Clerodendrum chinense chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_068774.1 · 13–87 bp · −
psbA · NC_068774.1 · 397–1,455 bp · −
trnK-UUU · NC_068774.1 · 1,671–4,256 bp · −
matK · NC_068774.1 · 1,979–3,514 bp · −
rps16 · NC_068774.1 · 4,904–6,061 bp · −
trnQ-UUG · NC_068774.1 · 7,294–7,365 bp · −
trnS-GCU · NC_068774.1 · 8,533–8,620 bp · −
atpA · NC_068774.1 · 10,413–11,936 bp · −
atpF · NC_068774.1 · 12,031–13,259 bp · −
rpoC2 · NC_068774.1 · 13,721–17,719 bp · −
rpoC1 · NC_068774.1 · 17,874–20,688 bp · −
rpoB · NC_068774.1 · 20,715–23,927 bp · −
psbM · NC_068774.1 · 26,647–26,751 bp · −
trnD-GUC · NC_068774.1 · 27,275–27,348 bp · −
trnY-GUA · NC_068774.1 · 27,488–27,571 bp · −
trnE-UUC · NC_068774.1 · 27,638–27,710 bp · −
trnT-GGU · NC_068774.1 · 28,258–28,329 bp · −
trnS-UGA · NC_068774.1 · 32,182–32,274 bp · −
trnM-CAU · NC_068774.1 · 33,256–33,329 bp · −
rps14 · NC_068774.1 · 33,474–33,776 bp · −
psaB · NC_068774.1 · 33,894–36,098 bp · −
psaA · NC_068774.1 · 36,124–38,376 bp · −
ycf3 · NC_068774.1 · 39,098–41,038 bp · −
rps4 · NC_068774.1 · 42,111–42,716 bp · −
trnT-UGU · NC_068774.1 · 43,096–43,168 bp · −
ndhJ · NC_068774.1 · 45,433–45,909 bp · −
ndhK · NC_068774.1 · 46,010–46,687 bp · −
ndhC · NC_068774.1 · 46,742–47,104 bp · −
trnV-UAC · NC_068774.1 · 47,963–48,625 bp · −
atpE · NC_068774.1 · 49,095–49,496 bp · −
atpB · NC_068774.1 · 49,493–50,989 bp · −
psbJ · NC_068774.1 · 60,485–60,607 bp · −
psbL · NC_068774.1 · 60,741–60,857 bp · −
psbF · NC_068774.1 · 60,881–61,000 bp · −
psbE · NC_068774.1 · 61,015–61,266 bp · −
trnW-CCA · NC_068774.1 · 62,704–62,777 bp · −
trnP-UGG · NC_068774.1 · 62,945–63,018 bp · −
rpl20 · NC_068774.1 · 64,801–65,187 bp · −
rps12 · NC_068774.1 · 66,011–66,124 bp · −
rps12 · NC_068774.1 · 93,469–94,265 bp · −
clpP · NC_068774.1 · 66,252–68,213 bp · −
psbN · NC_068774.1 · 70,506–70,637 bp · −
rpoA · NC_068774.1 · 74,080–75,093 bp · −
rps11 · NC_068774.1 · 75,171–75,587 bp · −
rpl36 · NC_068774.1 · 75,689–75,802 bp · −
infA · NC_068774.1 · 75,898–76,131 bp · −
rps8 · NC_068774.1 · 76,257–76,661 bp · −
rpl14 · NC_068774.1 · 76,822–77,190 bp · −
rpl16 · NC_068774.1 · 77,307–78,572 bp · −
rps3 · NC_068774.1 · 78,745–79,401 bp · −
rpl22 · NC_068774.1 · 79,386–79,853 bp · −
rps19 · NC_068774.1 · 79,909–80,187 bp · −
rpl2 · NC_068774.1 · 80,241–81,740 bp · −
rpl23 · NC_068774.1 · 81,759–82,040 bp · −
ndhB · NC_068774.1 · 90,462–92,673 bp · −
rps7 · NC_068774.1 · 92,948–93,415 bp · −
trnN-GUU · NC_068774.1 · 104,332–104,403 bp · −
ndhF · NC_068774.1 · 105,830–108,061 bp · −
ndhD · NC_068774.1 · 110,675–112,204 bp · −
psaC · NC_068774.1 · 112,304–112,549 bp · −
ndhE · NC_068774.1 · 112,800–113,105 bp · −
ndhG · NC_068774.1 · 113,323–113,853 bp · −
ndhI · NC_068774.1 · 114,212–114,718 bp · −
ndhA · NC_068774.1 · 114,794–116,800 bp · −
ndhH · NC_068774.1 · 116,802–117,983 bp · −
rps15 · NC_068774.1 · 118,080–118,352 bp · −
ycf1 · NC_068774.1 · 118,730–124,306 bp · −
trnR-ACG · NC_068774.1 · 125,284–125,356 bp · −
rrn5S · NC_068774.1 · 125,598–125,718 bp · −
rrn4.5S · NC_068774.1 · 125,979–126,081 bp · −
rrn23S · NC_068774.1 · 126,180–128,989 bp · −
trnA-UGC · NC_068774.1 · 129,151–130,030 bp · −
trnI-GAU · NC_068774.1 · 130,095–131,115 bp · −
rrn16S · NC_068774.1 · 131,413–132,903 bp · −
trnV-GAC · NC_068774.1 · 133,131–133,202 bp · −
trnL-CAA · NC_068774.1 · 139,139–139,219 bp · −
ycf15 · NC_068774.1 · 139,487–139,690 bp · −
ycf2 · NC_068774.1 · 139,832–146,683 bp · −
psbK · NC_068774.1 · 7,729–7,914 bp · +
psbI · NC_068774.1 · 8,311–8,421 bp · +
trnG-UCC · NC_068774.1 · 9,271–10,035 bp · +
trnR-UCU · NC_068774.1 · 10,224–10,298 bp · +
trnC-GCA · NC_068774.1 · 25,125–25,195 bp · +
petN · NC_068774.1 · 25,775–25,864 bp · +
psbD · NC_068774.1 · 29,489–30,550 bp · +
psbC · NC_068774.1 · 30,498–31,919 bp · +
psbZ · NC_068774.1 · 32,600–32,788 bp · +
trnG-GCC · NC_068774.1 · 33,005–33,075 bp · +
trnS-GGA · NC_068774.1 · 41,712–41,798 bp · +
trnL-UAA · NC_068774.1 · 43,865–44,433 bp · +
trnF-GAA · NC_068774.1 · 44,733–44,805 bp · +
trnM-CAU · NC_068774.1 · 48,806–48,878 bp · +
rbcL · NC_068774.1 · 51,782–53,221 bp · +
accD · NC_068774.1 · 53,925–55,406 bp · +
psaI · NC_068774.1 · 56,007–56,117 bp · +
ycf4 · NC_068774.1 · 56,539–57,093 bp · +
cemA · NC_068774.1 · 57,750–58,439 bp · +
petA · NC_068774.1 · 58,639–59,601 bp · +
petL · NC_068774.1 · 62,184–62,279 bp · +
petG · NC_068774.1 · 62,468–62,581 bp · +
psaJ · NC_068774.1 · 63,290–63,424 bp · +
rpl33 · NC_068774.1 · 63,894–64,094 bp · +
rps18 · NC_068774.1 · 64,261–64,566 bp · +
rps12 · NC_068774.1 · 134,786–135,582 bp · +
psbB · NC_068774.1 · 68,635–70,161 bp · +
psbT · NC_068774.1 · 70,338–70,445 bp · +
psbH · NC_068774.1 · 70,725–70,964 bp · +
petB · NC_068774.1 · 71,086–72,458 bp · +
petD · NC_068774.1 · 72,647–73,882 bp · +
ycf2 · NC_068774.1 · 82,368–89,219 bp · +
ycf15 · NC_068774.1 · 89,361–89,564 bp · +
trnL-CAA · NC_068774.1 · 89,832–89,912 bp · +
trnV-GAC · NC_068774.1 · 95,849–95,920 bp · +
rrn16S · NC_068774.1 · 96,148–97,638 bp · +
trnI-GAU · NC_068774.1 · 97,936–98,956 bp · +
trnA-UGC · NC_068774.1 · 99,021–99,900 bp · +
rrn23S · NC_068774.1 · 100,062–102,871 bp · +
rrn4.5S · NC_068774.1 · 102,970–103,072 bp · +
rrn5S · NC_068774.1 · 103,333–103,453 bp · +
trnR-ACG · NC_068774.1 · 103,695–103,767 bp · +
ycf1 · NC_068774.1 · 104,745–105,833 bp · +
rpl32 · NC_068774.1 · 108,635–108,811 bp · +
trnL-UAG · NC_068774.1 · 109,273–109,352 bp · +
ccsA · NC_068774.1 · 109,465–110,418 bp · +
trnN-GUU · NC_068774.1 · 124,648–124,719 bp · +
rps7 · NC_068774.1 · 135,636–136,103 bp · +
ndhB · NC_068774.1 · 136,378–138,589 bp · +
rpl23 · NC_068774.1 · 147,011–147,292 bp · +
rpl2 · NC_068774.1 · 147,311–148,810 bp · +
0 kb
12 kb
24 kb
36 kb
48 kb
60 kb
72 kb
84 kb
96 kb
108 kb
120 kb
132 kb
144 kb
Clerodendrum chinense
ANNOTATED PLASTOME
NC_068774.1
148,888 bp · 128 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37222 74444 111666 148888 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnL-CAA trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnT-GGU trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC trnL-CAA ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
129 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 13 87 75 Locate
psbA gene − 397 1455 1059 Locate
trnK-UUU gene − 1671 4256 2586 Locate
matK gene − 1979 3514 1536 Locate
rps16 gene − 4904 6061 1158 Locate
trnQ-UUG gene − 7294 7365 72 Locate
psbK gene + 7729 7914 186 Locate
psbI gene + 8311 8421 111 Locate
trnS-GCU gene − 8533 8620 88 Locate
trnG-UCC gene + 9271 10035 765 Locate
trnR-UCU gene + 10224 10298 75 Locate
atpA gene − 10413 11936 1524 Locate
atpF gene − 12031 13259 1229 Locate
rpoC2 gene − 13721 17719 3999 Locate
rpoC1 gene − 17874 20688 2815 Locate
rpoB gene − 20715 23927 3213 Locate
trnC-GCA gene + 25125 25195 71 Locate
petN gene + 25775 25864 90 Locate
psbM gene − 26647 26751 105 Locate
trnD-GUC gene − 27275 27348 74 Locate
trnY-GUA gene − 27488 27571 84 Locate
trnE-UUC gene − 27638 27710 73 Locate
trnT-GGU gene − 28258 28329 72 Locate
psbD gene + 29489 30550 1062 Locate
psbC gene + 30498 31919 1422 Locate
trnS-UGA gene − 32182 32274 93 Locate
psbZ gene + 32600 32788 189 Locate
trnG-GCC gene + 33005 33075 71 Locate
trnM-CAU gene − 33256 33329 74 Locate
rps14 gene − 33474 33776 303 Locate
psaB gene − 33894 36098 2205 Locate
psaA gene − 36124 38376 2253 Locate
ycf3 gene − 39098 41038 1941 Locate
trnS-GGA gene + 41712 41798 87 Locate
rps4 gene − 42111 42716 606 Locate
trnT-UGU gene − 43096 43168 73 Locate
trnL-UAA gene + 43865 44433 569 Locate
trnF-GAA gene + 44733 44805 73 Locate
ndhJ gene − 45433 45909 477 Locate
ndhK gene − 46010 46687 678 Locate
ndhC gene − 46742 47104 363 Locate
trnV-UAC gene − 47963 48625 663 Locate
trnM-CAU gene + 48806 48878 73 Locate
atpE gene − 49095 49496 402 Locate
atpB gene − 49493 50989 1497 Locate
rbcL gene + 51782 53221 1440 Locate
accD gene + 53925 55406 1482 Locate
psaI gene + 56007 56117 111 Locate
ycf4 gene + 56539 57093 555 Locate
cemA gene + 57750 58439 690 Locate
petA gene + 58639 59601 963 Locate
psbJ gene − 60485 60607 123 Locate
psbL gene − 60741 60857 117 Locate
psbF gene − 60881 61000 120 Locate
psbE gene − 61015 61266 252 Locate
petL gene + 62184 62279 96 Locate
petG gene + 62468 62581 114 Locate
trnW-CCA gene − 62704 62777 74 Locate
trnP-UGG gene − 62945 63018 74 Locate
psaJ gene + 63290 63424 135 Locate
rpl33 gene + 63894 64094 201 Locate
rps18 gene + 64261 64566 306 Locate
rpl20 gene − 64801 65187 387 Locate
rps12 gene − 66011 66124 114 Locate
clpP gene − 66252 68213 1962 Locate
psbB gene + 68635 70161 1527 Locate
psbT gene + 70338 70445 108 Locate
psbN gene − 70506 70637 132 Locate
psbH gene + 70725 70964 240 Locate
petB gene + 71086 72458 1373 Locate
petD gene + 72647 73882 1236 Locate
rpoA gene − 74080 75093 1014 Locate
rps11 gene − 75171 75587 417 Locate
rpl36 gene − 75689 75802 114 Locate
infA gene − 75898 76131 234 Locate
rps8 gene − 76257 76661 405 Locate
rpl14 gene − 76822 77190 369 Locate
rpl16 gene − 77307 78572 1266 Locate
rps3 gene − 78745 79401 657 Locate
rpl22 gene − 79386 79853 468 Locate
rps19 gene − 79909 80187 279 Locate
rpl2 gene − 80241 81740 1500 Locate
rpl23 gene − 81759 82040 282 Locate
ycf2 gene + 82368 89219 6852 Locate
ycf15 gene + 89361 89564 204 Locate
trnL-CAA gene + 89832 89912 81 Locate
ndhB gene − 90462 92673 2212 Locate
rps7 gene − 92948 93415 468 Locate
rps12 gene − 93469 94265 797 Locate
trnV-GAC gene + 95849 95920 72 Locate
rrn16S gene + 96148 97638 1491 Locate
trnI-GAU gene + 97936 98956 1021 Locate
trnA-UGC gene + 99021 99900 880 Locate
rrn23S gene + 100062 102871 2810 Locate
rrn4.5S gene + 102970 103072 103 Locate
rrn5S gene + 103333 103453 121 Locate
trnR-ACG gene + 103695 103767 73 Locate
trnN-GUU gene − 104332 104403 72 Locate
ycf1 gene + 104745 105833 1089 Locate
ndhF gene − 105830 108061 2232 Locate
rpl32 gene + 108635 108811 177 Locate
trnL-UAG gene + 109273 109352 80 Locate
ccsA gene + 109465 110418 954 Locate
ndhD gene − 110675 112204 1530 Locate
psaC gene − 112304 112549 246 Locate
ndhE gene − 112800 113105 306 Locate
ndhG gene − 113323 113853 531 Locate
ndhI gene − 114212 114718 507 Locate
ndhA gene − 114794 116800 2007 Locate
ndhH gene − 116802 117983 1182 Locate
rps15 gene − 118080 118352 273 Locate
ycf1 gene − 118730 124306 5577 Locate
trnN-GUU gene + 124648 124719 72 Locate
trnR-ACG gene − 125284 125356 73 Locate
rrn5S gene − 125598 125718 121 Locate
rrn4.5S gene − 125979 126081 103 Locate
rrn23S gene − 126180 128989 2810 Locate
trnA-UGC gene − 129151 130030 880 Locate
trnI-GAU gene − 130095 131115 1021 Locate
rrn16S gene − 131413 132903 1491 Locate
trnV-GAC gene − 133131 133202 72 Locate
rps12 gene + 134786 135582 797 Locate
rps7 gene + 135636 136103 468 Locate
ndhB gene + 136378 138589 2212 Locate
trnL-CAA gene − 139139 139219 81 Locate
ycf15 gene − 139487 139690 204 Locate
ycf2 gene − 139832 146683 6852 Locate
rpl23 gene + 147011 147292 282 Locate
rpl2 gene + 147311 148810 1500 Locate
Status Available
Accession NC_068774.1
Length 148,888 bp
GC content 38.2%
Annotated genes 128
Gene sequence records 8
Translation Rna 35 Photosystem Ii 15 Other 15 Ribosomal Protein 25 Atp Synthase 4 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources