95,093–95,560 bp · −
trnN-GUU · PV192927.1 · 106,455–106,526 bp · −
ndhF · PV192927.1 · 107,872–110,151 bp · −
ndhD · PV192927.1 · 112,693–114,195 bp · −
psaC · PV192927.1 · 114,311–114,556 bp · −
ndhE · PV192927.1 · 114,814–115,119 bp · −
ndhG · PV192927.1 · 115,345–115,875 bp · −
ndhI · PV192927.1 · 116,204–116,710 bp · −
ndhA · PV192927.1 · 116,786–118,892 bp · −
ndhH · PV192927.1 · 118,894–120,075 bp · −
rps15 · PV192927.1 · 120,172–120,444 bp · −
ycf1 · PV192927.1 · 120,799–126,354 bp · −
trnR-ACG · PV192927.1 · 127,320–127,393 bp · −
rrn5 · PV192927.1 · 127,646–127,766 bp · −
rrn4.5 · PV192927.1 · 127,996–128,098 bp · −
rrn23 · PV192927.1 · 128,197–131,015 bp · −
trnA-UGC · PV192927.1 · 131,177–132,053 bp · −
trnI-GAU · PV192927.1 · 132,113–133,131 bp · −
rrn16 · PV192927.1 · 133,430–134,920 bp · −
trnV-GAC · PV192927.1 · 135,150–135,221 bp · −
ycf2 · PV192927.1 · 141,715–148,470 bp · −
psbK · PV192927.1 · 7,951–8,136 bp · +
psbI · PV192927.1 · 8,518–8,628 bp · +
trnG-UCC · PV192927.1 · 9,364–10,124 bp · +
trnR-UCU · PV192927.1 · 10,301–10,372 bp · +
trnC-GCA · PV192927.1 · 28,412–28,482 bp · +
petN · PV192927.1 · 28,795–28,884 bp · +
trnT-GGU · PV192927.1 · 30,870–30,941 bp · +
psbD · PV192927.1 · 32,336–33,397 bp · +
psbC · PV192927.1 · 33,381–34,766 bp · +
psbZ · PV192927.1 · 35,438–35,626 bp · +
trnG-GCC · PV192927.1 · 35,895–35,965 bp · +
trnS-GGA · PV192927.1 · 44,309–44,395 bp · +
trnL-UAA · PV192927.1 · 46,391–46,956 bp · +
trnF-GAA · PV192927.1 · 47,261–47,333 bp · +
trnM-CAU · PV192927.1 · 51,273–51,345 bp · +
rbcL · PV192927.1 · 54,263–55,729 bp · +
accD · PV192927.1 · 56,436–57,911 bp · +
psaI · PV192927.1 · 58,496–58,606 bp · +
pafII · PV192927.1 · 59,007–59,561 bp · +
cemA · PV192927.1 · 60,214–60,903 bp · +
petA · PV192927.1 · 61,150–62,112 bp · +
petL · PV192927.1 · 64,577–64,672 bp · +
petG · PV192927.1 · 64,839–64,952 bp · +
psaJ · PV192927.1 · 65,712–65,846 bp · +
rpl33 · PV192927.1 · 66,319–66,519 bp · +
rps18 · PV192927.1 · 66,698–67,003 bp · +
rps12 · PV192927.1 · 136,812–137,608 bp · +
psbB · PV192927.1 · 71,098–72,624 bp · +
psbT · PV192927.1 · 72,800–72,901 bp · +
psbH · PV192927.1 · 73,204–73,425 bp · +
petB · PV192927.1 · 73,542–74,894 bp · +
petD · PV192927.1 · 75,079–76,293 bp · +
ycf2 · PV192927.1 · 84,752–91,507 bp · +
trnV-GAC · PV192927.1 · 98,001–98,072 bp · +
rrn16 · PV192927.1 · 98,302–99,792 bp · +
trnI-GAU · PV192927.1 · 100,091–101,109 bp · +
trnA-UGC · PV192927.1 · 101,169–102,045 bp · +
rrn23 · PV192927.1 · 102,207–105,025 bp · +
rrn4.5 · PV192927.1 · 105,124–105,226 bp · +
rrn5 · PV192927.1 · 105,456–105,576 bp · +
trnR-ACG · PV192927.1 · 105,829–105,902 bp · +
ycf1 · PV192927.1 · 106,868–107,986 bp · +
rpl32 · PV192927.1 · 110,715–110,891 bp · +
trnL-UAG · PV192927.1 · 111,277–111,356 bp · +
ccsA · PV192927.1 · 111,451–112,422 bp · +
trnN-GUU · PV192927.1 · 126,696–126,767 bp · +
rps7 · PV192927.1 · 137,662–138,129 bp · +
ndhB · PV192927.1 · 138,409–140,621 bp · +
trnL-CAA · PV192927.1 · 141,170–141,250 bp · +
trnI-CAU · PV192927.1 · 148,588–148,661 bp · +
rpl23 · PV192927.1 · 148,827–149,108 bp · +
rpl2 · PV192927.1 · 149,127–150,606 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Ajuga turkestanica
ANNOTATED PLASTOME
PV192927.1
150,719 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37680 75360 113039 150719 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 5 79 75 Locate
psbA gene − 410 1468 1059 Locate
trnK-UUU gene − 1694 4262 2569 Locate
matK gene − 1960 3522 1563 Locate
rps16 gene − 5172 6324 1153 Locate
trnQ-UUG gene − 7542 7613 72 Locate
psbK gene + 7951 8136 186 Locate
psbI gene + 8518 8628 111 Locate
trnS-GCU gene − 8739 8826 88 Locate
trnG-UCC gene + 9364 10124 761 Locate
trnR-UCU gene + 10301 10372 72 Locate
atpA gene − 10479 12002 1524 Locate
atpF gene − 12117 13357 1241 Locate
atpH gene − 13717 13962 246 Locate
atpI gene − 14942 15685 744 Locate
rps2 gene − 15901 16611 711 Locate
rpoC2 gene − 16898 20971 4074 Locate
rpoC1 gene − 21143 23986 2844 Locate
rpoB gene − 24013 27225 3213 Locate
trnC-GCA gene + 28412 28482 71 Locate
petN gene + 28795 28884 90 Locate
psbM gene − 29457 29561 105 Locate
trnD-GUC gene − 30076 30149 74 Locate
trnY-GUA gene − 30248 30331 84 Locate
trnE-UUC gene − 30391 30463 73 Locate
trnT-GGU gene + 30870 30941 72 Locate
psbD gene + 32336 33397 1062 Locate
psbC gene + 33381 34766 1386 Locate
trnS-UGA gene − 35021 35113 93 Locate
psbZ gene + 35438 35626 189 Locate
trnG-GCC gene + 35895 35965 71 Locate
trnfM-CAU gene − 36140 36213 74 Locate
rps14 gene − 36358 36660 303 Locate
psaB gene − 36783 38987 2205 Locate
psaA gene − 39013 41265 2253 Locate
pafI gene − 41978 43882 1905 Locate
trnS-GGA gene + 44309 44395 87 Locate
rps4 gene − 44705 45310 606 Locate
trnT-UGU gene − 45653 45725 73 Locate
trnL-UAA gene + 46391 46956 566 Locate
trnF-GAA gene + 47261 47333 73 Locate
ndhJ gene − 47926 48402 477 Locate
ndhK gene − 48503 49186 684 Locate
ndhC gene − 49239 49601 363 Locate
trnV-UAC gene − 50427 51092 666 Locate
trnM-CAU gene + 51273 51345 73 Locate
atpE gene − 51552 51953 402 Locate
atpB gene − 51950 53446 1497 Locate
rbcL gene + 54263 55729 1467 Locate
accD gene + 56436 57911 1476 Locate
psaI gene + 58496 58606 111 Locate
pafII gene + 59007 59561 555 Locate
cemA gene + 60214 60903 690 Locate
petA gene + 61150 62112 963 Locate
psbJ gene − 62997 63119 123 Locate
psbL gene − 63261 63377 117 Locate
psbF gene − 63401 63520 120 Locate
psbE gene − 63535 63786 252 Locate
petL gene + 64577 64672 96 Locate
petG gene + 64839 64952 114 Locate
trnW-CCA gene − 65076 65149 74 Locate
trnP-UGG gene − 65323 65396 74 Locate
psaJ gene + 65712 65846 135 Locate
rpl33 gene + 66319 66519 201 Locate
rps18 gene + 66698 67003 306 Locate
rpl20 gene − 67249 67635 387 Locate
rps12 gene − 68470 68583 114 Locate
clpP1 gene − 68701 70642 1942 Locate
psbB gene + 71098 72624 1527 Locate
psbT gene + 72800 72901 102 Locate
psbN gene − 72967 73098 132 Locate
psbH gene + 73204 73425 222 Locate
petB gene + 73542 74894 1353 Locate
petD gene + 75079 76293 1215 Locate
rpoA gene − 76479 77492 1014 Locate
rps11 gene − 77563 77979 417 Locate
rpl36 gene − 78081 78194 114 Locate
infA gene − 78290 78523 234 Locate
rps8 gene − 78653 79057 405 Locate
rpl14 gene − 79204 79572 369 Locate
rpl16 gene − 79699 80968 1270 Locate
rps3 gene − 81127 81777 651 Locate
rpl22 gene − 81762 82229 468 Locate
rps19 gene − 82284 82562 279 Locate
rpl2 gene − 82616 84095 1480 Locate
rpl23 gene − 84114 84395 282 Locate
trnI-CAU gene − 84561 84634 74 Locate
ycf2 gene + 84752 91507 6756 Locate
trnL-CAA gene − 91972 92052 81 Locate
ndhB gene − 92601 94813 2213 Locate
rps7 gene − 95093 95560 468 Locate
rps12 gene − 95614 96410 797 Locate
trnV-GAC gene + 98001 98072 72 Locate
rrn16 gene + 98302 99792 1491 Locate
trnI-GAU gene + 100091 101109 1019 Locate
trnA-UGC gene + 101169 102045 877 Locate
rrn23 gene + 102207 105025 2819 Locate
rrn4.5 gene + 105124 105226 103 Locate
rrn5 gene + 105456 105576 121 Locate
trnR-ACG gene + 105829 105902 74 Locate
trnN-GUU gene − 106455 106526 72 Locate
ycf1 gene + 106868 107986 1119 Locate
ndhF gene − 107872 110151 2280 Locate
rpl32 gene + 110715 110891 177 Locate
trnL-UAG gene + 111277 111356 80 Locate
ccsA gene + 111451 112422 972 Locate
ndhD gene − 112693 114195 1503 Locate
psaC gene − 114311 114556 246 Locate
ndhE gene − 114814 115119 306 Locate
ndhG gene − 115345 115875 531 Locate
ndhI gene − 116204 116710 507 Locate
ndhA gene − 116786 118892 2107 Locate
ndhH gene − 118894 120075 1182 Locate
rps15 gene − 120172 120444 273 Locate
ycf1 gene − 120799 126354 5556 Locate
trnN-GUU gene + 126696 126767 72 Locate
trnR-ACG gene − 127320 127393 74 Locate
rrn5 gene − 127646 127766 121 Locate
rrn4.5 gene − 127996 128098 103 Locate
rrn23 gene − 128197 131015 2819 Locate
trnA-UGC gene − 131177 132053 877 Locate
trnI-GAU gene − 132113 133131 1019 Locate
rrn16 gene − 133430 134920 1491 Locate
trnV-GAC gene − 135150 135221 72 Locate
rps12 gene + 136812 137608 797 Locate
rps7 gene + 137662 138129 468 Locate
ndhB gene + 138409 140621 2213 Locate
trnL-CAA gene + 141170 141250 81 Locate
ycf2 gene − 141715 148470 6756 Locate
trnI-CAU gene + 148588 148661 74 Locate
rpl23 gene + 148827 149108 282 Locate
rpl2 gene + 149127 150606 1480 Locate
Status Available
Accession PV192927.1
Length 150,719 bp
GC content 38.2%
Annotated genes 131
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 13 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources