Clerodendrum deflexum chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_084176.1 · 3–77 bp · −
psbA · NC_084176.1 · 442–1,500 bp · −
trnK-UUU · NC_084176.1 · 1,716–4,300 bp · −
matK · NC_084176.1 · 2,017–3,558 bp · −
rps16 · NC_084176.1 · 4,951–6,096 bp · −
trnQ-UUG · NC_084176.1 · 7,337–7,408 bp · −
trnS-GCU · NC_084176.1 · 8,587–8,674 bp · −
atpA · NC_084176.1 · 10,452–11,975 bp · −
atpF · NC_084176.1 · 12,067–13,294 bp · −
atpH · NC_084176.1 · 13,670–13,915 bp · −
atpI · NC_084176.1 · 14,954–15,697 bp · −
rps2 · NC_084176.1 · 15,872–16,582 bp · −
rpoC2 · NC_084176.1 · 16,797–20,963 bp · −
rpoC1 · NC_084176.1 · 21,130–23,942 bp · −
rpoB · NC_084176.1 · 23,969–27,181 bp · −
psbM · NC_084176.1 · 30,021–30,125 bp · −
trnD-GUC · NC_084176.1 · 30,648–30,721 bp · −
trnY-GUA · NC_084176.1 · 30,838–30,921 bp · −
trnE-UUC · NC_084176.1 · 30,981–31,053 bp · −
trnS-UGA · NC_084176.1 · 35,526–35,618 bp · −
rps14 · NC_084176.1 · 36,808–37,110 bp · −
psaB · NC_084176.1 · 37,233–39,437 bp · −
psaA · NC_084176.1 · 39,463–41,715 bp · −
pafI · NC_084176.1 · 42,436–44,374 bp · −
rps4 · NC_084176.1 · 45,462–46,067 bp · −
trnT-UGU · NC_084176.1 · 46,445–46,517 bp · −
ndhJ · NC_084176.1 · 48,783–49,259 bp · −
ndhK · NC_084176.1 · 49,360–50,109 bp · −
ndhC · NC_084176.1 · 50,100–50,462 bp · −
trnV-UAC · NC_084176.1 · 50,607–51,269 bp · −
atpE · NC_084176.1 · 51,759–52,160 bp · −
atpB · NC_084176.1 · 52,157–53,653 bp · −
psbJ · NC_084176.1 · 63,138–63,260 bp · −
psbL · NC_084176.1 · 63,394–63,510 bp · −
psbF · NC_084176.1 · 63,534–63,653 bp · −
psbE · NC_084176.1 · 63,668–63,919 bp · −
trnW-CCA · NC_084176.1 · 65,343–65,416 bp · −
trnP-UGG · NC_084176.1 · 65,584–65,657 bp · −
rpl20 · NC_084176.1 · 67,462–67,848 bp · −
rps12 · NC_084176.1 · 68,666–68,776 bp · −
rps12 · NC_084176.1 · 96,064–96,860 bp · −
clpP1 · NC_084176.1 · 68,905–70,862 bp · −
pbf1 · NC_084176.1 · 73,156–73,287 bp · −
rpoA · NC_084176.1 · 76,717–77,730 bp · −
rps11 · NC_084176.1 · 77,802–78,218 bp · −
rpl36 · NC_084176.1 · 78,320–78,433 bp · −
infA · NC_084176.1 · 78,529–78,762 bp · −
rps8 · NC_084176.1 · 78,889–79,293 bp · −
rpl14 · NC_084176.1 · 79,464–79,832 bp · −
rpl16 · NC_084176.1 · 79,941–81,205 bp · −
rps3 · NC_084176.1 · 81,365–82,021 bp · −
rpl22 · NC_084176.1 · 82,006–82,473 bp · −
rps19 · NC_084176.1 · 82,529–82,807 bp · −
rpl2 · NC_084176.1 · 82,861–84,352 bp · −
rpl23 · NC_084176.1 · 84,371–84,652 bp · −
trnI-CAU · NC_084176.1 · 84,818–84,891 bp · −
trnL-CAA · NC_084176.1 · 92,426–92,506 bp · −
ndhB · NC_084176.1 · 93,056–95,267 bp · −
rps7 · NC_084176.1 · 95,543–96,010 bp · −
trnN-GUU · NC_084176.1 · 106,946–107,017 bp · −
ndhF · NC_084176.1 · 108,443–110,668 bp · −
ndhD · NC_084176.1 · 113,216–114,718 bp · −
psaC · NC_084176.1 · 114,845–115,090 bp · −
ndhE · NC_084176.1 · 115,341–115,646 bp · −
ndhG · NC_084176.1 · 115,852–116,382 bp · −
ndhI · NC_084176.1 · 116,733–117,239 bp · −
ndhA · NC_084176.1 · 117,315–119,316 bp · −
ndhH · NC_084176.1 · 119,318–120,499 bp · −
rps15 · NC_084176.1 · 120,596–120,868 bp · −
ycf1 · NC_084176.1 · 121,252–126,822 bp · −
trnR-ACG · NC_084176.1 · 127,799–127,872 bp · −
rrn5 · NC_084176.1 · 128,124–128,244 bp · −
rrn4.5 · NC_084176.1 · 128,505–128,607 bp · −
trnA-UGC · NC_084176.1 · 131,677–132,556 bp · −
trnI-GAU · NC_084176.1 · 132,621–133,640 bp · −
rrn16 · NC_084176.1 · 133,938–135,428 bp · −
trnV-GAC · NC_084176.1 · 135,656–135,727 bp · −
ycf2 · NC_084176.1 · 142,368–149,201 bp · −
psbK · NC_084176.1 · 7,771–7,956 bp · +
psbI · NC_084176.1 · 8,365–8,475 bp · +
trnG-UCC · NC_084176.1 · 9,326–10,091 bp · +
trnR-UCU · NC_084176.1 · 10,276–10,347 bp · +
trnC-GCA · NC_084176.1 · 28,369–28,439 bp · +
petN · NC_084176.1 · 29,002–29,091 bp · +
trnT-GGU · NC_084176.1 · 31,601–31,672 bp · +
psbD · NC_084176.1 · 32,835–33,896 bp · +
psbC · NC_084176.1 · 33,880–35,265 bp · +
psbZ · NC_084176.1 · 35,947–36,135 bp · +
trnG-GCC · NC_084176.1 · 36,355–36,425 bp · +
trnS-GGA · NC_084176.1 · 45,069–45,155 bp · +
trnL-UAA · NC_084176.1 · 47,220–47,785 bp · +
trnF-GAA · NC_084176.1 · 48,090–48,162 bp · +
trnM-CAU · NC_084176.1 · 51,450–51,522 bp · +
rbcL · NC_084176.1 · 54,439–55,878 bp · +
accD · NC_084176.1 · 56,592–58,073 bp · +
psaI · NC_084176.1 · 58,683–58,793 bp · +
pafII · NC_084176.1 · 59,173–59,727 bp · +
cemA · NC_084176.1 · 60,383–61,072 bp · +
petA · NC_084176.1 · 61,281–62,243 bp · +
petL · NC_084176.1 · 64,835–64,930 bp · +
petG · NC_084176.1 · 65,107–65,220 bp · +
psaJ · NC_084176.1 · 65,935–66,063 bp · +
rpl33 · NC_084176.1 · 66,547–66,747 bp · +
rps18 · NC_084176.1 · 66,921–67,226 bp · +
rps12 · NC_084176.1 · 137,321–138,117 bp · +
psbB · NC_084176.1 · 71,284–72,810 bp · +
psbT · NC_084176.1 · 72,988–73,095 bp · +
psbH · NC_084176.1 · 73,399–73,620 bp · +
petB · NC_084176.1 · 73,742–75,121 bp · +
petD · NC_084176.1 · 75,310–76,527 bp · +
ycf2 · NC_084176.1 · 84,980–91,813 bp · +
trnV-GAC · NC_084176.1 · 98,454–98,525 bp · +
rrn16 · NC_084176.1 · 98,753–100,243 bp · +
trnI-GAU · NC_084176.1 · 100,541–101,560 bp · +
trnA-UGC · NC_084176.1 · 101,625–102,504 bp · +
rrn4.5 · NC_084176.1 · 105,574–105,676 bp · +
rrn5 · NC_084176.1 · 105,937–106,057 bp · +
trnR-ACG · NC_084176.1 · 106,309–106,382 bp · +
ycf1 · NC_084176.1 · 107,359–108,453 bp · +
rpl32 · NC_084176.1 · 111,205–111,381 bp · +
trnL-UAG · NC_084176.1 · 111,837–111,916 bp · +
ccsA · NC_084176.1 · 112,005–112,970 bp · +
trnN-GUU · NC_084176.1 · 127,164–127,235 bp · +
rps7 · NC_084176.1 · 138,171–138,638 bp · +
ndhB · NC_084176.1 · 138,914–141,125 bp · +
trnL-CAA · NC_084176.1 · 141,675–141,755 bp · +
trnI-CAU · NC_084176.1 · 149,290–149,363 bp · +
rpl23 · NC_084176.1 · 149,529–149,810 bp · +
rpl2 · NC_084176.1 · 149,829–151,320 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Clerodendrum deflexum
ANNOTATED PLASTOME
NC_084176.1
151,414 bp · 128 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37854 75707 113560 151414 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
129 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 77 75 Locate
psbA gene − 442 1500 1059 Locate
trnK-UUU gene − 1716 4300 2585 Locate
matK gene − 2017 3558 1542 Locate
rps16 gene − 4951 6096 1146 Locate
trnQ-UUG gene − 7337 7408 72 Locate
psbK gene + 7771 7956 186 Locate
psbI gene + 8365 8475 111 Locate
trnS-GCU gene − 8587 8674 88 Locate
trnG-UCC gene + 9326 10091 766 Locate
trnR-UCU gene + 10276 10347 72 Locate
atpA gene − 10452 11975 1524 Locate
atpF gene − 12067 13294 1228 Locate
atpH gene − 13670 13915 246 Locate
atpI gene − 14954 15697 744 Locate
rps2 gene − 15872 16582 711 Locate
rpoC2 gene − 16797 20963 4167 Locate
rpoC1 gene − 21130 23942 2813 Locate
rpoB gene − 23969 27181 3213 Locate
trnC-GCA gene + 28369 28439 71 Locate
petN gene + 29002 29091 90 Locate
psbM gene − 30021 30125 105 Locate
trnD-GUC gene − 30648 30721 74 Locate
trnY-GUA gene − 30838 30921 84 Locate
trnE-UUC gene − 30981 31053 73 Locate
trnT-GGU gene + 31601 31672 72 Locate
psbD gene + 32835 33896 1062 Locate
psbC gene + 33880 35265 1386 Locate
trnS-UGA gene − 35526 35618 93 Locate
psbZ gene + 35947 36135 189 Locate
trnG-GCC gene + 36355 36425 71 Locate
rps14 gene − 36808 37110 303 Locate
psaB gene − 37233 39437 2205 Locate
psaA gene − 39463 41715 2253 Locate
pafI gene − 42436 44374 1939 Locate
trnS-GGA gene + 45069 45155 87 Locate
rps4 gene − 45462 46067 606 Locate
trnT-UGU gene − 46445 46517 73 Locate
trnL-UAA gene + 47220 47785 566 Locate
trnF-GAA gene + 48090 48162 73 Locate
ndhJ gene − 48783 49259 477 Locate
ndhK gene − 49360 50109 750 Locate
ndhC gene − 50100 50462 363 Locate
trnV-UAC gene − 50607 51269 663 Locate
trnM-CAU gene + 51450 51522 73 Locate
atpE gene − 51759 52160 402 Locate
atpB gene − 52157 53653 1497 Locate
rbcL gene + 54439 55878 1440 Locate
accD gene + 56592 58073 1482 Locate
psaI gene + 58683 58793 111 Locate
pafII gene + 59173 59727 555 Locate
cemA gene + 60383 61072 690 Locate
petA gene + 61281 62243 963 Locate
psbJ gene − 63138 63260 123 Locate
psbL gene − 63394 63510 117 Locate
psbF gene − 63534 63653 120 Locate
psbE gene − 63668 63919 252 Locate
petL gene + 64835 64930 96 Locate
petG gene + 65107 65220 114 Locate
trnW-CCA gene − 65343 65416 74 Locate
trnP-UGG gene − 65584 65657 74 Locate
psaJ gene + 65935 66063 129 Locate
rpl33 gene + 66547 66747 201 Locate
rps18 gene + 66921 67226 306 Locate
rpl20 gene − 67462 67848 387 Locate
rps12 gene − 68666 68776 111 Locate
clpP1 gene − 68905 70862 1958 Locate
psbB gene + 71284 72810 1527 Locate
psbT gene + 72988 73095 108 Locate
pbf1 gene − 73156 73287 132 Locate
psbH gene + 73399 73620 222 Locate
petB gene + 73742 75121 1380 Locate
petD gene + 75310 76527 1218 Locate
rpoA gene − 76717 77730 1014 Locate
rps11 gene − 77802 78218 417 Locate
rpl36 gene − 78320 78433 114 Locate
infA gene − 78529 78762 234 Locate
rps8 gene − 78889 79293 405 Locate
rpl14 gene − 79464 79832 369 Locate
rpl16 gene − 79941 81205 1265 Locate
rps3 gene − 81365 82021 657 Locate
rpl22 gene − 82006 82473 468 Locate
rps19 gene − 82529 82807 279 Locate
rpl2 gene − 82861 84352 1492 Locate
rpl23 gene − 84371 84652 282 Locate
trnI-CAU gene − 84818 84891 74 Locate
ycf2 gene + 84980 91813 6834 Locate
trnL-CAA gene − 92426 92506 81 Locate
ndhB gene − 93056 95267 2212 Locate
rps7 gene − 95543 96010 468 Locate
rps12 gene − 96064 96860 797 Locate
trnV-GAC gene + 98454 98525 72 Locate
rrn16 gene + 98753 100243 1491 Locate
trnI-GAU gene + 100541 101560 1020 Locate
trnA-UGC gene + 101625 102504 880 Locate
rrn4.5 gene + 105574 105676 103 Locate
rrn5 gene + 105937 106057 121 Locate
trnR-ACG gene + 106309 106382 74 Locate
trnN-GUU gene − 106946 107017 72 Locate
ycf1 gene + 107359 108453 1095 Locate
ndhF gene − 108443 110668 2226 Locate
rpl32 gene + 111205 111381 177 Locate
trnL-UAG gene + 111837 111916 80 Locate
ccsA gene + 112005 112970 966 Locate
ndhD gene − 113216 114718 1503 Locate
psaC gene − 114845 115090 246 Locate
ndhE gene − 115341 115646 306 Locate
ndhG gene − 115852 116382 531 Locate
ndhI gene − 116733 117239 507 Locate
ndhA gene − 117315 119316 2002 Locate
ndhH gene − 119318 120499 1182 Locate
rps15 gene − 120596 120868 273 Locate
ycf1 gene − 121252 126822 5571 Locate
trnN-GUU gene + 127164 127235 72 Locate
trnR-ACG gene − 127799 127872 74 Locate
rrn5 gene − 128124 128244 121 Locate
rrn4.5 gene − 128505 128607 103 Locate
trnA-UGC gene − 131677 132556 880 Locate
trnI-GAU gene − 132621 133640 1020 Locate
rrn16 gene − 133938 135428 1491 Locate
trnV-GAC gene − 135656 135727 72 Locate
rps12 gene + 137321 138117 797 Locate
rps7 gene + 138171 138638 468 Locate
ndhB gene + 138914 141125 2212 Locate
trnL-CAA gene + 141675 141755 81 Locate
ycf2 gene − 142368 149201 6834 Locate
trnI-CAU gene + 149290 149363 74 Locate
rpl23 gene + 149529 149810 282 Locate
rpl2 gene + 149829 151320 1492 Locate
Status Available
Accession NC_084176.1
Length 151,414 bp
GC content 38.2%
Annotated genes 128
Gene sequence records 8
Translation Rna 36 Photosystem Ii 14 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 6
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources