Callicarpa americana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_052696.1 · 4–78 bp · −
psbA · NC_052696.1 · 598–1,656 bp · −
matK · NC_052696.1 · 2,210–3,733 bp · −
rps16 · NC_052696.1 · 5,359–6,492 bp · −
trnQ-UUG · NC_052696.1 · 7,618–7,689 bp · −
trnS-GCU · NC_052696.1 · 8,826–8,913 bp · −
atpA · NC_052696.1 · 10,731–12,254 bp · −
atpF · NC_052696.1 · 12,331–13,578 bp · −
atpH · NC_052696.1 · 13,945–14,190 bp · −
atpI · NC_052696.1 · 15,205–15,948 bp · −
rps2 · NC_052696.1 · 16,180–16,890 bp · −
rpoC · NC_052696.1 · 17,111–21,292 bp · −
rpoC1 · NC_052696.1 · 21,447–24,272 bp · −
rpoB · NC_052696.1 · 24,299–27,511 bp · −
psbM · NC_052696.1 · 30,590–30,694 bp · −
trnD-GUC · NC_052696.1 · 31,231–31,304 bp · −
trnY-GUA · NC_052696.1 · 31,413–31,496 bp · −
trnE-UUC · NC_052696.1 · 31,556–31,628 bp · −
trnS-UGA · NC_052696.1 · 36,306–36,398 bp · −
trnfM-CAU · NC_052696.1 · 37,416–37,489 bp · −
rps14 · NC_052696.1 · 37,639–37,941 bp · −
psaB · NC_052696.1 · 38,064–40,268 bp · −
psaA · NC_052696.1 · 40,294–42,546 bp · −
ycf3 · NC_052696.1 · 43,262–45,216 bp · −
rps4 · NC_052696.1 · 46,410–47,015 bp · −
trnT-UGU · NC_052696.1 · 47,382–47,454 bp · −
ndhJ · NC_052696.1 · 49,760–50,236 bp · −
ndhK · NC_052696.1 · 50,337–51,014 bp · −
ndhC · NC_052696.1 · 51,068–51,430 bp · −
trnV-UAC · NC_052696.1 · 52,616–53,268 bp · −
atpE · NC_052696.1 · 53,730–54,131 bp · −
atpB · NC_052696.1 · 54,128–55,624 bp · −
psbJ · NC_052696.1 · 65,374–65,496 bp · −
psbL · NC_052696.1 · 65,630–65,746 bp · −
psbF · NC_052696.1 · 65,770–65,889 bp · −
psbE · NC_052696.1 · 65,904–66,155 bp · −
trnW-CCA · NC_052696.1 · 67,585–67,658 bp · −
trnP-UGG · NC_052696.1 · 67,821–67,894 bp · −
rpl20 · NC_052696.1 · 69,816–70,202 bp · −
rps12 · NC_052696.1 · 71,022–71,135 bp · −
rps12 · NC_052696.1 · 98,500–99,293 bp · −
clpP · NC_052696.1 · 71,268–73,215 bp · −
psbN · NC_052696.1 · 75,562–75,693 bp · −
rpoA · NC_052696.1 · 79,110–80,123 bp · −
rps11 · NC_052696.1 · 80,195–80,611 bp · −
rpl36 · NC_052696.1 · 80,713–80,826 bp · −
infA · NC_052696.1 · 80,922–81,155 bp · −
rps8 · NC_052696.1 · 81,280–81,684 bp · −
rpl14 · NC_052696.1 · 81,856–82,224 bp · −
rpl16 · NC_052696.1 · 82,345–83,639 bp · −
rps3 · NC_052696.1 · 83,782–84,444 bp · −
rpl22 · NC_052696.1 · 84,454–84,891 bp · −
rps19 · NC_052696.1 · 84,951–85,229 bp · −
rpl2 · NC_052696.1 · 85,285–86,776 bp · −
rpl23 · NC_052696.1 · 86,795–87,076 bp · −
trnI-CAU · NC_052696.1 · 87,242–87,315 bp · −
trnL-CAA · NC_052696.1 · 94,865–94,945 bp · −
ndhB · NC_052696.1 · 95,493–97,704 bp · −
rps7 · NC_052696.1 · 97,979–98,446 bp · −
trnN-GUU · NC_052696.1 · 109,418–109,489 bp · −
ndhF · NC_052696.1 · 110,894–113,137 bp · −
ndhD · NC_052696.1 · 116,026–117,528 bp · −
psaC · NC_052696.1 · 117,648–117,893 bp · −
ndhE · NC_052696.1 · 118,144–118,449 bp · −
ndhG · NC_052696.1 · 118,663–119,193 bp · −
ndhI · NC_052696.1 · 119,543–120,049 bp · −
ndhA · NC_052696.1 · 120,125–122,309 bp · −
ndhH · NC_052696.1 · 122,311–123,492 bp · −
rps15 · NC_052696.1 · 123,589–123,861 bp · −
ycf1 · NC_052696.1 · 124,243–129,915 bp · −
trnR-ACG · NC_052696.1 · 130,777–130,850 bp · −
rrn5 · NC_052696.1 · 131,094–131,214 bp · −
rrn4.5 · NC_052696.1 · 131,470–131,572 bp · −
rrn23 · NC_052696.1 · 131,670–134,480 bp · −
trnA-UGC · NC_052696.1 · 134,649–135,533 bp · −
trnI-GAU · NC_052696.1 · 135,598–136,618 bp · −
rrn16 · NC_052696.1 · 136,917–138,407 bp · −
trnV-GAC · NC_052696.1 · 138,653–138,724 bp · −
ycf15 · NC_052696.1 · 145,019–145,216 bp · −
ycf2 · NC_052696.1 · 145,349–152,209 bp · −
psbK · NC_052696.1 · 8,014–8,208 bp · +
psbI · NC_052696.1 · 8,598–8,708 bp · +
trnG-UCC · NC_052696.1 · 9,618–10,378 bp · +
trnR-UCU · NC_052696.1 · 10,555–10,626 bp · +
trnC-GCA · NC_052696.1 · 28,688–28,758 bp · +
petN · NC_052696.1 · 29,590–29,679 bp · +
trnT-GGU · NC_052696.1 · 32,183–32,254 bp · +
psbD · NC_052696.1 · 33,634–34,695 bp · +
psbC · NC_052696.1 · 34,643–36,064 bp · +
psbZ · NC_052696.1 · 36,728–36,916 bp · +
trnG-GCC · NC_052696.1 · 37,194–37,264 bp · +
trnS-GGA · NC_052696.1 · 46,043–46,129 bp · +
trnL-UAA · NC_052696.1 · 48,125–48,702 bp · +
trnF-GAA · NC_052696.1 · 49,039–49,111 bp · +
trnM-CAU · NC_052696.1 · 53,450–53,522 bp · +
rbcL · NC_052696.1 · 56,410–57,849 bp · +
accD · NC_052696.1 · 58,484–60,028 bp · +
psaI · NC_052696.1 · 60,744–60,854 bp · +
ycf4 · NC_052696.1 · 61,293–61,847 bp · +
cemA · NC_052696.1 · 62,495–63,184 bp · +
petA · NC_052696.1 · 63,374–64,336 bp · +
petL · NC_052696.1 · 67,078–67,173 bp · +
petG · NC_052696.1 · 67,349–67,462 bp · +
psaJ · NC_052696.1 · 68,286–68,420 bp · +
rpl33 · NC_052696.1 · 68,900–69,100 bp · +
rps18 · NC_052696.1 · 69,271–69,576 bp · +
rps12 · NC_052696.1 · 140,330–141,123 bp · +
psbB · NC_052696.1 · 73,677–75,203 bp · +
psbT · NC_052696.1 · 75,394–75,501 bp · +
psbH · NC_052696.1 · 75,781–76,020 bp · +
petB · NC_052696.1 · 76,145–77,527 bp · +
petD · NC_052696.1 · 77,716–78,933 bp · +
ycf2 · NC_052696.1 · 87,414–94,274 bp · +
ycf15 · NC_052696.1 · 94,407–94,604 bp · +
trnV-GAC · NC_052696.1 · 100,899–100,970 bp · +
rrn16 · NC_052696.1 · 101,216–102,706 bp · +
trnI-GAU · NC_052696.1 · 103,005–104,025 bp · +
trnA-UGC · NC_052696.1 · 104,090–104,974 bp · +
23S rRNA · NC_052696.1 · 105,143–107,953 bp · +
rrn4.5 · NC_052696.1 · 108,051–108,153 bp · +
rrn5 · NC_052696.1 · 108,409–108,529 bp · +
trnR-ACG · NC_052696.1 · 108,773–108,846 bp · +
rpl32 · NC_052696.1 · 113,657–113,833 bp · +
trnL · NC_052696.1 · 114,639–114,718 bp · +
ccsA · NC_052696.1 · 114,803–115,774 bp · +
trnN-GUU · NC_052696.1 · 130,134–130,205 bp · +
rps7 · NC_052696.1 · 141,177–141,644 bp · +
ndhB · NC_052696.1 · 141,919–144,130 bp · +
trnL-CAA · NC_052696.1 · 144,678–144,758 bp · +
trnI-CAU · NC_052696.1 · 152,308–152,381 bp · +
rpl23 · NC_052696.1 · 152,547–152,828 bp · +
rpl2 · NC_052696.1 · 152,847–154,338 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Callicarpa americana
ANNOTATED PLASTOME
NC_052696.1
154,433 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38608 77216 115825 154433 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC 23S rRNA rrn4.5 rrn5 trnR-ACG rpl32 trnL ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 78 75 Locate
psbA gene − 598 1656 1059 Locate
matK gene − 2210 3733 1524 Locate
rps16 gene − 5359 6492 1134 Locate
trnQ-UUG gene − 7618 7689 72 Locate
psbK gene + 8014 8208 195 Locate
psbI gene + 8598 8708 111 Locate
trnS-GCU gene − 8826 8913 88 Locate
trnG-UCC gene + 9618 10378 761 Locate
trnR-UCU gene + 10555 10626 72 Locate
atpA gene − 10731 12254 1524 Locate
atpF gene − 12331 13578 1248 Locate
atpH gene − 13945 14190 246 Locate
atpI gene − 15205 15948 744 Locate
rps2 gene − 16180 16890 711 Locate
rpoC gene − 17111 21292 4182 Locate
rpoC1 gene − 21447 24272 2826 Locate
rpoB gene − 24299 27511 3213 Locate
trnC-GCA gene + 28688 28758 71 Locate
petN gene + 29590 29679 90 Locate
psbM gene − 30590 30694 105 Locate
trnD-GUC gene − 31231 31304 74 Locate
trnY-GUA gene − 31413 31496 84 Locate
trnE-UUC gene − 31556 31628 73 Locate
trnT-GGU gene + 32183 32254 72 Locate
psbD gene + 33634 34695 1062 Locate
psbC gene + 34643 36064 1422 Locate
trnS-UGA gene − 36306 36398 93 Locate
psbZ gene + 36728 36916 189 Locate
trnG-GCC gene + 37194 37264 71 Locate
trnfM-CAU gene − 37416 37489 74 Locate
rps14 gene − 37639 37941 303 Locate
psaB gene − 38064 40268 2205 Locate
psaA gene − 40294 42546 2253 Locate
ycf3 gene − 43262 45216 1955 Locate
trnS-GGA gene + 46043 46129 87 Locate
rps4 gene − 46410 47015 606 Locate
trnT-UGU gene − 47382 47454 73 Locate
trnL-UAA gene + 48125 48702 578 Locate
trnF-GAA gene + 49039 49111 73 Locate
ndhJ gene − 49760 50236 477 Locate
ndhK gene − 50337 51014 678 Locate
ndhC gene − 51068 51430 363 Locate
trnV-UAC gene − 52616 53268 653 Locate
trnM-CAU gene + 53450 53522 73 Locate
atpE gene − 53730 54131 402 Locate
atpB gene − 54128 55624 1497 Locate
rbcL gene + 56410 57849 1440 Locate
accD gene + 58484 60028 1545 Locate
psaI gene + 60744 60854 111 Locate
ycf4 gene + 61293 61847 555 Locate
cemA gene + 62495 63184 690 Locate
petA gene + 63374 64336 963 Locate
psbJ gene − 65374 65496 123 Locate
psbL gene − 65630 65746 117 Locate
psbF gene − 65770 65889 120 Locate
psbE gene − 65904 66155 252 Locate
petL gene + 67078 67173 96 Locate
petG gene + 67349 67462 114 Locate
trnW-CCA gene − 67585 67658 74 Locate
trnP-UGG gene − 67821 67894 74 Locate
psaJ gene + 68286 68420 135 Locate
rpl33 gene + 68900 69100 201 Locate
rps18 gene + 69271 69576 306 Locate
rpl20 gene − 69816 70202 387 Locate
rps12 gene − 71022 71135 114 Locate
clpP gene − 71268 73215 1948 Locate
psbB gene + 73677 75203 1527 Locate
psbT gene + 75394 75501 108 Locate
psbN gene − 75562 75693 132 Locate
psbH gene + 75781 76020 240 Locate
petB gene + 76145 77527 1383 Locate
petD gene + 77716 78933 1218 Locate
rpoA gene − 79110 80123 1014 Locate
rps11 gene − 80195 80611 417 Locate
rpl36 gene − 80713 80826 114 Locate
infA gene − 80922 81155 234 Locate
rps8 gene − 81280 81684 405 Locate
rpl14 gene − 81856 82224 369 Locate
rpl16 gene − 82345 83639 1295 Locate
rps3 gene − 83782 84444 663 Locate
rpl22 gene − 84454 84891 438 Locate
rps19 gene − 84951 85229 279 Locate
rpl2 gene − 85285 86776 1492 Locate
rpl23 gene − 86795 87076 282 Locate
trnI-CAU gene − 87242 87315 74 Locate
ycf2 gene + 87414 94274 6861 Locate
ycf15 gene + 94407 94604 198 Locate
trnL-CAA gene − 94865 94945 81 Locate
ndhB gene − 95493 97704 2212 Locate
rps7 gene − 97979 98446 468 Locate
rps12 gene − 98500 99293 794 Locate
trnV-GAC gene + 100899 100970 72 Locate
rrn16 gene + 101216 102706 1491 Locate
trnI-GAU gene + 103005 104025 1021 Locate
trnA-UGC gene + 104090 104974 885 Locate
23S rRNA gene + 105143 107953 2811 Locate
rrn4.5 gene + 108051 108153 103 Locate
rrn5 gene + 108409 108529 121 Locate
trnR-ACG gene + 108773 108846 74 Locate
trnN-GUU gene − 109418 109489 72 Locate
ndhF gene − 110894 113137 2244 Locate
rpl32 gene + 113657 113833 177 Locate
trnL gene + 114639 114718 80 Locate
ccsA gene + 114803 115774 972 Locate
ndhD gene − 116026 117528 1503 Locate
psaC gene − 117648 117893 246 Locate
ndhE gene − 118144 118449 306 Locate
ndhG gene − 118663 119193 531 Locate
ndhI gene − 119543 120049 507 Locate
ndhA gene − 120125 122309 2185 Locate
ndhH gene − 122311 123492 1182 Locate
rps15 gene − 123589 123861 273 Locate
ycf1 gene − 124243 129915 5673 Locate
trnN-GUU gene + 130134 130205 72 Locate
trnR-ACG gene − 130777 130850 74 Locate
rrn5 gene − 131094 131214 121 Locate
rrn4.5 gene − 131470 131572 103 Locate
rrn23 gene − 131670 134480 2811 Locate
trnA-UGC gene − 134649 135533 885 Locate
trnI-GAU gene − 135598 136618 1021 Locate
rrn16 gene − 136917 138407 1491 Locate
trnV-GAC gene − 138653 138724 72 Locate
rps12 gene + 140330 141123 794 Locate
rps7 gene + 141177 141644 468 Locate
ndhB gene + 141919 144130 2212 Locate
trnL-CAA gene + 144678 144758 81 Locate
ycf15 gene − 145019 145216 198 Locate
ycf2 gene − 145349 152209 6861 Locate
trnI-CAU gene + 152308 152381 74 Locate
rpl23 gene + 152547 152828 282 Locate
rpl2 gene + 152847 154338 1492 Locate
Status Available
Accession NC_052696.1
Length 154,433 bp
GC content 38.1%
Annotated genes 131
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 7
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources