Caryopteris tangutica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_069833.1 · 1–75 bp · −
psbA · NC_069833.1 · 298–1,356 bp · −
trnK-UUU · NC_069833.1 · 1,589–4,172 bp · −
matK · NC_069833.1 · 1,897–3,432 bp · −
rps16 · NC_069833.1 · 5,037–6,225 bp · −
trnQ-UUG · NC_069833.1 · 7,377–7,448 bp · −
trnS-GCU · NC_069833.1 · 8,406–8,493 bp · −
atpA · NC_069833.1 · 10,221–11,744 bp · −
atpF · NC_069833.1 · 11,846–13,080 bp · −
atpH · NC_069833.1 · 13,456–13,701 bp · −
atpI · NC_069833.1 · 14,732–15,475 bp · −
rps2 · NC_069833.1 · 15,710–16,420 bp · −
rpoC2 · NC_069833.1 · 16,643–20,752 bp · −
rpoC1 · NC_069833.1 · 20,919–23,746 bp · −
rpoB · NC_069833.1 · 23,773–26,985 bp · −
psbM · NC_069833.1 · 29,675–29,779 bp · −
trnD-GUC · NC_069833.1 · 30,303–30,376 bp · −
trnY-GUA · NC_069833.1 · 30,484–30,567 bp · −
trnE-UUC · NC_069833.1 · 30,627–30,699 bp · −
trnS-UGA · NC_069833.1 · 35,321–35,413 bp · −
trnfM-CAU · NC_069833.1 · 36,431–36,504 bp · −
rps14 · NC_069833.1 · 36,649–36,951 bp · −
psaB · NC_069833.1 · 37,075–39,279 bp · −
psaA · NC_069833.1 · 39,305–41,557 bp · −
ycf3 · NC_069833.1 · 42,295–44,233 bp · −
rps4 · NC_069833.1 · 45,104–45,706 bp · −
trnT-UGU · NC_069833.1 · 46,068–46,140 bp · −
ndhJ · NC_069833.1 · 48,467–48,943 bp · −
ndhK · NC_069833.1 · 49,044–49,721 bp · −
ndhC · NC_069833.1 · 49,775–50,137 bp · −
trnV-UAC · NC_069833.1 · 51,000–51,664 bp · −
atpE · NC_069833.1 · 52,043–52,465 bp · −
atpB · NC_069833.1 · 52,462–53,958 bp · −
psbJ · NC_069833.1 · 63,601–63,723 bp · −
psbL · NC_069833.1 · 63,865–63,981 bp · −
psbF · NC_069833.1 · 64,005–64,124 bp · −
psbE · NC_069833.1 · 64,139–64,390 bp · −
trnW-CCA · NC_069833.1 · 65,801–65,874 bp · −
trnP-UGG · NC_069833.1 · 66,044–66,117 bp · −
rpl20 · NC_069833.1 · 67,912–68,298 bp · −
rps12 · NC_069833.1 · 69,105–69,227 bp · −
rps12 · NC_069833.1 · 96,517–97,313 bp · −
clpP · NC_069833.1 · 69,366–71,286 bp · −
psbN · NC_069833.1 · 73,621–73,752 bp · −
rpoA · NC_069833.1 · 77,141–78,160 bp · −
rps11 · NC_069833.1 · 78,232–78,648 bp · −
rpl36 · NC_069833.1 · 78,751–78,864 bp · −
infA · NC_069833.1 · 78,960–79,193 bp · −
rps8 · NC_069833.1 · 79,318–79,722 bp · −
rpl14 · NC_069833.1 · 79,898–80,266 bp · −
rpl16 · NC_069833.1 · 80,393–81,670 bp · −
rps3 · NC_069833.1 · 81,828–82,478 bp · −
rpl22 · NC_069833.1 · 82,463–82,930 bp · −
rps19 · NC_069833.1 · 82,986–83,264 bp · −
rpl2 · NC_069833.1 · 83,318–84,809 bp · −
rpl23 · NC_069833.1 · 84,828–85,109 bp · −
trnI-CAU · NC_069833.1 · 85,275–85,348 bp · −
trnL-CAA · NC_069833.1 · 92,883–92,963 bp · −
ndhB · NC_069833.1 · 93,510–95,721 bp · −
rps7 · NC_069833.1 · 95,996–96,463 bp · −
trnN-GUU · NC_069833.1 · 107,369–107,440 bp · −
ndhF · NC_069833.1 · 108,780–111,065 bp · −
ndhD · NC_069833.1 · 113,575–115,104 bp · −
psaC · NC_069833.1 · 115,196–115,441 bp · −
ndhE · NC_069833.1 · 115,710–116,015 bp · −
ndhG · NC_069833.1 · 116,217–116,747 bp · −
ndhI · NC_069833.1 · 117,074–117,580 bp · −
ndhA · NC_069833.1 · 117,656–119,662 bp · −
ndhH · NC_069833.1 · 119,664–120,845 bp · −
rps15 · NC_069833.1 · 120,942–121,214 bp · −
ycf1 · NC_069833.1 · 121,602–127,169 bp · −
trnR-ACG · NC_069833.1 · 128,137–128,210 bp · −
rrn5S · NC_069833.1 · 128,455–128,575 bp · −
rrn4.5S · NC_069833.1 · 128,805–128,907 bp · −
rrn23S · NC_069833.1 · 128,907–131,824 bp · −
trnA-UGC · NC_069833.1 · 131,986–132,866 bp · −
trnI-GAU · NC_069833.1 · 132,931–133,951 bp · −
rrn16 · NC_069833.1 · 134,251–135,740 bp · −
trnV-GAC · NC_069833.1 · 135,968–136,039 bp · −
ycf15 · NC_069833.1 · 142,336–142,584 bp · −
ycf2 · NC_069833.1 · 142,675–149,514 bp · −
psbK · NC_069833.1 · 7,778–7,963 bp · +
psbI · NC_069833.1 · 8,175–8,285 bp · +
trnG-UCC · NC_069833.1 · 9,144–9,903 bp · +
trnR-UCU · NC_069833.1 · 10,041–10,112 bp · +
trnC-GCA · NC_069833.1 · 28,138–28,208 bp · +
petN · NC_069833.1 · 28,942–29,031 bp · +
trnT-GGU · NC_069833.1 · 31,238–31,309 bp · +
psbD · NC_069833.1 · 32,637–33,698 bp · +
psbC · NC_069833.1 · 33,646–35,067 bp · +
psbZ · NC_069833.1 · 35,733–35,921 bp · +
trnG-GCC · NC_069833.1 · 36,190–36,260 bp · +
trnS-GGA · NC_069833.1 · 44,716–44,802 bp · +
trnL-UAA · NC_069833.1 · 46,842–47,413 bp · +
trnF-GAA · NC_069833.1 · 47,708–47,780 bp · +
trnM-CAU · NC_069833.1 · 51,845–51,917 bp · +
rbcL · NC_069833.1 · 54,754–56,202 bp · +
accD · NC_069833.1 · 56,808–58,346 bp · +
psaI · NC_069833.1 · 59,059–59,169 bp · +
ycf4 · NC_069833.1 · 59,580–60,134 bp · +
cemA · NC_069833.1 · 60,780–61,469 bp · +
petA · NC_069833.1 · 61,682–62,644 bp · +
petL · NC_069833.1 · 65,295–65,390 bp · +
petG · NC_069833.1 · 65,565–65,678 bp · +
psaJ · NC_069833.1 · 66,406–66,540 bp · +
rpl33 · NC_069833.1 · 67,004–67,204 bp · +
rps18 · NC_069833.1 · 67,370–67,675 bp · +
rps12 · NC_069833.1 · 137,638–138,434 bp · +
psbB · NC_069833.1 · 71,732–73,258 bp · +
psbT · NC_069833.1 · 73,453–73,560 bp · +
psbH · NC_069833.1 · 73,858–74,079 bp · +
petB · NC_069833.1 · 74,200–75,560 bp · +
petD · NC_069833.1 · 75,749–76,964 bp · +
ycf2 · NC_069833.1 · 85,437–92,276 bp · +
ycf15 · NC_069833.1 · 92,367–92,615 bp · +
trnV-GAC · NC_069833.1 · 98,912–98,983 bp · +
rrn16 · NC_069833.1 · 99,211–100,700 bp · +
trnI-GAU · NC_069833.1 · 101,000–102,020 bp · +
trnA-UGC · NC_069833.1 · 102,085–102,965 bp · +
rrn23S · NC_069833.1 · 103,127–105,942 bp · +
rrn4.5S · NC_069833.1 · 106,044–106,146 bp · +
rrn5S · NC_069833.1 · 106,376–106,496 bp · +
trnR-ACG · NC_069833.1 · 106,741–106,814 bp · +
ycf1 · NC_069833.1 · 107,782–108,862 bp · +
rpl32 · NC_069833.1 · 111,600–111,776 bp · +
trnL-UAG · NC_069833.1 · 112,188–112,267 bp · +
ccsA · NC_069833.1 · 112,356–113,327 bp · +
trnN-GUU · NC_069833.1 · 127,511–127,582 bp · +
rps7 · NC_069833.1 · 138,488–138,955 bp · +
ndhB · NC_069833.1 · 139,230–141,441 bp · +
trnL-CAA · NC_069833.1 · 141,988–142,068 bp · +
trnI-CAU · NC_069833.1 · 149,603–149,676 bp · +
rpl23 · NC_069833.1 · 149,842–150,123 bp · +
rpl2 · NC_069833.1 · 150,142–151,633 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Caryopteris tangutica
ANNOTATED PLASTOME
NC_069833.1
151,728 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37932 75864 113796 151728 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 75 75 Locate
psbA gene − 298 1356 1059 Locate
trnK-UUU gene − 1589 4172 2584 Locate
matK gene − 1897 3432 1536 Locate
rps16 gene − 5037 6225 1189 Locate
trnQ-UUG gene − 7377 7448 72 Locate
psbK gene + 7778 7963 186 Locate
psbI gene + 8175 8285 111 Locate
trnS-GCU gene − 8406 8493 88 Locate
trnG-UCC gene + 9144 9903 760 Locate
trnR-UCU gene + 10041 10112 72 Locate
atpA gene − 10221 11744 1524 Locate
atpF gene − 11846 13080 1235 Locate
atpH gene − 13456 13701 246 Locate
atpI gene − 14732 15475 744 Locate
rps2 gene − 15710 16420 711 Locate
rpoC2 gene − 16643 20752 4110 Locate
rpoC1 gene − 20919 23746 2828 Locate
rpoB gene − 23773 26985 3213 Locate
trnC-GCA gene + 28138 28208 71 Locate
petN gene + 28942 29031 90 Locate
psbM gene − 29675 29779 105 Locate
trnD-GUC gene − 30303 30376 74 Locate
trnY-GUA gene − 30484 30567 84 Locate
trnE-UUC gene − 30627 30699 73 Locate
trnT-GGU gene + 31238 31309 72 Locate
psbD gene + 32637 33698 1062 Locate
psbC gene + 33646 35067 1422 Locate
trnS-UGA gene − 35321 35413 93 Locate
psbZ gene + 35733 35921 189 Locate
trnG-GCC gene + 36190 36260 71 Locate
trnfM-CAU gene − 36431 36504 74 Locate
rps14 gene − 36649 36951 303 Locate
psaB gene − 37075 39279 2205 Locate
psaA gene − 39305 41557 2253 Locate
ycf3 gene − 42295 44233 1939 Locate
trnS-GGA gene + 44716 44802 87 Locate
rps4 gene − 45104 45706 603 Locate
trnT-UGU gene − 46068 46140 73 Locate
trnL-UAA gene + 46842 47413 572 Locate
trnF-GAA gene + 47708 47780 73 Locate
ndhJ gene − 48467 48943 477 Locate
ndhK gene − 49044 49721 678 Locate
ndhC gene − 49775 50137 363 Locate
trnV-UAC gene − 51000 51664 665 Locate
trnM-CAU gene + 51845 51917 73 Locate
atpE gene − 52043 52465 423 Locate
atpB gene − 52462 53958 1497 Locate
rbcL gene + 54754 56202 1449 Locate
accD gene + 56808 58346 1539 Locate
psaI gene + 59059 59169 111 Locate
ycf4 gene + 59580 60134 555 Locate
cemA gene + 60780 61469 690 Locate
petA gene + 61682 62644 963 Locate
psbJ gene − 63601 63723 123 Locate
psbL gene − 63865 63981 117 Locate
psbF gene − 64005 64124 120 Locate
psbE gene − 64139 64390 252 Locate
petL gene + 65295 65390 96 Locate
petG gene + 65565 65678 114 Locate
trnW-CCA gene − 65801 65874 74 Locate
trnP-UGG gene − 66044 66117 74 Locate
psaJ gene + 66406 66540 135 Locate
rpl33 gene + 67004 67204 201 Locate
rps18 gene + 67370 67675 306 Locate
rpl20 gene − 67912 68298 387 Locate
rps12 gene − 69105 69227 123 Locate
clpP gene − 69366 71286 1921 Locate
psbB gene + 71732 73258 1527 Locate
psbT gene + 73453 73560 108 Locate
psbN gene − 73621 73752 132 Locate
psbH gene + 73858 74079 222 Locate
petB gene + 74200 75560 1361 Locate
petD gene + 75749 76964 1216 Locate
rpoA gene − 77141 78160 1020 Locate
rps11 gene − 78232 78648 417 Locate
rpl36 gene − 78751 78864 114 Locate
infA gene − 78960 79193 234 Locate
rps8 gene − 79318 79722 405 Locate
rpl14 gene − 79898 80266 369 Locate
rpl16 gene − 80393 81670 1278 Locate
rps3 gene − 81828 82478 651 Locate
rpl22 gene − 82463 82930 468 Locate
rps19 gene − 82986 83264 279 Locate
rpl2 gene − 83318 84809 1492 Locate
rpl23 gene − 84828 85109 282 Locate
trnI-CAU gene − 85275 85348 74 Locate
ycf2 gene + 85437 92276 6840 Locate
ycf15 gene + 92367 92615 249 Locate
trnL-CAA gene − 92883 92963 81 Locate
ndhB gene − 93510 95721 2212 Locate
rps7 gene − 95996 96463 468 Locate
rps12 gene − 96517 97313 797 Locate
trnV-GAC gene + 98912 98983 72 Locate
rrn16 gene + 99211 100700 1490 Locate
trnI-GAU gene + 101000 102020 1021 Locate
trnA-UGC gene + 102085 102965 881 Locate
rrn23S gene + 103127 105942 2816 Locate
rrn4.5S gene + 106044 106146 103 Locate
rrn5S gene + 106376 106496 121 Locate
trnR-ACG gene + 106741 106814 74 Locate
trnN-GUU gene − 107369 107440 72 Locate
ycf1 gene + 107782 108862 1081 Locate
ndhF gene − 108780 111065 2286 Locate
rpl32 gene + 111600 111776 177 Locate
trnL-UAG gene + 112188 112267 80 Locate
ccsA gene + 112356 113327 972 Locate
ndhD gene − 113575 115104 1530 Locate
psaC gene − 115196 115441 246 Locate
ndhE gene − 115710 116015 306 Locate
ndhG gene − 116217 116747 531 Locate
ndhI gene − 117074 117580 507 Locate
ndhA gene − 117656 119662 2007 Locate
ndhH gene − 119664 120845 1182 Locate
rps15 gene − 120942 121214 273 Locate
ycf1 gene − 121602 127169 5568 Locate
trnN-GUU gene + 127511 127582 72 Locate
trnR-ACG gene − 128137 128210 74 Locate
rrn5S gene − 128455 128575 121 Locate
rrn4.5S gene − 128805 128907 103 Locate
rrn23S gene − 128907 131824 2918 Locate
trnA-UGC gene − 131986 132866 881 Locate
trnI-GAU gene − 132931 133951 1021 Locate
rrn16 gene − 134251 135740 1490 Locate
trnV-GAC gene − 135968 136039 72 Locate
rps12 gene + 137638 138434 797 Locate
rps7 gene + 138488 138955 468 Locate
ndhB gene + 139230 141441 2212 Locate
trnL-CAA gene + 141988 142068 81 Locate
ycf15 gene − 142336 142584 249 Locate
ycf2 gene − 142675 149514 6840 Locate
trnI-CAU gene + 149603 149676 74 Locate
rpl23 gene + 149842 150123 282 Locate
rpl2 gene + 150142 151633 1492 Locate
Status Available
Accession NC_069833.1
Length 151,728 bp
GC content 38.2%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources