Callicarpa longissima chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_088747.1 · 4–77 bp · −
psbA · NC_088747.1 · 440–1,498 bp · −
trnK-UUU · NC_088747.1 · 1,751–4,323 bp · −
matK · NC_088747.1 · 2,058–3,581 bp · −
rps16 · NC_088747.1 · 5,187–6,320 bp · −
trnQ-UUG · NC_088747.1 · 7,462–7,533 bp · −
trnS-GCU · NC_088747.1 · 8,670–8,757 bp · −
atpA · NC_088747.1 · 10,579–12,102 bp · −
atpF · NC_088747.1 · 12,170–13,416 bp · −
atpH · NC_088747.1 · 13,785–14,030 bp · −
atpI · NC_088747.1 · 15,046–15,789 bp · −
rps2 · NC_088747.1 · 16,020–16,730 bp · −
rpoC2 · NC_088747.1 · 16,947–21,128 bp · −
rpoC1 · NC_088747.1 · 21,283–24,108 bp · −
rpoB · NC_088747.1 · 24,135–27,347 bp · −
psbM · NC_088747.1 · 30,414–30,518 bp · −
trnD-GUC · NC_088747.1 · 31,055–31,128 bp · −
trnY-GUA · NC_088747.1 · 31,237–31,320 bp · −
trnE-UUC · NC_088747.1 · 31,380–31,452 bp · −
trnS-UGA · NC_088747.1 · 36,132–36,224 bp · −
trnM-CAU · NC_088747.1 · 37,240–37,313 bp · −
rps14 · NC_088747.1 · 37,463–37,765 bp · −
psaB · NC_088747.1 · 37,890–40,094 bp · −
psaA · NC_088747.1 · 40,120–42,372 bp · −
ycf3 · NC_088747.1 · 43,087–45,040 bp · −
rps4 · NC_088747.1 · 46,242–46,847 bp · −
trnT-UGU · NC_088747.1 · 47,218–47,290 bp · −
ndhJ · NC_088747.1 · 49,599–50,075 bp · −
ndhK · NC_088747.1 · 50,176–50,853 bp · −
ndhC · NC_088747.1 · 50,907–51,269 bp · −
atpE · NC_088747.1 · 53,567–53,968 bp · −
atpB · NC_088747.1 · 53,965–55,461 bp · −
psbJ · NC_088747.1 · 65,096–65,218 bp · −
psbL · NC_088747.1 · 65,352–65,468 bp · −
psbF · NC_088747.1 · 65,492–65,611 bp · −
psbE · NC_088747.1 · 65,626–65,877 bp · −
trnW-CCA · NC_088747.1 · 67,315–67,388 bp · −
trnP-UGG · NC_088747.1 · 67,551–67,624 bp · −
rpl20 · NC_088747.1 · 69,542–69,928 bp · −
rps12 · NC_088747.1 · 70,748–70,861 bp · −
rps12 · NC_088747.1 · 98,228–99,021 bp · −
clpP · NC_088747.1 · 70,994–72,941 bp · −
psbN · NC_088747.1 · 75,290–75,421 bp · −
rpoA · NC_088747.1 · 78,831–79,844 bp · −
rps11 · NC_088747.1 · 79,916–80,332 bp · −
rpl36 · NC_088747.1 · 80,434–80,547 bp · −
infA · NC_088747.1 · 80,643–80,876 bp · −
rps8 · NC_088747.1 · 81,001–81,405 bp · −
rpl14 · NC_088747.1 · 81,577–81,945 bp · −
rpl16 · NC_088747.1 · 82,072–83,367 bp · −
rps3 · NC_088747.1 · 83,510–84,172 bp · −
rpl22 · NC_088747.1 · 84,182–84,619 bp · −
rps19 · NC_088747.1 · 84,679–84,957 bp · −
rpl2 · NC_088747.1 · 85,013–86,504 bp · −
rpl23 · NC_088747.1 · 86,523–86,804 bp · −
trnM-CAU · NC_088747.1 · 86,970–87,043 bp · −
trnL-CAA · NC_088747.1 · 94,593–94,673 bp · −
ndhB · NC_088747.1 · 95,221–97,432 bp · −
rps7 · NC_088747.1 · 97,707–98,174 bp · −
trnN-GUU · NC_088747.1 · 109,146–109,217 bp · −
ndhF · NC_088747.1 · 110,622–112,865 bp · −
ndhD · NC_088747.1 · 115,747–117,246 bp · −
psaC · NC_088747.1 · 117,370–117,615 bp · −
ndhE · NC_088747.1 · 117,866–118,171 bp · −
ndhG · NC_088747.1 · 118,385–118,915 bp · −
ndhI · NC_088747.1 · 119,264–119,770 bp · −
ndhA · NC_088747.1 · 119,846–122,031 bp · −
ndhH · NC_088747.1 · 122,033–123,214 bp · −
rps15 · NC_088747.1 · 123,311–123,583 bp · −
ycf1 · NC_088747.1 · 123,965–129,529 bp · −
trnR-ACG · NC_088747.1 · 130,500–130,573 bp · −
rrn5S · NC_088747.1 · 130,817–130,937 bp · −
rrn4.5S · NC_088747.1 · 131,193–131,295 bp · −
rrn23S · NC_088747.1 · 131,393–134,203 bp · −
trnA-UGC · NC_088747.1 · 134,372–135,257 bp · −
trnE-UUC · NC_088747.1 · 135,322–136,342 bp · −
rrn16S · NC_088747.1 · 136,641–138,131 bp · −
trnV-GAC · NC_088747.1 · 138,377–138,448 bp · −
ycf15 · NC_088747.1 · 144,744–144,941 bp · −
ycf2 · NC_088747.1 · 145,074–151,934 bp · −
psbK · NC_088747.1 · 7,867–8,052 bp · +
psbI · NC_088747.1 · 8,442–8,552 bp · +
trnS-CGA · NC_088747.1 · 9,465–10,226 bp · +
trnR-UCU · NC_088747.1 · 10,403–10,474 bp · +
trnC-GCA · NC_088747.1 · 28,523–28,593 bp · +
petN · NC_088747.1 · 29,425–29,514 bp · +
trnT-GGU · NC_088747.1 · 32,009–32,080 bp · +
psbD · NC_088747.1 · 33,460–34,521 bp · +
psbC · NC_088747.1 · 34,469–35,890 bp · +
psbZ · NC_088747.1 · 36,554–36,742 bp · +
trnG-GCC · NC_088747.1 · 37,018–37,088 bp · +
trnS-GGA · NC_088747.1 · 45,875–45,961 bp · +
trnL-UAA · NC_088747.1 · 47,963–48,535 bp · +
trnF-GAA · NC_088747.1 · 48,877–48,949 bp · +
trnM-CAU · NC_088747.1 · 53,287–53,359 bp · +
rbcL · NC_088747.1 · 56,247–57,686 bp · +
accD · NC_088747.1 · 58,372–59,865 bp · +
psaI · NC_088747.1 · 60,567–60,677 bp · +
ycf4 · NC_088747.1 · 61,116–61,670 bp · +
cemA · NC_088747.1 · 62,318–63,007 bp · +
petA · NC_088747.1 · 63,197–64,159 bp · +
petL · NC_088747.1 · 66,808–66,903 bp · +
petG · NC_088747.1 · 67,079–67,192 bp · +
psaJ · NC_088747.1 · 68,016–68,150 bp · +
rpl33 · NC_088747.1 · 68,630–68,830 bp · +
rps18 · NC_088747.1 · 69,001–69,306 bp · +
rps12 · NC_088747.1 · 140,055–140,848 bp · +
psbB · NC_088747.1 · 73,403–74,929 bp · +
psbT · NC_088747.1 · 75,122–75,229 bp · +
psbH · NC_088747.1 · 75,527–75,748 bp · +
petB · NC_088747.1 · 75,873–77,249 bp · +
petD · NC_088747.1 · 77,438–78,654 bp · +
ycf2 · NC_088747.1 · 87,142–94,002 bp · +
ycf15 · NC_088747.1 · 94,135–94,332 bp · +
trnV-GAC · NC_088747.1 · 100,628–100,699 bp · +
rrn16S · NC_088747.1 · 100,945–102,435 bp · +
trnE-UUC · NC_088747.1 · 102,734–103,754 bp · +
trnA-UGC · NC_088747.1 · 103,819–104,704 bp · +
rrn23S · NC_088747.1 · 104,873–107,683 bp · +
rrn4.5S · NC_088747.1 · 107,781–107,883 bp · +
rrn5S · NC_088747.1 · 108,139–108,259 bp · +
trnR-ACG · NC_088747.1 · 108,503–108,576 bp · +
rpl32 · NC_088747.1 · 113,385–113,561 bp · +
trnL-UAG · NC_088747.1 · 114,345–114,424 bp · +
ccsA · NC_088747.1 · 114,509–115,480 bp · +
trnN-GUU · NC_088747.1 · 129,859–129,930 bp · +
rps7 · NC_088747.1 · 140,902–141,369 bp · +
ndhB · NC_088747.1 · 141,644–143,855 bp · +
trnL-CAA · NC_088747.1 · 144,403–144,483 bp · +
trnM-CAU · NC_088747.1 · 152,033–152,106 bp · +
rpl23 · NC_088747.1 · 152,272–152,553 bp · +
rpl2 · NC_088747.1 · 152,572–154,063 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Callicarpa longissima
ANNOTATED PLASTOME
NC_088747.1
154,158 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38540 77079 115618 154158 bp
Forward strand 5′ → 3′
psbK psbI trnS-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnE-UUC trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnE-UUC rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 440 1498 1059 Locate
trnK-UUU gene − 1751 4323 2573 Locate
matK gene − 2058 3581 1524 Locate
rps16 gene − 5187 6320 1134 Locate
trnQ-UUG gene − 7462 7533 72 Locate
psbK gene + 7867 8052 186 Locate
psbI gene + 8442 8552 111 Locate
trnS-GCU gene − 8670 8757 88 Locate
trnS-CGA gene + 9465 10226 762 Locate
trnR-UCU gene + 10403 10474 72 Locate
atpA gene − 10579 12102 1524 Locate
atpF gene − 12170 13416 1247 Locate
atpH gene − 13785 14030 246 Locate
atpI gene − 15046 15789 744 Locate
rps2 gene − 16020 16730 711 Locate
rpoC2 gene − 16947 21128 4182 Locate
rpoC1 gene − 21283 24108 2826 Locate
rpoB gene − 24135 27347 3213 Locate
trnC-GCA gene + 28523 28593 71 Locate
petN gene + 29425 29514 90 Locate
psbM gene − 30414 30518 105 Locate
trnD-GUC gene − 31055 31128 74 Locate
trnY-GUA gene − 31237 31320 84 Locate
trnE-UUC gene − 31380 31452 73 Locate
trnT-GGU gene + 32009 32080 72 Locate
psbD gene + 33460 34521 1062 Locate
psbC gene + 34469 35890 1422 Locate
trnS-UGA gene − 36132 36224 93 Locate
psbZ gene + 36554 36742 189 Locate
trnG-GCC gene + 37018 37088 71 Locate
trnM-CAU gene − 37240 37313 74 Locate
rps14 gene − 37463 37765 303 Locate
psaB gene − 37890 40094 2205 Locate
psaA gene − 40120 42372 2253 Locate
ycf3 gene − 43087 45040 1954 Locate
trnS-GGA gene + 45875 45961 87 Locate
rps4 gene − 46242 46847 606 Locate
trnT-UGU gene − 47218 47290 73 Locate
trnL-UAA gene + 47963 48535 573 Locate
trnF-GAA gene + 48877 48949 73 Locate
ndhJ gene − 49599 50075 477 Locate
ndhK gene − 50176 50853 678 Locate
ndhC gene − 50907 51269 363 Locate
trnM-CAU gene + 53287 53359 73 Locate
atpE gene − 53567 53968 402 Locate
atpB gene − 53965 55461 1497 Locate
rbcL gene + 56247 57686 1440 Locate
accD gene + 58372 59865 1494 Locate
psaI gene + 60567 60677 111 Locate
ycf4 gene + 61116 61670 555 Locate
cemA gene + 62318 63007 690 Locate
petA gene + 63197 64159 963 Locate
psbJ gene − 65096 65218 123 Locate
psbL gene − 65352 65468 117 Locate
psbF gene − 65492 65611 120 Locate
psbE gene − 65626 65877 252 Locate
petL gene + 66808 66903 96 Locate
petG gene + 67079 67192 114 Locate
trnW-CCA gene − 67315 67388 74 Locate
trnP-UGG gene − 67551 67624 74 Locate
psaJ gene + 68016 68150 135 Locate
rpl33 gene + 68630 68830 201 Locate
rps18 gene + 69001 69306 306 Locate
rpl20 gene − 69542 69928 387 Locate
rps12 gene − 70748 70861 114 Locate
clpP gene − 70994 72941 1948 Locate
psbB gene + 73403 74929 1527 Locate
psbT gene + 75122 75229 108 Locate
psbN gene − 75290 75421 132 Locate
psbH gene + 75527 75748 222 Locate
petB gene + 75873 77249 1377 Locate
petD gene + 77438 78654 1217 Locate
rpoA gene − 78831 79844 1014 Locate
rps11 gene − 79916 80332 417 Locate
rpl36 gene − 80434 80547 114 Locate
infA gene − 80643 80876 234 Locate
rps8 gene − 81001 81405 405 Locate
rpl14 gene − 81577 81945 369 Locate
rpl16 gene − 82072 83367 1296 Locate
rps3 gene − 83510 84172 663 Locate
rpl22 gene − 84182 84619 438 Locate
rps19 gene − 84679 84957 279 Locate
rpl2 gene − 85013 86504 1492 Locate
rpl23 gene − 86523 86804 282 Locate
trnM-CAU gene − 86970 87043 74 Locate
ycf2 gene + 87142 94002 6861 Locate
ycf15 gene + 94135 94332 198 Locate
trnL-CAA gene − 94593 94673 81 Locate
ndhB gene − 95221 97432 2212 Locate
rps7 gene − 97707 98174 468 Locate
rps12 gene − 98228 99021 794 Locate
trnV-GAC gene + 100628 100699 72 Locate
rrn16S gene + 100945 102435 1491 Locate
trnE-UUC gene + 102734 103754 1021 Locate
trnA-UGC gene + 103819 104704 886 Locate
rrn23S gene + 104873 107683 2811 Locate
rrn4.5S gene + 107781 107883 103 Locate
rrn5S gene + 108139 108259 121 Locate
trnR-ACG gene + 108503 108576 74 Locate
trnN-GUU gene − 109146 109217 72 Locate
ndhF gene − 110622 112865 2244 Locate
rpl32 gene + 113385 113561 177 Locate
trnL-UAG gene + 114345 114424 80 Locate
ccsA gene + 114509 115480 972 Locate
ndhD gene − 115747 117246 1500 Locate
psaC gene − 117370 117615 246 Locate
ndhE gene − 117866 118171 306 Locate
ndhG gene − 118385 118915 531 Locate
ndhI gene − 119264 119770 507 Locate
ndhA gene − 119846 122031 2186 Locate
ndhH gene − 122033 123214 1182 Locate
rps15 gene − 123311 123583 273 Locate
ycf1 gene − 123965 129529 5565 Locate
trnN-GUU gene + 129859 129930 72 Locate
trnR-ACG gene − 130500 130573 74 Locate
rrn5S gene − 130817 130937 121 Locate
rrn4.5S gene − 131193 131295 103 Locate
rrn23S gene − 131393 134203 2811 Locate
trnA-UGC gene − 134372 135257 886 Locate
trnE-UUC gene − 135322 136342 1021 Locate
rrn16S gene − 136641 138131 1491 Locate
trnV-GAC gene − 138377 138448 72 Locate
rps12 gene + 140055 140848 794 Locate
rps7 gene + 140902 141369 468 Locate
ndhB gene + 141644 143855 2212 Locate
trnL-CAA gene + 144403 144483 81 Locate
ycf15 gene − 144744 144941 198 Locate
ycf2 gene − 145074 151934 6861 Locate
trnM-CAU gene + 152033 152106 74 Locate
rpl23 gene + 152272 152553 282 Locate
rpl2 gene + 152572 154063 1492 Locate
Status Available
Accession NC_088747.1
Length 154,158 bp
GC content 38.1%
Annotated genes 131
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources