Callicarpa longifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_084175.1 · 4–78 bp · −
psbA · NC_084175.1 · 436–1,494 bp · −
trnK-UUU · NC_084175.1 · 1,749–4,320 bp · −
matK · NC_084175.1 · 2,055–3,578 bp · −
rps16 · NC_084175.1 · 5,181–6,314 bp · −
trnQ-UUG · NC_084175.1 · 7,457–7,528 bp · −
trnS-GCU · NC_084175.1 · 8,665–8,752 bp · −
trnR-UCU · NC_084175.1 · 10,397–10,468 bp · −
atpA · NC_084175.1 · 10,573–12,096 bp · −
atpF · NC_084175.1 · 12,164–13,411 bp · −
atpH · NC_084175.1 · 13,779–14,024 bp · −
atpI · NC_084175.1 · 15,040–15,783 bp · −
rps2 · NC_084175.1 · 16,014–16,724 bp · −
rpoC2 · NC_084175.1 · 16,940–21,109 bp · −
rpoC1 · NC_084175.1 · 21,276–24,101 bp · −
rpoB · NC_084175.1 · 24,128–27,340 bp · −
psbM · NC_084175.1 · 30,418–30,522 bp · −
trnD-GUC · NC_084175.1 · 31,044–31,117 bp · −
trnY-GUA · NC_084175.1 · 31,226–31,309 bp · −
trnE-UUC · NC_084175.1 · 31,369–31,441 bp · −
trnS-UGA · NC_084175.1 · 36,121–36,213 bp · −
rps14 · NC_084175.1 · 37,452–37,754 bp · −
psaB · NC_084175.1 · 37,877–40,081 bp · −
psaA · NC_084175.1 · 40,107–42,359 bp · −
pafI · NC_084175.1 · 43,073–45,027 bp · −
rps4 · NC_084175.1 · 46,230–46,835 bp · −
trnT-UGU · NC_084175.1 · 47,202–47,274 bp · −
ndhJ · NC_084175.1 · 49,606–50,082 bp · −
ndhK · NC_084175.1 · 50,183–50,923 bp · −
ndhC · NC_084175.1 · 50,914–51,276 bp · −
trnV-UAC · NC_084175.1 · 52,467–53,119 bp · −
atpE · NC_084175.1 · 53,581–53,982 bp · −
atpB · NC_084175.1 · 53,979–55,475 bp · −
psbJ · NC_084175.1 · 65,111–65,233 bp · −
psbL · NC_084175.1 · 65,367–65,483 bp · −
psbF · NC_084175.1 · 65,507–65,626 bp · −
psbE · NC_084175.1 · 65,641–65,892 bp · −
trnW-CCA · NC_084175.1 · 67,329–67,402 bp · −
trnP-UGG · NC_084175.1 · 67,565–67,638 bp · −
rpl20 · NC_084175.1 · 69,556–69,942 bp · −
rps12 · NC_084175.1 · 70,763–70,873 bp · −
rps12 · NC_084175.1 · 98,244–99,037 bp · −
clpP1 · NC_084175.1 · 71,007–72,954 bp · −
pbf1 · NC_084175.1 · 75,303–75,434 bp · −
rpoA · NC_084175.1 · 78,845–79,858 bp · −
rps11 · NC_084175.1 · 79,930–80,346 bp · −
rpl36 · NC_084175.1 · 80,448–80,561 bp · −
infA · NC_084175.1 · 80,657–80,890 bp · −
rps8 · NC_084175.1 · 81,015–81,419 bp · −
rpl14 · NC_084175.1 · 81,592–81,960 bp · −
rpl16 · NC_084175.1 · 82,087–83,383 bp · −
rps3 · NC_084175.1 · 83,526–84,188 bp · −
rpl22 · NC_084175.1 · 84,198–84,635 bp · −
rps19 · NC_084175.1 · 84,695–84,973 bp · −
rpl2 · NC_084175.1 · 85,029–86,520 bp · −
rpl23 · NC_084175.1 · 86,539–86,820 bp · −
trnI-CAU · NC_084175.1 · 86,986–87,059 bp · −
trnL-CAA · NC_084175.1 · 94,609–94,689 bp · −
ndhB · NC_084175.1 · 95,237–97,448 bp · −
rps7 · NC_084175.1 · 97,723–98,190 bp · −
trnN-GUU · NC_084175.1 · 109,162–109,233 bp · −
ndhF · NC_084175.1 · 110,651–112,894 bp · −
ndhD · NC_084175.1 · 115,774–117,276 bp · −
psaC · NC_084175.1 · 117,397–117,642 bp · −
ndhE · NC_084175.1 · 117,893–118,198 bp · −
ndhG · NC_084175.1 · 118,412–118,942 bp · −
ndhI · NC_084175.1 · 119,291–119,797 bp · −
ndhA · NC_084175.1 · 119,873–122,049 bp · −
ndhH · NC_084175.1 · 122,051–123,232 bp · −
rps15 · NC_084175.1 · 123,329–123,601 bp · −
ycf1 · NC_084175.1 · 123,983–129,574 bp · −
trnR-ACG · NC_084175.1 · 130,545–130,618 bp · −
rrn5 · NC_084175.1 · 130,862–130,982 bp · −
rrn4.5 · NC_084175.1 · 131,238–131,340 bp · −
rrn23 · NC_084175.1 · 131,438–134,248 bp · −
trnA-UGC · NC_084175.1 · 134,417–135,302 bp · −
trnI-GAU · NC_084175.1 · 135,367–136,387 bp · −
rrn16 · NC_084175.1 · 136,686–138,176 bp · −
trnV-GAC · NC_084175.1 · 138,422–138,493 bp · −
ycf2 · NC_084175.1 · 145,119–151,979 bp · −
psbK · NC_084175.1 · 7,862–8,047 bp · +
psbI · NC_084175.1 · 8,437–8,547 bp · +
trnG-UCC · NC_084175.1 · 9,460–10,219 bp · +
trnC-GCA · NC_084175.1 · 28,516–28,586 bp · +
petN · NC_084175.1 · 29,418–29,507 bp · +
trnT-GGU · NC_084175.1 · 31,998–32,069 bp · +
psbD · NC_084175.1 · 33,449–34,510 bp · +
psbC · NC_084175.1 · 34,494–35,879 bp · +
psbZ · NC_084175.1 · 36,543–36,731 bp · +
trnG-GCC · NC_084175.1 · 37,007–37,077 bp · +
trnS-GGA · NC_084175.1 · 45,863–45,949 bp · +
trnL-UAA · NC_084175.1 · 47,972–48,544 bp · +
trnF-GAA · NC_084175.1 · 48,886–48,958 bp · +
trnM-CAU · NC_084175.1 · 53,301–53,373 bp · +
rbcL · NC_084175.1 · 56,261–57,700 bp · +
accD · NC_084175.1 · 58,387–59,880 bp · +
psaI · NC_084175.1 · 60,582–60,692 bp · +
pafII · NC_084175.1 · 61,131–61,685 bp · +
cemA · NC_084175.1 · 62,333–63,022 bp · +
petA · NC_084175.1 · 63,212–64,174 bp · +
petL · NC_084175.1 · 66,823–66,918 bp · +
petG · NC_084175.1 · 67,093–67,206 bp · +
psaJ · NC_084175.1 · 68,030–68,164 bp · +
rpl33 · NC_084175.1 · 68,644–68,844 bp · +
rps18 · NC_084175.1 · 69,015–69,320 bp · +
rps12 · NC_084175.1 · 140,100–140,893 bp · +
psbB · NC_084175.1 · 73,416–74,942 bp · +
psbT · NC_084175.1 · 75,135–75,242 bp · +
psbH · NC_084175.1 · 75,540–75,761 bp · +
petB · NC_084175.1 · 75,886–77,263 bp · +
petD · NC_084175.1 · 77,452–78,668 bp · +
ycf2 · NC_084175.1 · 87,158–94,018 bp · +
trnV-GAC · NC_084175.1 · 100,644–100,715 bp · +
rrn16 · NC_084175.1 · 100,961–102,451 bp · +
trnI-GAU · NC_084175.1 · 102,750–103,770 bp · +
trnA-UGC · NC_084175.1 · 103,835–104,720 bp · +
rrn4.5 · NC_084175.1 · 107,797–107,899 bp · +
rrn5 · NC_084175.1 · 108,155–108,275 bp · +
trnR-ACG · NC_084175.1 · 108,519–108,592 bp · +
ycf1 · NC_084175.1 · 109,563–110,648 bp · +
rpl32 · NC_084175.1 · 113,414–113,590 bp · +
trnL-UAG · NC_084175.1 · 114,373–114,452 bp · +
ccsA · NC_084175.1 · 114,536–115,507 bp · +
trnN-GUU · NC_084175.1 · 129,904–129,975 bp · +
rps7 · NC_084175.1 · 140,947–141,414 bp · +
ndhB · NC_084175.1 · 141,689–143,900 bp · +
trnL-CAA · NC_084175.1 · 144,448–144,528 bp · +
trnI-CAU · NC_084175.1 · 152,078–152,151 bp · +
rpl23 · NC_084175.1 · 152,317–152,598 bp · +
rpl2 · NC_084175.1 · 152,617–154,108 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Callicarpa longifolia
ANNOTATED PLASTOME
NC_084175.1
154,203 bp · 129 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38551 77102 115652 154203 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU trnR-UCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
130 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 78 75 Locate
psbA gene − 436 1494 1059 Locate
trnK-UUU gene − 1749 4320 2572 Locate
matK gene − 2055 3578 1524 Locate
rps16 gene − 5181 6314 1134 Locate
trnQ-UUG gene − 7457 7528 72 Locate
psbK gene + 7862 8047 186 Locate
psbI gene + 8437 8547 111 Locate
trnS-GCU gene − 8665 8752 88 Locate
trnG-UCC gene + 9460 10219 760 Locate
trnR-UCU gene − 10397 10468 72 Locate
atpA gene − 10573 12096 1524 Locate
atpF gene − 12164 13411 1248 Locate
atpH gene − 13779 14024 246 Locate
atpI gene − 15040 15783 744 Locate
rps2 gene − 16014 16724 711 Locate
rpoC2 gene − 16940 21109 4170 Locate
rpoC1 gene − 21276 24101 2826 Locate
rpoB gene − 24128 27340 3213 Locate
trnC-GCA gene + 28516 28586 71 Locate
petN gene + 29418 29507 90 Locate
psbM gene − 30418 30522 105 Locate
trnD-GUC gene − 31044 31117 74 Locate
trnY-GUA gene − 31226 31309 84 Locate
trnE-UUC gene − 31369 31441 73 Locate
trnT-GGU gene + 31998 32069 72 Locate
psbD gene + 33449 34510 1062 Locate
psbC gene + 34494 35879 1386 Locate
trnS-UGA gene − 36121 36213 93 Locate
psbZ gene + 36543 36731 189 Locate
trnG-GCC gene + 37007 37077 71 Locate
rps14 gene − 37452 37754 303 Locate
psaB gene − 37877 40081 2205 Locate
psaA gene − 40107 42359 2253 Locate
pafI gene − 43073 45027 1955 Locate
trnS-GGA gene + 45863 45949 87 Locate
rps4 gene − 46230 46835 606 Locate
trnT-UGU gene − 47202 47274 73 Locate
trnL-UAA gene + 47972 48544 573 Locate
trnF-GAA gene + 48886 48958 73 Locate
ndhJ gene − 49606 50082 477 Locate
ndhK gene − 50183 50923 741 Locate
ndhC gene − 50914 51276 363 Locate
trnV-UAC gene − 52467 53119 653 Locate
trnM-CAU gene + 53301 53373 73 Locate
atpE gene − 53581 53982 402 Locate
atpB gene − 53979 55475 1497 Locate
rbcL gene + 56261 57700 1440 Locate
accD gene + 58387 59880 1494 Locate
psaI gene + 60582 60692 111 Locate
pafII gene + 61131 61685 555 Locate
cemA gene + 62333 63022 690 Locate
petA gene + 63212 64174 963 Locate
psbJ gene − 65111 65233 123 Locate
psbL gene − 65367 65483 117 Locate
psbF gene − 65507 65626 120 Locate
psbE gene − 65641 65892 252 Locate
petL gene + 66823 66918 96 Locate
petG gene + 67093 67206 114 Locate
trnW-CCA gene − 67329 67402 74 Locate
trnP-UGG gene − 67565 67638 74 Locate
psaJ gene + 68030 68164 135 Locate
rpl33 gene + 68644 68844 201 Locate
rps18 gene + 69015 69320 306 Locate
rpl20 gene − 69556 69942 387 Locate
rps12 gene − 70763 70873 111 Locate
clpP1 gene − 71007 72954 1948 Locate
psbB gene + 73416 74942 1527 Locate
psbT gene + 75135 75242 108 Locate
pbf1 gene − 75303 75434 132 Locate
psbH gene + 75540 75761 222 Locate
petB gene + 75886 77263 1378 Locate
petD gene + 77452 78668 1217 Locate
rpoA gene − 78845 79858 1014 Locate
rps11 gene − 79930 80346 417 Locate
rpl36 gene − 80448 80561 114 Locate
infA gene − 80657 80890 234 Locate
rps8 gene − 81015 81419 405 Locate
rpl14 gene − 81592 81960 369 Locate
rpl16 gene − 82087 83383 1297 Locate
rps3 gene − 83526 84188 663 Locate
rpl22 gene − 84198 84635 438 Locate
rps19 gene − 84695 84973 279 Locate
rpl2 gene − 85029 86520 1492 Locate
rpl23 gene − 86539 86820 282 Locate
trnI-CAU gene − 86986 87059 74 Locate
ycf2 gene + 87158 94018 6861 Locate
trnL-CAA gene − 94609 94689 81 Locate
ndhB gene − 95237 97448 2212 Locate
rps7 gene − 97723 98190 468 Locate
rps12 gene − 98244 99037 794 Locate
trnV-GAC gene + 100644 100715 72 Locate
rrn16 gene + 100961 102451 1491 Locate
trnI-GAU gene + 102750 103770 1021 Locate
trnA-UGC gene + 103835 104720 886 Locate
rrn4.5 gene + 107797 107899 103 Locate
rrn5 gene + 108155 108275 121 Locate
trnR-ACG gene + 108519 108592 74 Locate
trnN-GUU gene − 109162 109233 72 Locate
ycf1 gene + 109563 110648 1086 Locate
ndhF gene − 110651 112894 2244 Locate
rpl32 gene + 113414 113590 177 Locate
trnL-UAG gene + 114373 114452 80 Locate
ccsA gene + 114536 115507 972 Locate
ndhD gene − 115774 117276 1503 Locate
psaC gene − 117397 117642 246 Locate
ndhE gene − 117893 118198 306 Locate
ndhG gene − 118412 118942 531 Locate
ndhI gene − 119291 119797 507 Locate
ndhA gene − 119873 122049 2177 Locate
ndhH gene − 122051 123232 1182 Locate
rps15 gene − 123329 123601 273 Locate
ycf1 gene − 123983 129574 5592 Locate
trnN-GUU gene + 129904 129975 72 Locate
trnR-ACG gene − 130545 130618 74 Locate
rrn5 gene − 130862 130982 121 Locate
rrn4.5 gene − 131238 131340 103 Locate
rrn23 gene − 131438 134248 2811 Locate
trnA-UGC gene − 134417 135302 886 Locate
trnI-GAU gene − 135367 136387 1021 Locate
rrn16 gene − 136686 138176 1491 Locate
trnV-GAC gene − 138422 138493 72 Locate
rps12 gene + 140100 140893 794 Locate
rps7 gene + 140947 141414 468 Locate
ndhB gene + 141689 143900 2212 Locate
trnL-CAA gene + 144448 144528 81 Locate
ycf2 gene − 145119 151979 6861 Locate
trnI-CAU gene + 152078 152151 74 Locate
rpl23 gene + 152317 152598 282 Locate
rpl2 gene + 152617 154108 1492 Locate
Status Available
Accession NC_084175.1
Length 154,203 bp
GC content 38.1%
Annotated genes 129
Gene sequence records 8
Translation Rna 36 Photosystem Ii 14 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 7
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources