Callicarpa sp XL-2023a chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · OR263673.1 · 2–75 bp · −
psbA · OR263673.1 · 619–1,677 bp · −
trnK-UUU · OR263673.1 · 1,925–4,496 bp · −
matK · OR263673.1 · 2,231–3,754 bp · −
rps16 · OR263673.1 · 5,362–6,495 bp · −
trnQ-UUG · OR263673.1 · 7,620–7,691 bp · −
trnS-GCU · OR263673.1 · 8,829–8,916 bp · −
atpA · OR263673.1 · 10,726–12,249 bp · −
atpF · OR263673.1 · 12,318–13,564 bp · −
atpH · OR263673.1 · 13,931–14,176 bp · −
atpI · OR263673.1 · 15,208–15,951 bp · −
rps2 · OR263673.1 · 16,183–16,893 bp · −
rpoC2 · OR263673.1 · 17,110–21,291 bp · −
rpoC1 · OR263673.1 · 21,446–24,271 bp · −
rpoB · OR263673.1 · 24,298–27,510 bp · −
psbM · OR263673.1 · 30,588–30,692 bp · −
trnD-GUC · OR263673.1 · 31,230–31,303 bp · −
trnY-GUA · OR263673.1 · 31,412–31,495 bp · −
trnE-UUC · OR263673.1 · 31,555–31,627 bp · −
trnS-UGA · OR263673.1 · 36,313–36,405 bp · −
trnM-CAU · OR263673.1 · 37,421–37,494 bp · −
rps14 · OR263673.1 · 37,644–37,946 bp · −
psaB · OR263673.1 · 38,069–40,273 bp · −
psaA · OR263673.1 · 40,299–42,551 bp · −
pafI · OR263673.1 · 43,282–45,234 bp · −
rps4 · OR263673.1 · 46,447–47,052 bp · −
trnT-UGU · OR263673.1 · 47,424–47,496 bp · −
ndhJ · OR263673.1 · 49,834–50,310 bp · −
ndhK · OR263673.1 · 50,411–51,172 bp · −
ndhC · OR263673.1 · 51,142–51,504 bp · −
trnV-UAC · OR263673.1 · 52,714–53,366 bp · −
atpE · OR263673.1 · 53,828–54,229 bp · −
atpB · OR263673.1 · 54,226–55,722 bp · −
psbJ · OR263673.1 · 65,450–65,572 bp · −
psbL · OR263673.1 · 65,706–65,927 bp · −
psbF · OR263673.1 · 65,846–65,965 bp · −
psbE · OR263673.1 · 65,980–66,231 bp · −
trnW-CCA · OR263673.1 · 67,668–67,741 bp · −
trnP-UGG · OR263673.1 · 67,904–67,977 bp · −
rpl20 · OR263673.1 · 69,899–70,285 bp · −
rps12 · OR263673.1 · 71,104–71,217 bp · −
rps12 · OR263673.1 · 98,588–99,381 bp · −
clpP1 · OR263673.1 · 71,351–73,299 bp · −
pbf1 · OR263673.1 · 75,646–75,777 bp · −
rpoA · OR263673.1 · 79,190–80,203 bp · −
rps11 · OR263673.1 · 80,275–80,691 bp · −
rpl36 · OR263673.1 · 80,793–80,906 bp · −
infA · OR263673.1 · 81,002–81,235 bp · −
rps8 · OR263673.1 · 81,360–81,764 bp · −
rpl14 · OR263673.1 · 81,937–82,305 bp · −
rpl16 · OR263673.1 · 82,432–83,727 bp · −
rps3 · OR263673.1 · 83,870–84,532 bp · −
rpl22 · OR263673.1 · 84,542–84,979 bp · −
rpl2 · OR263673.1 · 85,373–86,864 bp · −
rpl23 · OR263673.1 · 86,883–87,164 bp · −
trnM-CAU · OR263673.1 · 87,330–87,403 bp · −
trnL-CAA · OR263673.1 · 94,953–95,033 bp · −
ndhB · OR263673.1 · 95,581–97,792 bp · −
rps7 · OR263673.1 · 98,067–98,534 bp · −
trnN-GUU · OR263673.1 · 109,529–109,600 bp · −
ndhF · OR263673.1 · 111,005–113,248 bp · −
ndhD · OR263673.1 · 116,169–117,671 bp · −
psaC · OR263673.1 · 117,791–118,036 bp · −
ndhE · OR263673.1 · 118,287–118,589 bp · −
ndhG · OR263673.1 · 118,806–119,336 bp · −
ndhI · OR263673.1 · 119,687–120,193 bp · −
ndhA · OR263673.1 · 120,269–122,470 bp · −
ndhH · OR263673.1 · 122,472–123,707 bp · −
rps15 · OR263673.1 · 123,750–124,085 bp · −
ycf1 · OR263673.1 · 124,404–130,070 bp · −
trnR-ACG · OR263673.1 · 130,930–131,003 bp · −
rrn5 · OR263673.1 · 131,247–131,367 bp · −
rrn4.5 · OR263673.1 · 131,623–131,725 bp · −
rrn23 · OR263673.1 · 131,825–134,633 bp · −
trnA-UGC · OR263673.1 · 134,802–135,688 bp · −
trnI-GAU · OR263673.1 · 135,753–136,773 bp · −
rrn16 · OR263673.1 · 137,072–138,562 bp · −
trnV-GAC · OR263673.1 · 138,808–138,879 bp · −
ycf2 · OR263673.1 · 145,527–152,387 bp · −
psbK · OR263673.1 · 8,025–8,210 bp · +
psbI · OR263673.1 · 8,600–8,710 bp · +
trnG-UCC · OR263673.1 · 9,622–10,372 bp · +
trnR-UCU · OR263673.1 · 10,550–10,621 bp · +
trnC-GCA · OR263673.1 · 28,686–28,756 bp · +
petN · OR263673.1 · 29,588–29,677 bp · +
trnT-GGU · OR263673.1 · 32,184–32,255 bp · +
psbD · OR263673.1 · 33,635–34,696 bp · +
psbC · OR263673.1 · 34,644–36,065 bp · +
psbZ · OR263673.1 · 36,735–36,923 bp · +
trnG-GCC · OR263673.1 · 37,199–37,269 bp · +
trnS-GGA · OR263673.1 · 46,080–46,166 bp · +
trnL-UAA · OR263673.1 · 48,198–48,770 bp · +
trnF-GAA · OR263673.1 · 49,112–49,184 bp · +
trnM-CAU · OR263673.1 · 53,548–53,620 bp · +
rbcL · OR263673.1 · 56,486–57,946 bp · +
accD · OR263673.1 · 58,581–60,125 bp · +
psaI · OR263673.1 · 60,835–60,945 bp · +
pafII · OR263673.1 · 61,384–61,938 bp · +
cemA · OR263673.1 · 62,586–63,275 bp · +
petA · OR263673.1 · 63,465–64,427 bp · +
petL · OR263673.1 · 67,161–67,256 bp · +
petG · OR263673.1 · 67,432–67,545 bp · +
psaJ · OR263673.1 · 68,369–68,503 bp · +
rpl33 · OR263673.1 · 68,986–69,186 bp · +
rps18 · OR263673.1 · 69,357–69,662 bp · +
rps12 · OR263673.1 · 140,508–141,301 bp · +
psbB · OR263673.1 · 73,761–75,287 bp · +
psbT · OR263673.1 · 75,478–75,585 bp · +
psbH · OR263673.1 · 75,883–76,104 bp · +
petB · OR263673.1 · 76,229–77,609 bp · +
petD · OR263673.1 · 77,798–79,013 bp · +
ycf2 · OR263673.1 · 87,502–94,362 bp · +
trnV-GAC · OR263673.1 · 101,010–101,081 bp · +
rrn16 · OR263673.1 · 101,327–102,817 bp · +
trnI-GAU · OR263673.1 · 103,116–104,136 bp · +
trnA-UGC · OR263673.1 · 104,201–105,087 bp · +
rrn23 · OR263673.1 · 105,256–108,064 bp · +
rrn4.5 · OR263673.1 · 108,164–108,266 bp · +
rrn5 · OR263673.1 · 108,522–108,642 bp · +
trnR-ACG · OR263673.1 · 108,886–108,959 bp · +
rpl32 · OR263673.1 · 113,773–113,949 bp · +
trnL-UAG · OR263673.1 · 114,767–114,846 bp · +
ccsA · OR263673.1 · 114,931–115,902 bp · +
trnN-GUU · OR263673.1 · 130,289–130,360 bp · +
rps7 · OR263673.1 · 141,355–141,822 bp · +
ndhB · OR263673.1 · 142,097–144,308 bp · +
trnL-CAA · OR263673.1 · 144,856–144,936 bp · +
trnM-CAU · OR263673.1 · 152,486–152,559 bp · +
rpl23 · OR263673.1 · 152,725–153,006 bp · +
rpl2 · OR263673.1 · 153,025–154,516 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Callicarpa sp XL-2023a
ANNOTATED PLASTOME
OR263673.1
154,613 bp · 129 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38653 77306 115960 154613 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
130 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 619 1677 1059 Locate
trnK-UUU gene − 1925 4496 2572 Locate
matK gene − 2231 3754 1524 Locate
rps16 gene − 5362 6495 1134 Locate
trnQ-UUG gene − 7620 7691 72 Locate
psbK gene + 8025 8210 186 Locate
psbI gene + 8600 8710 111 Locate
trnS-GCU gene − 8829 8916 88 Locate
trnG-UCC gene + 9622 10372 751 Locate
trnR-UCU gene + 10550 10621 72 Locate
atpA gene − 10726 12249 1524 Locate
atpF gene − 12318 13564 1247 Locate
atpH gene − 13931 14176 246 Locate
atpI gene − 15208 15951 744 Locate
rps2 gene − 16183 16893 711 Locate
rpoC2 gene − 17110 21291 4182 Locate
rpoC1 gene − 21446 24271 2826 Locate
rpoB gene − 24298 27510 3213 Locate
trnC-GCA gene + 28686 28756 71 Locate
petN gene + 29588 29677 90 Locate
psbM gene − 30588 30692 105 Locate
trnD-GUC gene − 31230 31303 74 Locate
trnY-GUA gene − 31412 31495 84 Locate
trnE-UUC gene − 31555 31627 73 Locate
trnT-GGU gene + 32184 32255 72 Locate
psbD gene + 33635 34696 1062 Locate
psbC gene + 34644 36065 1422 Locate
trnS-UGA gene − 36313 36405 93 Locate
psbZ gene + 36735 36923 189 Locate
trnG-GCC gene + 37199 37269 71 Locate
trnM-CAU gene − 37421 37494 74 Locate
rps14 gene − 37644 37946 303 Locate
psaB gene − 38069 40273 2205 Locate
psaA gene − 40299 42551 2253 Locate
pafI gene − 43282 45234 1953 Locate
trnS-GGA gene + 46080 46166 87 Locate
rps4 gene − 46447 47052 606 Locate
trnT-UGU gene − 47424 47496 73 Locate
trnL-UAA gene + 48198 48770 573 Locate
trnF-GAA gene + 49112 49184 73 Locate
ndhJ gene − 49834 50310 477 Locate
ndhK gene − 50411 51172 762 Locate
ndhC gene − 51142 51504 363 Locate
trnV-UAC gene − 52714 53366 653 Locate
trnM-CAU gene + 53548 53620 73 Locate
atpE gene − 53828 54229 402 Locate
atpB gene − 54226 55722 1497 Locate
rbcL gene + 56486 57946 1461 Locate
accD gene + 58581 60125 1545 Locate
psaI gene + 60835 60945 111 Locate
pafII gene + 61384 61938 555 Locate
cemA gene + 62586 63275 690 Locate
petA gene + 63465 64427 963 Locate
psbJ gene − 65450 65572 123 Locate
psbL gene − 65706 65927 222 Locate
psbF gene − 65846 65965 120 Locate
psbE gene − 65980 66231 252 Locate
petL gene + 67161 67256 96 Locate
petG gene + 67432 67545 114 Locate
trnW-CCA gene − 67668 67741 74 Locate
trnP-UGG gene − 67904 67977 74 Locate
psaJ gene + 68369 68503 135 Locate
rpl33 gene + 68986 69186 201 Locate
rps18 gene + 69357 69662 306 Locate
rpl20 gene − 69899 70285 387 Locate
rps12 gene − 71104 71217 114 Locate
clpP1 gene − 71351 73299 1949 Locate
psbB gene + 73761 75287 1527 Locate
psbT gene + 75478 75585 108 Locate
pbf1 gene − 75646 75777 132 Locate
psbH gene + 75883 76104 222 Locate
petB gene + 76229 77609 1381 Locate
petD gene + 77798 79013 1216 Locate
rpoA gene − 79190 80203 1014 Locate
rps11 gene − 80275 80691 417 Locate
rpl36 gene − 80793 80906 114 Locate
infA gene − 81002 81235 234 Locate
rps8 gene − 81360 81764 405 Locate
rpl14 gene − 81937 82305 369 Locate
rpl16 gene − 82432 83727 1296 Locate
rps3 gene − 83870 84532 663 Locate
rpl22 gene − 84542 84979 438 Locate
rpl2 gene − 85373 86864 1492 Locate
rpl23 gene − 86883 87164 282 Locate
trnM-CAU gene − 87330 87403 74 Locate
ycf2 gene + 87502 94362 6861 Locate
trnL-CAA gene − 94953 95033 81 Locate
ndhB gene − 95581 97792 2212 Locate
rps7 gene − 98067 98534 468 Locate
rps12 gene − 98588 99381 794 Locate
trnV-GAC gene + 101010 101081 72 Locate
rrn16 gene + 101327 102817 1491 Locate
trnI-GAU gene + 103116 104136 1021 Locate
trnA-UGC gene + 104201 105087 887 Locate
rrn23 gene + 105256 108064 2809 Locate
rrn4.5 gene + 108164 108266 103 Locate
rrn5 gene + 108522 108642 121 Locate
trnR-ACG gene + 108886 108959 74 Locate
trnN-GUU gene − 109529 109600 72 Locate
ndhF gene − 111005 113248 2244 Locate
rpl32 gene + 113773 113949 177 Locate
trnL-UAG gene + 114767 114846 80 Locate
ccsA gene + 114931 115902 972 Locate
ndhD gene − 116169 117671 1503 Locate
psaC gene − 117791 118036 246 Locate
ndhE gene − 118287 118589 303 Locate
ndhG gene − 118806 119336 531 Locate
ndhI gene − 119687 120193 507 Locate
ndhA gene − 120269 122470 2202 Locate
ndhH gene − 122472 123707 1236 Locate
rps15 gene − 123750 124085 336 Locate
ycf1 gene − 124404 130070 5667 Locate
trnN-GUU gene + 130289 130360 72 Locate
trnR-ACG gene − 130930 131003 74 Locate
rrn5 gene − 131247 131367 121 Locate
rrn4.5 gene − 131623 131725 103 Locate
rrn23 gene − 131825 134633 2809 Locate
trnA-UGC gene − 134802 135688 887 Locate
trnI-GAU gene − 135753 136773 1021 Locate
rrn16 gene − 137072 138562 1491 Locate
trnV-GAC gene − 138808 138879 72 Locate
rps12 gene + 140508 141301 794 Locate
rps7 gene + 141355 141822 468 Locate
ndhB gene + 142097 144308 2212 Locate
trnL-CAA gene + 144856 144936 81 Locate
ycf2 gene − 145527 152387 6861 Locate
trnM-CAU gene + 152486 152559 74 Locate
rpl23 gene + 152725 153006 282 Locate
rpl2 gene + 153025 154516 1492 Locate
Status Available
Accession OR263673.1
Length 154,613 bp
GC content 38.0%
Annotated genes 129
Gene sequence records 0
Translation Rna 37 Photosystem Ii 14 Other 13 Ribosomal Protein 25 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources