Betonica alopecuros chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP103299.1 · 1–75 bp · −
psbA · PP103299.1 · 443–1,501 bp · −
trnK-UUU · PP103299.1 · 1,732–4,324 bp · −
matK · PP103299.1 · 2,037–3,572 bp · −
rps16 · PP103299.1 · 5,247–6,387 bp · −
trnQ-UUG · PP103299.1 · 7,087–7,158 bp · −
trnS-GCU · PP103299.1 · 8,298–8,385 bp · −
atpA · PP103299.1 · 10,199–11,722 bp · −
atpF · PP103299.1 · 11,810–13,030 bp · −
atpH · PP103299.1 · 13,388–13,633 bp · −
atpI · PP103299.1 · 14,527–15,270 bp · −
rps2 · PP103299.1 · 15,503–16,213 bp · −
rpoC2 · PP103299.1 · 16,441–20,625 bp · −
rpoC1 · PP103299.1 · 20,792–23,629 bp · −
rpoB · PP103299.1 · 23,656–26,868 bp · −
psbM · PP103299.1 · 29,750–29,854 bp · −
trnD-GUC · PP103299.1 · 30,375–30,451 bp · −
trnY-GUA · PP103299.1 · 30,565–30,650 bp · −
trnE-UUC · PP103299.1 · 30,709–30,781 bp · −
trnS-UGA · PP103299.1 · 35,328–35,420 bp · −
trnM-CAU · PP103299.1 · 36,374–36,448 bp · −
rps14 · PP103299.1 · 36,598–36,900 bp · −
psaB · PP103299.1 · 37,028–39,232 bp · −
psaA · PP103299.1 · 39,258–41,510 bp · −
ycf3 · PP103299.1 · 42,231–44,179 bp · −
rps4 · PP103299.1 · 44,889–45,494 bp · −
trnT-UGU · PP103299.1 · 45,903–45,977 bp · −
ndhJ · PP103299.1 · 48,262–48,738 bp · −
ndhK · PP103299.1 · 48,839–49,516 bp · −
ndhC · PP103299.1 · 49,570–49,932 bp · −
trnV · PP103299.1 · 50,900–51,557 bp · −
atpE · PP103299.1 · 52,026–52,427 bp · −
atpB · PP103299.1 · 52,448–53,920 bp · −
psbJ · PP103299.1 · 63,326–63,448 bp · −
psbL · PP103299.1 · 63,586–63,702 bp · −
psbF · PP103299.1 · 63,726–63,845 bp · −
psbE · PP103299.1 · 63,860–64,111 bp · −
trnW-CCA · PP103299.1 · 65,550–65,623 bp · −
trnP-UGG · PP103299.1 · 65,793–65,868 bp · −
rpl20 · PP103299.1 · 67,606–67,992 bp · −
rps12 · PP103299.1 · 68,742–68,855 bp · −
rps12 · PP103299.1 · 96,058–96,851 bp · −
clpP1 · PP103299.1 · 68,981–70,848 bp · −
psbN · PP103299.1 · 73,196–73,327 bp · −
rpoA · PP103299.1 · 76,717–77,730 bp · −
rps11 · PP103299.1 · 77,802–78,233 bp · −
rpl36 · PP103299.1 · 78,321–78,434 bp · −
infA · PP103299.1 · 78,530–78,763 bp · −
rps8 · PP103299.1 · 78,887–79,300 bp · −
rpl14 · PP103299.1 · 79,474–79,842 bp · −
rpl16 · PP103299.1 · 79,969–81,266 bp · −
rps3 · PP103299.1 · 81,412–82,074 bp · −
rpl22 · PP103299.1 · 82,059–82,523 bp · −
rps19 · PP103299.1 · 82,581–82,859 bp · −
rpl2 · PP103299.1 · 82,912–84,403 bp · −
rpl23 · PP103299.1 · 84,422–84,703 bp · −
trnM-CAU · PP103299.1 · 84,868–84,942 bp · −
trnL-CAA · PP103299.1 · 92,425–92,507 bp · −
ndhB · PP103299.1 · 93,051–95,262 bp · −
rps7 · PP103299.1 · 95,537–96,004 bp · −
trnN-GUU · PP103299.1 · 106,950–107,023 bp · −
ndhF · PP103299.1 · 108,422–110,644 bp · −
ndhD · PP103299.1 · 113,367–114,869 bp · −
psaC · PP103299.1 · 114,987–115,232 bp · −
ndhE · PP103299.1 · 115,485–115,787 bp · −
ndhG · PP103299.1 · 116,002–116,532 bp · −
ndhI · PP103299.1 · 116,898–117,404 bp · −
ndhA · PP103299.1 · 117,485–119,645 bp · −
ndhH · PP103299.1 · 119,647–120,828 bp · −
rps15 · PP103299.1 · 120,929–121,201 bp · −
ycf1 · PP103299.1 · 121,585–127,104 bp · −
trnR-ACG · PP103299.1 · 128,076–128,150 bp · −
rrn5 · PP103299.1 · 128,385–128,505 bp · −
rrn4.5 · PP103299.1 · 128,761–128,863 bp · −
rrn23 · PP103299.1 · 128,962–131,773 bp · −
trnA-UGC · PP103299.1 · 131,965–132,843 bp · −
trnI · PP103299.1 · 132,908–133,915 bp · −
rrn16 · PP103299.1 · 134,205–135,695 bp · −
trnV-GAC · PP103299.1 · 135,923–135,994 bp · −
ycf15 · PP103299.1 · 142,297–142,494 bp · −
ycf2 · PP103299.1 · 142,593–149,432 bp · −
psbK · PP103299.1 · 7,495–7,680 bp · +
psbI · PP103299.1 · 8,065–8,175 bp · +
trnG-UCC · PP103299.1 · 9,114–9,865 bp · +
trnR-UCU · PP103299.1 · 10,031–10,102 bp · +
trnC-GCA · PP103299.1 · 27,970–28,040 bp · +
petN · PP103299.1 · 28,884–28,973 bp · +
trnT-GGU · PP103299.1 · 31,366–31,439 bp · +
psbD · PP103299.1 · 32,660–33,721 bp · +
psbC · PP103299.1 · 33,669–35,090 bp · +
psbZ · PP103299.1 · 35,741–35,929 bp · +
trnG-GCC · PP103299.1 · 36,158–36,229 bp · +
trnS-GGA · PP103299.1 · 44,523–44,609 bp · +
trnL-UAA · PP103299.1 · 46,668–47,239 bp · +
trnF-GAA · PP103299.1 · 47,521–47,594 bp · +
trnM-CAU · PP103299.1 · 51,746–51,818 bp · +
rbcL · PP103299.1 · 54,707–56,173 bp · +
accD · PP103299.1 · 56,787–58,241 bp · +
psaI · PP103299.1 · 58,926–59,036 bp · +
ycf4 · PP103299.1 · 59,469–60,023 bp · +
cemA · PP103299.1 · 60,397–61,086 bp · +
petA · PP103299.1 · 61,303–62,265 bp · +
petL · PP103299.1 · 65,040–65,135 bp · +
petG · PP103299.1 · 65,311–65,424 bp · +
psaJ · PP103299.1 · 66,134–66,268 bp · +
rpl33 · PP103299.1 · 66,737–66,937 bp · +
rps18 · PP103299.1 · 67,084–67,389 bp · +
rps12 · PP103299.1 · 137,611–138,404 bp · +
psbB · PP103299.1 · 71,311–72,837 bp · +
psbT · PP103299.1 · 73,021–73,122 bp · +
psbH · PP103299.1 · 73,431–73,652 bp · +
petB · PP103299.1 · 73,777–75,148 bp · +
petD · PP103299.1 · 75,343–76,554 bp · +
ycf2 · PP103299.1 · 85,030–91,869 bp · +
ycf15 · PP103299.1 · 91,968–92,165 bp · +
trnV-GAC · PP103299.1 · 98,468–98,539 bp · +
rrn16 · PP103299.1 · 98,767–100,257 bp · +
trnI · PP103299.1 · 100,547–101,554 bp · +
trnA-UGC · PP103299.1 · 101,619–102,497 bp · +
rrn23 · PP103299.1 · 102,689–105,500 bp · +
rrn4.5 · PP103299.1 · 105,599–105,701 bp · +
rrn5 · PP103299.1 · 105,957–106,077 bp · +
trnR-ACG · PP103299.1 · 106,312–106,386 bp · +
ycf1 · PP103299.1 · 107,358–108,476 bp · +
rpl32 · PP103299.1 · 111,149–111,325 bp · +
trnL-UAG · PP103299.1 · 112,050–112,129 bp · +
ccsA · PP103299.1 · 112,214–113,185 bp · +
trnN-GUU · PP103299.1 · 127,439–127,512 bp · +
rps7 · PP103299.1 · 138,458–138,925 bp · +
ndhB · PP103299.1 · 139,200–141,411 bp · +
trnL-CAA · PP103299.1 · 141,955–142,037 bp · +
trnM-CAU · PP103299.1 · 149,520–149,594 bp · +
rpl23 · PP103299.1 · 149,759–150,040 bp · +
rpl2 · PP103299.1 · 150,059–151,550 bp · +
rps19 · PP103299.1 · 151,603–151,644 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Betonica alopecuros
ANNOTATED PLASTOME
PP103299.1
151,644 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37911 75822 113733 151644 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 75 75 Locate
psbA gene − 443 1501 1059 Locate
trnK-UUU gene − 1732 4324 2593 Locate
matK gene − 2037 3572 1536 Locate
rps16 gene − 5247 6387 1141 Locate
trnQ-UUG gene − 7087 7158 72 Locate
psbK gene + 7495 7680 186 Locate
psbI gene + 8065 8175 111 Locate
trnS-GCU gene − 8298 8385 88 Locate
trnG-UCC gene + 9114 9865 752 Locate
trnR-UCU gene + 10031 10102 72 Locate
atpA gene − 10199 11722 1524 Locate
atpF gene − 11810 13030 1221 Locate
atpH gene − 13388 13633 246 Locate
atpI gene − 14527 15270 744 Locate
rps2 gene − 15503 16213 711 Locate
rpoC2 gene − 16441 20625 4185 Locate
rpoC1 gene − 20792 23629 2838 Locate
rpoB gene − 23656 26868 3213 Locate
trnC-GCA gene + 27970 28040 71 Locate
petN gene + 28884 28973 90 Locate
psbM gene − 29750 29854 105 Locate
trnD-GUC gene − 30375 30451 77 Locate
trnY-GUA gene − 30565 30650 86 Locate
trnE-UUC gene − 30709 30781 73 Locate
trnT-GGU gene + 31366 31439 74 Locate
psbD gene + 32660 33721 1062 Locate
psbC gene + 33669 35090 1422 Locate
trnS-UGA gene − 35328 35420 93 Locate
psbZ gene + 35741 35929 189 Locate
trnG-GCC gene + 36158 36229 72 Locate
trnM-CAU gene − 36374 36448 75 Locate
rps14 gene − 36598 36900 303 Locate
psaB gene − 37028 39232 2205 Locate
psaA gene − 39258 41510 2253 Locate
ycf3 gene − 42231 44179 1949 Locate
trnS-GGA gene + 44523 44609 87 Locate
rps4 gene − 44889 45494 606 Locate
trnT-UGU gene − 45903 45977 75 Locate
trnL-UAA gene + 46668 47239 572 Locate
trnF-GAA gene + 47521 47594 74 Locate
ndhJ gene − 48262 48738 477 Locate
ndhK gene − 48839 49516 678 Locate
ndhC gene − 49570 49932 363 Locate
trnV gene − 50900 51557 658 Locate
trnM-CAU gene + 51746 51818 73 Locate
atpE gene − 52026 52427 402 Locate
atpB gene − 52448 53920 1473 Locate
rbcL gene + 54707 56173 1467 Locate
accD gene + 56787 58241 1455 Locate
psaI gene + 58926 59036 111 Locate
ycf4 gene + 59469 60023 555 Locate
cemA gene + 60397 61086 690 Locate
petA gene + 61303 62265 963 Locate
psbJ gene − 63326 63448 123 Locate
psbL gene − 63586 63702 117 Locate
psbF gene − 63726 63845 120 Locate
psbE gene − 63860 64111 252 Locate
petL gene + 65040 65135 96 Locate
petG gene + 65311 65424 114 Locate
trnW-CCA gene − 65550 65623 74 Locate
trnP-UGG gene − 65793 65868 76 Locate
psaJ gene + 66134 66268 135 Locate
rpl33 gene + 66737 66937 201 Locate
rps18 gene + 67084 67389 306 Locate
rpl20 gene − 67606 67992 387 Locate
rps12 gene − 68742 68855 114 Locate
clpP1 gene − 68981 70848 1868 Locate
psbB gene + 71311 72837 1527 Locate
psbT gene + 73021 73122 102 Locate
psbN gene − 73196 73327 132 Locate
psbH gene + 73431 73652 222 Locate
petB gene + 73777 75148 1372 Locate
petD gene + 75343 76554 1212 Locate
rpoA gene − 76717 77730 1014 Locate
rps11 gene − 77802 78233 432 Locate
rpl36 gene − 78321 78434 114 Locate
infA gene − 78530 78763 234 Locate
rps8 gene − 78887 79300 414 Locate
rpl14 gene − 79474 79842 369 Locate
rpl16 gene − 79969 81266 1298 Locate
rps3 gene − 81412 82074 663 Locate
rpl22 gene − 82059 82523 465 Locate
rps19 gene − 82581 82859 279 Locate
rpl2 gene − 82912 84403 1492 Locate
rpl23 gene − 84422 84703 282 Locate
trnM-CAU gene − 84868 84942 75 Locate
ycf2 gene + 85030 91869 6840 Locate
ycf15 gene + 91968 92165 198 Locate
trnL-CAA gene − 92425 92507 83 Locate
ndhB gene − 93051 95262 2212 Locate
rps7 gene − 95537 96004 468 Locate
rps12 gene − 96058 96851 794 Locate
trnV-GAC gene + 98468 98539 72 Locate
rrn16 gene + 98767 100257 1491 Locate
trnI gene + 100547 101554 1008 Locate
trnA-UGC gene + 101619 102497 879 Locate
rrn23 gene + 102689 105500 2812 Locate
rrn4.5 gene + 105599 105701 103 Locate
rrn5 gene + 105957 106077 121 Locate
trnR-ACG gene + 106312 106386 75 Locate
trnN-GUU gene − 106950 107023 74 Locate
ycf1 gene + 107358 108476 1119 Locate
ndhF gene − 108422 110644 2223 Locate
rpl32 gene + 111149 111325 177 Locate
trnL-UAG gene + 112050 112129 80 Locate
ccsA gene + 112214 113185 972 Locate
ndhD gene − 113367 114869 1503 Locate
psaC gene − 114987 115232 246 Locate
ndhE gene − 115485 115787 303 Locate
ndhG gene − 116002 116532 531 Locate
ndhI gene − 116898 117404 507 Locate
ndhA gene − 117485 119645 2161 Locate
ndhH gene − 119647 120828 1182 Locate
rps15 gene − 120929 121201 273 Locate
ycf1 gene − 121585 127104 5520 Locate
trnN-GUU gene + 127439 127512 74 Locate
trnR-ACG gene − 128076 128150 75 Locate
rrn5 gene − 128385 128505 121 Locate
rrn4.5 gene − 128761 128863 103 Locate
rrn23 gene − 128962 131773 2812 Locate
trnA-UGC gene − 131965 132843 879 Locate
trnI gene − 132908 133915 1008 Locate
rrn16 gene − 134205 135695 1491 Locate
trnV-GAC gene − 135923 135994 72 Locate
rps12 gene + 137611 138404 794 Locate
rps7 gene + 138458 138925 468 Locate
ndhB gene + 139200 141411 2212 Locate
trnL-CAA gene + 141955 142037 83 Locate
ycf15 gene − 142297 142494 198 Locate
ycf2 gene − 142593 149432 6840 Locate
trnM-CAU gene + 149520 149594 75 Locate
rpl23 gene + 149759 150040 282 Locate
rpl2 gene + 150059 151550 1492 Locate
rps19 gene + 151603 151644 42 Locate
Status Available
Accession PP103299.1
Length 151,644 bp
GC content 38.4%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources