Caryopteris mongholica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_035729.1 · 22–95 bp · −
psbA · NC_035729.1 · 318–1,376 bp · −
trnK-UUU · NC_035729.1 · 1,609–4,185 bp · −
matK · NC_035729.1 · 1,910–3,445 bp · −
rps16 · NC_035729.1 · 5,051–6,241 bp · −
trnQ-UUG · NC_035729.1 · 7,453–7,524 bp · −
trnS-GCU · NC_035729.1 · 8,483–8,570 bp · −
atpA · NC_035729.1 · 10,298–11,821 bp · −
atpF · NC_035729.1 · 11,923–13,158 bp · −
atpH · NC_035729.1 · 13,534–13,779 bp · −
atpI · NC_035729.1 · 14,791–15,534 bp · −
rps2 · NC_035729.1 · 15,768–16,478 bp · −
rpoC2 · NC_035729.1 · 16,698–20,807 bp · −
rpoC1 · NC_035729.1 · 20,974–23,796 bp · −
rpoB · NC_035729.1 · 23,823–27,035 bp · −
psbM · NC_035729.1 · 29,725–29,829 bp · −
trnD-GUC · NC_035729.1 · 30,353–30,426 bp · −
trnY-GUA · NC_035729.1 · 30,534–30,617 bp · −
trnE-UUC · NC_035729.1 · 30,677–30,749 bp · −
trnS-UGA · NC_035729.1 · 35,371–35,463 bp · −
trnfM-CAU · NC_035729.1 · 36,483–36,556 bp · −
rps14 · NC_035729.1 · 36,701–37,003 bp · −
psaB · NC_035729.1 · 37,129–39,333 bp · −
psaA · NC_035729.1 · 39,359–41,611 bp · −
ycf3 · NC_035729.1 · 42,349–44,287 bp · −
rps4 · NC_035729.1 · 45,150–45,752 bp · −
trnT-UGU · NC_035729.1 · 46,114–46,186 bp · −
ndhJ · NC_035729.1 · 48,486–48,962 bp · −
ndhK · NC_035729.1 · 49,063–49,740 bp · −
ndhC · NC_035729.1 · 49,794–50,156 bp · −
trnV-UAC · NC_035729.1 · 51,019–51,683 bp · −
atpE · NC_035729.1 · 52,062–52,484 bp · −
atpB · NC_035729.1 · 52,481–53,977 bp · −
psbJ · NC_035729.1 · 63,585–63,707 bp · −
psbL · NC_035729.1 · 63,849–63,965 bp · −
psbF · NC_035729.1 · 63,989–64,108 bp · −
psbE · NC_035729.1 · 64,123–64,374 bp · −
trnW-CCA · NC_035729.1 · 65,785–65,858 bp · −
trnP-UGG · NC_035729.1 · 66,028–66,101 bp · −
rpl20 · NC_035729.1 · 67,896–68,282 bp · −
rps12 · NC_035729.1 · 69,098–69,211 bp · −
rps12 · NC_035729.1 · 96,499–97,295 bp · −
clpP · NC_035729.1 · 69,348–71,269 bp · −
psbN · NC_035729.1 · 73,604–73,735 bp · −
rpoA · NC_035729.1 · 77,123–78,142 bp · −
rps11 · NC_035729.1 · 78,214–78,630 bp · −
rpl36 · NC_035729.1 · 78,733–78,846 bp · −
infA · NC_035729.1 · 78,942–79,175 bp · −
rps8 · NC_035729.1 · 79,300–79,704 bp · −
rpl14 · NC_035729.1 · 79,880–80,248 bp · −
rpl16 · NC_035729.1 · 80,375–81,652 bp · −
rps3 · NC_035729.1 · 81,810–82,460 bp · −
rpl22 · NC_035729.1 · 82,445–82,912 bp · −
rps19 · NC_035729.1 · 82,968–83,246 bp · −
rpl2 · NC_035729.1 · 83,300–84,791 bp · −
rpl23 · NC_035729.1 · 84,810–85,091 bp · −
trnI-CAU · NC_035729.1 · 85,257–85,330 bp · −
trnL-CAA · NC_035729.1 · 92,865–92,945 bp · −
ndhB · NC_035729.1 · 93,492–95,703 bp · −
rps7 · NC_035729.1 · 95,978–96,445 bp · −
trnN-GUU · NC_035729.1 · 107,352–107,423 bp · −
ndhF · NC_035729.1 · 108,804–111,047 bp · −
psaC · NC_035729.1 · 115,190–115,435 bp · −
ndhE · NC_035729.1 · 115,686–115,991 bp · −
ndhG · NC_035729.1 · 116,193–116,723 bp · −
ndhI · NC_035729.1 · 117,050–117,556 bp · −
ndhA · NC_035729.1 · 117,632–119,639 bp · −
ndhH · NC_035729.1 · 119,641–120,822 bp · −
rps15 · NC_035729.1 · 120,919–121,191 bp · −
ycf1 · NC_035729.1 · 121,579–127,146 bp · −
trnR-ACG · NC_035729.1 · 128,114–128,187 bp · −
rrn5S · NC_035729.1 · 128,432–128,552 bp · −
rrn4.5S · NC_035729.1 · 128,782–128,884 bp · −
rrn23S · NC_035729.1 · 128,884–131,801 bp · −
trnA-UGC · NC_035729.1 · 131,963–132,843 bp · −
trnI-GAU · NC_035729.1 · 132,908–133,929 bp · −
rrn16 · NC_035729.1 · 134,229–135,718 bp · −
trnV-GAC · NC_035729.1 · 135,946–136,017 bp · −
ycf15 · NC_035729.1 · 142,314–142,562 bp · −
ycf2 · NC_035729.1 · 142,653–149,492 bp · −
psbK · NC_035729.1 · 7,854–8,039 bp · +
psbI · NC_035729.1 · 8,252–8,362 bp · +
trnG-UCC · NC_035729.1 · 9,221–9,980 bp · +
trnR-UCU · NC_035729.1 · 10,118–10,189 bp · +
trnC-GCA · NC_035729.1 · 28,188–28,258 bp · +
petN · NC_035729.1 · 28,992–29,081 bp · +
trnT-GGU · NC_035729.1 · 31,288–31,359 bp · +
psbD · NC_035729.1 · 32,687–33,748 bp · +
psbC · NC_035729.1 · 33,696–35,117 bp · +
psbZ · NC_035729.1 · 35,783–35,971 bp · +
trnG-GCC · NC_035729.1 · 36,242–36,312 bp · +
trnS-GGA · NC_035729.1 · 44,762–44,848 bp · +
trnL-UAA · NC_035729.1 · 46,888–47,459 bp · +
trnF-GAA · NC_035729.1 · 47,754–47,826 bp · +
trnM-CAU · NC_035729.1 · 51,864–51,936 bp · +
rbcL · NC_035729.1 · 54,738–56,186 bp · +
accD · NC_035729.1 · 56,792–58,330 bp · +
psaI · NC_035729.1 · 59,043–59,153 bp · +
ycf4 · NC_035729.1 · 59,563–60,117 bp · +
cemA · NC_035729.1 · 60,763–61,452 bp · +
petA · NC_035729.1 · 61,665–62,627 bp · +
petL · NC_035729.1 · 65,279–65,374 bp · +
petG · NC_035729.1 · 65,549–65,662 bp · +
psaJ · NC_035729.1 · 66,390–66,524 bp · +
rpl33 · NC_035729.1 · 66,988–67,188 bp · +
rps18 · NC_035729.1 · 67,354–67,659 bp · +
rps12 · NC_035729.1 · 137,616–138,412 bp · +
psbB · NC_035729.1 · 71,715–73,241 bp · +
psbT · NC_035729.1 · 73,436–73,543 bp · +
psbH · NC_035729.1 · 73,841–74,062 bp · +
petB · NC_035729.1 · 74,183–75,542 bp · +
petD · NC_035729.1 · 75,731–76,946 bp · +
ycf2 · NC_035729.1 · 85,419–92,258 bp · +
ycf15 · NC_035729.1 · 92,349–92,597 bp · +
trnV-GAC · NC_035729.1 · 98,894–98,965 bp · +
rrn16 · NC_035729.1 · 99,193–100,682 bp · +
trnI-GAU · NC_035729.1 · 100,982–102,003 bp · +
trnA-UGC · NC_035729.1 · 102,068–102,948 bp · +
rrn23S · NC_035729.1 · 103,110–105,925 bp · +
rrn4.5S · NC_035729.1 · 106,027–106,129 bp · +
rrn5S · NC_035729.1 · 106,359–106,479 bp · +
trnR-ACG · NC_035729.1 · 106,724–106,797 bp · +
ycf1 · NC_035729.1 · 107,765–108,844 bp · +
rpl32 · NC_035729.1 · 111,592–111,768 bp · +
trnL-UAG · NC_035729.1 · 112,181–112,260 bp · +
ccsA · NC_035729.1 · 112,349–113,320 bp · +
trnN-GUU · NC_035729.1 · 127,488–127,559 bp · +
rps7 · NC_035729.1 · 138,466–138,933 bp · +
ndhB · NC_035729.1 · 139,208–141,419 bp · +
trnL-CAA · NC_035729.1 · 141,966–142,046 bp · +
trnI-CAU · NC_035729.1 · 149,581–149,654 bp · +
rpl23 · NC_035729.1 · 149,820–150,101 bp · +
rpl2 · NC_035729.1 · 150,120–151,611 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Caryopteris mongholica
ANNOTATED PLASTOME
NC_035729.1
151,707 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37927 75854 113780 151707 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 22 95 74 Locate
psbA gene − 318 1376 1059 Locate
trnK-UUU gene − 1609 4185 2577 Locate
matK gene − 1910 3445 1536 Locate
rps16 gene − 5051 6241 1191 Locate
trnQ-UUG gene − 7453 7524 72 Locate
psbK gene + 7854 8039 186 Locate
psbI gene + 8252 8362 111 Locate
trnS-GCU gene − 8483 8570 88 Locate
trnG-UCC gene + 9221 9980 760 Locate
trnR-UCU gene + 10118 10189 72 Locate
atpA gene − 10298 11821 1524 Locate
atpF gene − 11923 13158 1236 Locate
atpH gene − 13534 13779 246 Locate
atpI gene − 14791 15534 744 Locate
rps2 gene − 15768 16478 711 Locate
rpoC2 gene − 16698 20807 4110 Locate
rpoC1 gene − 20974 23796 2823 Locate
rpoB gene − 23823 27035 3213 Locate
trnC-GCA gene + 28188 28258 71 Locate
petN gene + 28992 29081 90 Locate
psbM gene − 29725 29829 105 Locate
trnD-GUC gene − 30353 30426 74 Locate
trnY-GUA gene − 30534 30617 84 Locate
trnE-UUC gene − 30677 30749 73 Locate
trnT-GGU gene + 31288 31359 72 Locate
psbD gene + 32687 33748 1062 Locate
psbC gene + 33696 35117 1422 Locate
trnS-UGA gene − 35371 35463 93 Locate
psbZ gene + 35783 35971 189 Locate
trnG-GCC gene + 36242 36312 71 Locate
trnfM-CAU gene − 36483 36556 74 Locate
rps14 gene − 36701 37003 303 Locate
psaB gene − 37129 39333 2205 Locate
psaA gene − 39359 41611 2253 Locate
ycf3 gene − 42349 44287 1939 Locate
trnS-GGA gene + 44762 44848 87 Locate
rps4 gene − 45150 45752 603 Locate
trnT-UGU gene − 46114 46186 73 Locate
trnL-UAA gene + 46888 47459 572 Locate
trnF-GAA gene + 47754 47826 73 Locate
ndhJ gene − 48486 48962 477 Locate
ndhK gene − 49063 49740 678 Locate
ndhC gene − 49794 50156 363 Locate
trnV-UAC gene − 51019 51683 665 Locate
trnM-CAU gene + 51864 51936 73 Locate
atpE gene − 52062 52484 423 Locate
atpB gene − 52481 53977 1497 Locate
rbcL gene + 54738 56186 1449 Locate
accD gene + 56792 58330 1539 Locate
psaI gene + 59043 59153 111 Locate
ycf4 gene + 59563 60117 555 Locate
cemA gene + 60763 61452 690 Locate
petA gene + 61665 62627 963 Locate
psbJ gene − 63585 63707 123 Locate
psbL gene − 63849 63965 117 Locate
psbF gene − 63989 64108 120 Locate
psbE gene − 64123 64374 252 Locate
petL gene + 65279 65374 96 Locate
petG gene + 65549 65662 114 Locate
trnW-CCA gene − 65785 65858 74 Locate
trnP-UGG gene − 66028 66101 74 Locate
psaJ gene + 66390 66524 135 Locate
rpl33 gene + 66988 67188 201 Locate
rps18 gene + 67354 67659 306 Locate
rpl20 gene − 67896 68282 387 Locate
rps12 gene − 69098 69211 114 Locate
clpP gene − 69348 71269 1922 Locate
psbB gene + 71715 73241 1527 Locate
psbT gene + 73436 73543 108 Locate
psbN gene − 73604 73735 132 Locate
psbH gene + 73841 74062 222 Locate
petB gene + 74183 75542 1360 Locate
petD gene + 75731 76946 1216 Locate
rpoA gene − 77123 78142 1020 Locate
rps11 gene − 78214 78630 417 Locate
rpl36 gene − 78733 78846 114 Locate
infA gene − 78942 79175 234 Locate
rps8 gene − 79300 79704 405 Locate
rpl14 gene − 79880 80248 369 Locate
rpl16 gene − 80375 81652 1278 Locate
rps3 gene − 81810 82460 651 Locate
rpl22 gene − 82445 82912 468 Locate
rps19 gene − 82968 83246 279 Locate
rpl2 gene − 83300 84791 1492 Locate
rpl23 gene − 84810 85091 282 Locate
trnI-CAU gene − 85257 85330 74 Locate
ycf2 gene + 85419 92258 6840 Locate
ycf15 gene + 92349 92597 249 Locate
trnL-CAA gene − 92865 92945 81 Locate
ndhB gene − 93492 95703 2212 Locate
rps7 gene − 95978 96445 468 Locate
rps12 gene − 96499 97295 797 Locate
trnV-GAC gene + 98894 98965 72 Locate
rrn16 gene + 99193 100682 1490 Locate
trnI-GAU gene + 100982 102003 1022 Locate
trnA-UGC gene + 102068 102948 881 Locate
rrn23S gene + 103110 105925 2816 Locate
rrn4.5S gene + 106027 106129 103 Locate
rrn5S gene + 106359 106479 121 Locate
trnR-ACG gene + 106724 106797 74 Locate
trnN-GUU gene − 107352 107423 72 Locate
ycf1 gene + 107765 108844 1080 Locate
ndhF gene − 108804 111047 2244 Locate
rpl32 gene + 111592 111768 177 Locate
trnL-UAG gene + 112181 112260 80 Locate
ccsA gene + 112349 113320 972 Locate
psaC gene − 115190 115435 246 Locate
ndhE gene − 115686 115991 306 Locate
ndhG gene − 116193 116723 531 Locate
ndhI gene − 117050 117556 507 Locate
ndhA gene − 117632 119639 2008 Locate
ndhH gene − 119641 120822 1182 Locate
rps15 gene − 120919 121191 273 Locate
ycf1 gene − 121579 127146 5568 Locate
trnN-GUU gene + 127488 127559 72 Locate
trnR-ACG gene − 128114 128187 74 Locate
rrn5S gene − 128432 128552 121 Locate
rrn4.5S gene − 128782 128884 103 Locate
rrn23S gene − 128884 131801 2918 Locate
trnA-UGC gene − 131963 132843 881 Locate
trnI-GAU gene − 132908 133929 1022 Locate
rrn16 gene − 134229 135718 1490 Locate
trnV-GAC gene − 135946 136017 72 Locate
rps12 gene + 137616 138412 797 Locate
rps7 gene + 138466 138933 468 Locate
ndhB gene + 139208 141419 2212 Locate
trnL-CAA gene + 141966 142046 81 Locate
ycf15 gene − 142314 142562 249 Locate
ycf2 gene − 142653 149492 6840 Locate
trnI-CAU gene + 149581 149654 74 Locate
rpl23 gene + 149820 150101 282 Locate
rpl2 gene + 150120 151611 1492 Locate
Status Available
Accession NC_035729.1
Length 151,707 bp
GC content 38.2%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 11 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources