Ballota nigra chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_066022.1 · 5–79 bp · −
psbA · NC_066022.1 · 323–1,381 bp · −
trnK-UUU · NC_066022.1 · 1,614–4,193 bp · −
matK · NC_066022.1 · 1,923–3,443 bp · −
rps16 · NC_066022.1 · 4,958–6,097 bp · −
trnQ-UUG · NC_066022.1 · 7,074–7,145 bp · −
trnS-GCU · NC_066022.1 · 8,278–8,365 bp · −
atpA · NC_066022.1 · 10,140–11,663 bp · −
atpF · NC_066022.1 · 11,750–12,970 bp · −
atpH · NC_066022.1 · 13,328–13,573 bp · −
atpI · NC_066022.1 · 14,562–15,305 bp · −
rps2 · NC_066022.1 · 15,537–16,247 bp · −
rpoC2 · NC_066022.1 · 16,468–20,637 bp · −
rpoC1 · NC_066022.1 · 20,795–23,623 bp · −
rpoB · NC_066022.1 · 23,650–26,862 bp · −
psbM · NC_066022.1 · 29,715–29,819 bp · −
trnD-GUC · NC_066022.1 · 30,367–30,440 bp · −
trnY-GUA · NC_066022.1 · 30,546–30,629 bp · −
trnE-UUC · NC_066022.1 · 30,689–30,761 bp · −
trnS-UGA · NC_066022.1 · 35,346–35,438 bp · −
trnfM-CAU · NC_066022.1 · 36,394–36,467 bp · −
rps14 · NC_066022.1 · 36,624–36,926 bp · −
psaB · NC_066022.1 · 37,054–39,258 bp · −
psaA · NC_066022.1 · 39,284–41,536 bp · −
pafI · NC_066022.1 · 42,251–44,182 bp · −
rps4 · NC_066022.1 · 44,864–45,469 bp · −
trnT-UGU · NC_066022.1 · 45,872–45,944 bp · −
ndhJ · NC_066022.1 · 48,249–48,725 bp · −
ndhK · NC_066022.1 · 48,826–49,587 bp · −
ndhC · NC_066022.1 · 49,557–49,919 bp · −
trnV-UAC · NC_066022.1 · 50,883–51,547 bp · −
atpE · NC_066022.1 · 52,031–52,432 bp · −
atpB · NC_066022.1 · 52,429–53,925 bp · −
psbJ · NC_066022.1 · 63,610–63,732 bp · −
psbL · NC_066022.1 · 63,870–63,986 bp · −
psbF · NC_066022.1 · 64,010–64,129 bp · −
psbE · NC_066022.1 · 64,144–64,395 bp · −
trnW-CCA · NC_066022.1 · 65,833–65,906 bp · −
trnP-UGG · NC_066022.1 · 66,070–66,143 bp · −
rpl20 · NC_066022.1 · 67,890–68,264 bp · −
rps12 · NC_066022.1 · 69,006–69,119 bp · −
rps12 · NC_066022.1 · 96,285–97,082 bp · −
clpP1 · NC_066022.1 · 69,250–71,120 bp · −
pbf1 · NC_066022.1 · 73,444–73,575 bp · −
rpoA · NC_066022.1 · 76,963–77,976 bp · −
rps11 · NC_066022.1 · 78,048–78,464 bp · −
rpl36 · NC_066022.1 · 78,581–78,694 bp · −
infA · NC_066022.1 · 78,791–79,024 bp · −
rps8 · NC_066022.1 · 79,142–79,555 bp · −
rpl14 · NC_066022.1 · 79,729–80,097 bp · −
rpl16 · NC_066022.1 · 80,225–81,520 bp · −
rps3 · NC_066022.1 · 81,667–82,329 bp · −
rpl22 · NC_066022.1 · 82,314–82,778 bp · −
rps19 · NC_066022.1 · 82,837–83,115 bp · −
rpl2 · NC_066022.1 · 83,168–84,652 bp · −
rpl23 · NC_066022.1 · 84,671–84,952 bp · −
trnI-CAU · NC_066022.1 · 85,061–85,134 bp · −
trnL-CAA · NC_066022.1 · 92,650–92,730 bp · −
ndhB · NC_066022.1 · 93,275–95,486 bp · −
rps7 · NC_066022.1 · 95,764–96,231 bp · −
trnN-GUU · NC_066022.1 · 107,184–107,255 bp · −
ndhF · NC_066022.1 · 108,645–110,867 bp · −
ndhD · NC_066022.1 · 113,592–114,986 bp · −
psaC · NC_066022.1 · 115,215–115,460 bp · −
ndhE · NC_066022.1 · 115,723–116,028 bp · −
ndhG · NC_066022.1 · 116,244–116,774 bp · −
ndhI · NC_066022.1 · 117,151–117,657 bp · −
ndhA · NC_066022.1 · 117,744–119,909 bp · −
ndhH · NC_066022.1 · 119,911–121,092 bp · −
rps15 · NC_066022.1 · 121,193–121,465 bp · −
ycf1 · NC_066022.1 · 121,849–127,404 bp · −
trnR-ACG · NC_066022.1 · 128,374–128,447 bp · −
rrn5 · NC_066022.1 · 128,682–128,802 bp · −
rrn4.5 · NC_066022.1 · 129,058–129,160 bp · −
rrn23 · NC_066022.1 · 129,259–132,069 bp · −
trnA-UGC · NC_066022.1 · 132,261–133,139 bp · −
trnI-GAU · NC_066022.1 · 133,204–134,212 bp · −
rrn16 · NC_066022.1 · 134,502–135,992 bp · −
trnV-GAC · NC_066022.1 · 136,220–136,291 bp · −
ycf15 · NC_066022.1 · 142,596–142,844 bp · −
ycf2 · NC_066022.1 · 142,887–149,762 bp · −
psbK · NC_066022.1 · 7,482–7,667 bp · +
psbI · NC_066022.1 · 8,046–8,156 bp · +
trnG-UCC · NC_066022.1 · 9,043–9,801 bp · +
trnR-UCU · NC_066022.1 · 9,972–10,043 bp · +
trnC-GCA · NC_066022.1 · 27,960–28,030 bp · +
petN · NC_066022.1 · 28,863–28,952 bp · +
trnT-GGU · NC_066022.1 · 31,358–31,429 bp · +
psbD · NC_066022.1 · 32,680–33,741 bp · +
psbC · NC_066022.1 · 33,725–35,110 bp · +
psbZ · NC_066022.1 · 35,764–35,952 bp · +
trnG-GCC · NC_066022.1 · 36,177–36,247 bp · +
trnS-GGA · NC_066022.1 · 44,494–44,580 bp · +
trnL-UAA · NC_066022.1 · 46,643–47,216 bp · +
trnF-GAA · NC_066022.1 · 47,515–47,587 bp · +
trnM-CAU · NC_066022.1 · 51,736–51,808 bp · +
rbcL · NC_066022.1 · 54,734–56,179 bp · +
accD · NC_066022.1 · 56,870–58,327 bp · +
psaI · NC_066022.1 · 59,039–59,149 bp · +
pafII · NC_066022.1 · 59,604–60,158 bp · +
cemA · NC_066022.1 · 60,714–61,403 bp · +
petA · NC_066022.1 · 61,609–62,571 bp · +
petL · NC_066022.1 · 65,320–65,415 bp · +
petG · NC_066022.1 · 65,590–65,703 bp · +
psaJ · NC_066022.1 · 66,416–66,550 bp · +
rpl33 · NC_066022.1 · 67,021–67,221 bp · +
rps18 · NC_066022.1 · 67,368–67,673 bp · +
psbB · NC_066022.1 · 71,558–73,084 bp · +
psbT · NC_066022.1 · 73,276–73,383 bp · +
psbH · NC_066022.1 · 73,679–73,900 bp · +
petB · NC_066022.1 · 74,025–75,398 bp · +
petD · NC_066022.1 · 75,593–76,800 bp · +
ycf2 · NC_066022.1 · 85,223–92,098 bp · +
ycf15 · NC_066022.1 · 92,141–92,389 bp · +
trnV-GAC · NC_066022.1 · 98,694–98,765 bp · +
rrn16 · NC_066022.1 · 98,993–100,483 bp · +
trnI-GAU · NC_066022.1 · 100,773–101,781 bp · +
trnA-UGC · NC_066022.1 · 101,846–102,724 bp · +
rrn23 · NC_066022.1 · 102,916–105,726 bp · +
rrn4.5 · NC_066022.1 · 105,825–105,927 bp · +
rrn5 · NC_066022.1 · 106,183–106,303 bp · +
trnR-ACG · NC_066022.1 · 106,538–106,611 bp · +
ycf1 · NC_066022.1 · 107,581–108,699 bp · +
rpl32 · NC_066022.1 · 111,372–111,548 bp · +
trnL-UAG · NC_066022.1 · 112,275–112,354 bp · +
ccsA · NC_066022.1 · 112,445–113,416 bp · +
trnN-GUU · NC_066022.1 · 127,730–127,801 bp · +
rps7 · NC_066022.1 · 138,754–139,221 bp · +
ndhB · NC_066022.1 · 139,499–141,710 bp · +
trnL-CAA · NC_066022.1 · 142,255–142,335 bp · +
trnI-CAU · NC_066022.1 · 149,851–149,924 bp · +
rpl23 · NC_066022.1 · 150,033–150,314 bp · +
rpl2 · NC_066022.1 · 150,333–151,817 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Ballota nigra
ANNOTATED PLASTOME
NC_066022.1
151,909 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37977 75954 113932 151909 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 5 79 75 Locate
psbA gene − 323 1381 1059 Locate
trnK-UUU gene − 1614 4193 2580 Locate
matK gene − 1923 3443 1521 Locate
rps16 gene − 4958 6097 1140 Locate
trnQ-UUG gene − 7074 7145 72 Locate
psbK gene + 7482 7667 186 Locate
psbI gene + 8046 8156 111 Locate
trnS-GCU gene − 8278 8365 88 Locate
trnG-UCC gene + 9043 9801 759 Locate
trnR-UCU gene + 9972 10043 72 Locate
atpA gene − 10140 11663 1524 Locate
atpF gene − 11750 12970 1221 Locate
atpH gene − 13328 13573 246 Locate
atpI gene − 14562 15305 744 Locate
rps2 gene − 15537 16247 711 Locate
rpoC2 gene − 16468 20637 4170 Locate
rpoC1 gene − 20795 23623 2829 Locate
rpoB gene − 23650 26862 3213 Locate
trnC-GCA gene + 27960 28030 71 Locate
petN gene + 28863 28952 90 Locate
psbM gene − 29715 29819 105 Locate
trnD-GUC gene − 30367 30440 74 Locate
trnY-GUA gene − 30546 30629 84 Locate
trnE-UUC gene − 30689 30761 73 Locate
trnT-GGU gene + 31358 31429 72 Locate
psbD gene + 32680 33741 1062 Locate
psbC gene + 33725 35110 1386 Locate
trnS-UGA gene − 35346 35438 93 Locate
psbZ gene + 35764 35952 189 Locate
trnG-GCC gene + 36177 36247 71 Locate
trnfM-CAU gene − 36394 36467 74 Locate
rps14 gene − 36624 36926 303 Locate
psaB gene − 37054 39258 2205 Locate
psaA gene − 39284 41536 2253 Locate
pafI gene − 42251 44182 1932 Locate
trnS-GGA gene + 44494 44580 87 Locate
rps4 gene − 44864 45469 606 Locate
trnT-UGU gene − 45872 45944 73 Locate
trnL-UAA gene + 46643 47216 574 Locate
trnF-GAA gene + 47515 47587 73 Locate
ndhJ gene − 48249 48725 477 Locate
ndhK gene − 48826 49587 762 Locate
ndhC gene − 49557 49919 363 Locate
trnV-UAC gene − 50883 51547 665 Locate
trnM-CAU gene + 51736 51808 73 Locate
atpE gene − 52031 52432 402 Locate
atpB gene − 52429 53925 1497 Locate
rbcL gene + 54734 56179 1446 Locate
accD gene + 56870 58327 1458 Locate
psaI gene + 59039 59149 111 Locate
pafII gene + 59604 60158 555 Locate
cemA gene + 60714 61403 690 Locate
petA gene + 61609 62571 963 Locate
psbJ gene − 63610 63732 123 Locate
psbL gene − 63870 63986 117 Locate
psbF gene − 64010 64129 120 Locate
psbE gene − 64144 64395 252 Locate
petL gene + 65320 65415 96 Locate
petG gene + 65590 65703 114 Locate
trnW-CCA gene − 65833 65906 74 Locate
trnP-UGG gene − 66070 66143 74 Locate
psaJ gene + 66416 66550 135 Locate
rpl33 gene + 67021 67221 201 Locate
rps18 gene + 67368 67673 306 Locate
rpl20 gene − 67890 68264 375 Locate
rps12 gene − 69006 69119 114 Locate
clpP1 gene − 69250 71120 1871 Locate
psbB gene + 71558 73084 1527 Locate
psbT gene + 73276 73383 108 Locate
pbf1 gene − 73444 73575 132 Locate
psbH gene + 73679 73900 222 Locate
petB gene + 74025 75398 1374 Locate
petD gene + 75593 76800 1208 Locate
rpoA gene − 76963 77976 1014 Locate
rps11 gene − 78048 78464 417 Locate
rpl36 gene − 78581 78694 114 Locate
infA gene − 78791 79024 234 Locate
rps8 gene − 79142 79555 414 Locate
rpl14 gene − 79729 80097 369 Locate
rpl16 gene − 80225 81520 1296 Locate
rps3 gene − 81667 82329 663 Locate
rpl22 gene − 82314 82778 465 Locate
rps19 gene − 82837 83115 279 Locate
rpl2 gene − 83168 84652 1485 Locate
rpl23 gene − 84671 84952 282 Locate
trnI-CAU gene − 85061 85134 74 Locate
ycf2 gene + 85223 92098 6876 Locate
ycf15 gene + 92141 92389 249 Locate
trnL-CAA gene − 92650 92730 81 Locate
ndhB gene − 93275 95486 2212 Locate
rps7 gene − 95764 96231 468 Locate
rps12 gene − 96285 97082 798 Locate
trnV-GAC gene + 98694 98765 72 Locate
rrn16 gene + 98993 100483 1491 Locate
trnI-GAU gene + 100773 101781 1009 Locate
trnA-UGC gene + 101846 102724 879 Locate
rrn23 gene + 102916 105726 2811 Locate
rrn4.5 gene + 105825 105927 103 Locate
rrn5 gene + 106183 106303 121 Locate
trnR-ACG gene + 106538 106611 74 Locate
trnN-GUU gene − 107184 107255 72 Locate
ycf1 gene + 107581 108699 1119 Locate
ndhF gene − 108645 110867 2223 Locate
rpl32 gene + 111372 111548 177 Locate
trnL-UAG gene + 112275 112354 80 Locate
ccsA gene + 112445 113416 972 Locate
ndhD gene − 113592 114986 1395 Locate
psaC gene − 115215 115460 246 Locate
ndhE gene − 115723 116028 306 Locate
ndhG gene − 116244 116774 531 Locate
ndhI gene − 117151 117657 507 Locate
ndhA gene − 117744 119909 2166 Locate
ndhH gene − 119911 121092 1182 Locate
rps15 gene − 121193 121465 273 Locate
ycf1 gene − 121849 127404 5556 Locate
trnN-GUU gene + 127730 127801 72 Locate
trnR-ACG gene − 128374 128447 74 Locate
rrn5 gene − 128682 128802 121 Locate
rrn4.5 gene − 129058 129160 103 Locate
rrn23 gene − 129259 132069 2811 Locate
trnA-UGC gene − 132261 133139 879 Locate
trnI-GAU gene − 133204 134212 1009 Locate
rrn16 gene − 134502 135992 1491 Locate
trnV-GAC gene − 136220 136291 72 Locate
rps7 gene + 138754 139221 468 Locate
ndhB gene + 139499 141710 2212 Locate
trnL-CAA gene + 142255 142335 81 Locate
ycf15 gene − 142596 142844 249 Locate
ycf2 gene − 142887 149762 6876 Locate
trnI-CAU gene + 149851 149924 74 Locate
rpl23 gene + 150033 150314 282 Locate
rpl2 gene + 150333 151817 1485 Locate
Status Available
Accession NC_066022.1
Length 151,909 bp
GC content 38.5%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 16 Ribosomal Protein 25 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources