Clinopodium abyssinicum chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH(GUG) · NC_058327.1 · 6–80 bp · −
psbA · NC_058327.1 · 403–1,461 bp · −
trnK(UUU) · NC_058327.1 · 1,682–4,268 bp · −
matK · NC_058327.1 · 1,998–3,527 bp · −
rps16 · NC_058327.1 · 4,793–5,936 bp · −
trnQ(UUG) · NC_058327.1 · 6,899–6,970 bp · −
trnS(GCU) · NC_058327.1 · 8,126–8,213 bp · −
atpA · NC_058327.1 · 10,038–11,561 bp · −
atpF · NC_058327.1 · 11,654–12,909 bp · −
atpH · NC_058327.1 · 13,177–13,422 bp · −
atpI · NC_058327.1 · 14,286–15,029 bp · −
rps2 · NC_058327.1 · 15,254–15,964 bp · −
rpoC2 · NC_058327.1 · 16,192–20,391 bp · −
rpoC1 · NC_058327.1 · 20,553–23,385 bp · −
rpoB · NC_058327.1 · 23,391–26,603 bp · −
psbM · NC_058327.1 · 29,012–29,116 bp · −
trnD(GUC) · NC_058327.1 · 29,635–29,708 bp · −
trnY(GUA) · NC_058327.1 · 29,826–29,909 bp · −
trnE(UUC) · NC_058327.1 · 29,990–30,059 bp · −
trnT(GGU) · NC_058327.1 · 30,538–30,609 bp · −
trnS(UGA) · NC_058327.1 · 34,645–34,737 bp · −
trnfM(CAU) · NC_058327.1 · 35,761–35,834 bp · −
rps14 · NC_058327.1 · 35,984–36,286 bp · −
psaB · NC_058327.1 · 36,409–38,613 bp · −
psaA · NC_058327.1 · 38,639–40,891 bp · −
ycf3 · NC_058327.1 · 41,675–43,619 bp · −
rps4 · NC_058327.1 · 44,812–45,417 bp · −
trnT(UGU) · NC_058327.1 · 45,786–45,858 bp · −
ndhJ · NC_058327.1 · 48,128–48,604 bp · −
ndhK · NC_058327.1 · 48,715–49,392 bp · −
ndhC · NC_058327.1 · 49,444–49,806 bp · −
trnV(UAC) · NC_058327.1 · 50,762–51,406 bp · −
atpE · NC_058327.1 · 51,855–52,256 bp · −
atpB · NC_058327.1 · 52,253–53,743 bp · −
psbJ · NC_058327.1 · 63,262–63,384 bp · −
psbL · NC_058327.1 · 63,519–63,635 bp · −
psbF · NC_058327.1 · 63,659–63,778 bp · −
psbE · NC_058327.1 · 63,793–64,044 bp · −
trnW(CCA) · NC_058327.1 · 65,399–65,472 bp · −
trnP(UGG) · NC_058327.1 · 65,649–65,722 bp · −
rpl20 · NC_058327.1 · 67,508–67,894 bp · −
rps12 · NC_058327.1 · 68,712–68,825 bp · −
rps12 · NC_058327.1 · 96,065–96,858 bp · −
clpP · NC_058327.1 · 68,950–70,875 bp · −
psbN · NC_058327.1 · 73,223–73,354 bp · −
rpoA · NC_058327.1 · 76,750–77,757 bp · −
rps11 · NC_058327.1 · 77,829–78,245 bp · −
rpl36 · NC_058327.1 · 78,355–78,468 bp · −
infA · NC_058327.1 · 78,564–78,797 bp · −
rps8 · NC_058327.1 · 78,924–79,328 bp · −
rpl14 · NC_058327.1 · 79,508–79,876 bp · −
rpl16 · NC_058327.1 · 80,008–81,282 bp · −
rps3 · NC_058327.1 · 81,427–82,089 bp · −
rpl22 · NC_058327.1 · 82,074–82,541 bp · −
rps19 · NC_058327.1 · 82,612–82,890 bp · −
rpl2 · NC_058327.1 · 82,951–84,440 bp · −
rpl23 · NC_058327.1 · 84,459–84,740 bp · −
trnI(CAU) · NC_058327.1 · 84,906–84,979 bp · −
trnL(CAA) · NC_058327.1 · 92,430–92,510 bp · −
ndhB · NC_058327.1 · 93,071–95,278 bp · −
rps7 · NC_058327.1 · 95,544–96,011 bp · −
trnN(GUU) · NC_058327.1 · 106,948–107,019 bp · −
ndhF · NC_058327.1 · 108,373–110,604 bp · −
ndhD · NC_058327.1 · 113,349–114,878 bp · −
psaC · NC_058327.1 · 114,972–115,217 bp · −
ndhE · NC_058327.1 · 115,458–115,763 bp · −
ndhG · NC_058327.1 · 115,987–116,517 bp · −
ndhI · NC_058327.1 · 116,905–117,411 bp · −
ndhA · NC_058327.1 · 117,487–119,577 bp · −
ndhH · NC_058327.1 · 119,579–120,760 bp · −
rps15 · NC_058327.1 · 120,860–121,132 bp · −
ycf1 · NC_058327.1 · 121,544–126,994 bp · −
trnR(ACG) · NC_058327.1 · 127,921–127,993 bp · −
rrn5S · NC_058327.1 · 128,237–128,357 bp · −
rrn4.5S · NC_058327.1 · 128,618–128,720 bp · −
rrn23S · NC_058327.1 · 128,819–131,629 bp · −
trnA(UGC) · NC_058327.1 · 131,812–132,681 bp · −
trnI(GAU) · NC_058327.1 · 132,751–133,772 bp · −
rrn16S · NC_058327.1 · 134,071–135,561 bp · −
trnV(GAC) · NC_058327.1 · 135,788–135,859 bp · −
ycf15 · NC_058327.1 · 142,169–142,417 bp · −
ycf2 · NC_058327.1 · 142,508–149,275 bp · −
psbK · NC_058327.1 · 7,351–7,536 bp · +
psbI · NC_058327.1 · 7,929–8,039 bp · +
trnG(UCC) · NC_058327.1 · 8,924–9,676 bp · +
trnR(UCU) · NC_058327.1 · 9,855–9,929 bp · +
trnC(GCA) · NC_058327.1 · 27,743–27,820 bp · +
petN · NC_058327.1 · 27,974–28,063 bp · +
psbD · NC_058327.1 · 31,969–33,030 bp · +
psbC · NC_058327.1 · 32,978–34,399 bp · +
psbZ · NC_058327.1 · 35,084–35,272 bp · +
trnG(GCC) · NC_058327.1 · 35,531–35,601 bp · +
trnS(GGA) · NC_058327.1 · 44,443–44,529 bp · +
trnL(UAA) · NC_058327.1 · 46,539–47,122 bp · +
trnF(GAA) · NC_058327.1 · 47,406–47,478 bp · +
trnM(CAU) · NC_058327.1 · 51,587–51,659 bp · +
rbcL · NC_058327.1 · 54,522–55,955 bp · +
accD · NC_058327.1 · 56,652–58,133 bp · +
psaI · NC_058327.1 · 58,615–58,725 bp · +
ycf4 · NC_058327.1 · 59,170–59,724 bp · +
cemA · NC_058327.1 · 60,371–61,060 bp · +
petA · NC_058327.1 · 61,274–62,236 bp · +
petL · NC_058327.1 · 64,915–65,010 bp · +
petG · NC_058327.1 · 65,180–65,293 bp · +
psaJ · NC_058327.1 · 66,006–66,140 bp · +
rpl33 · NC_058327.1 · 66,594–66,797 bp · +
rps18 · NC_058327.1 · 66,969–67,274 bp · +
rps12 · NC_058327.1 · 137,485–138,278 bp · +
psbB · NC_058327.1 · 71,332–72,858 bp · +
psbT · NC_058327.1 · 73,053–73,154 bp · +
psbH · NC_058327.1 · 73,442–73,681 bp · +
petB · NC_058327.1 · 73,807–75,189 bp · +
petD · NC_058327.1 · 75,377–76,563 bp · +
ycf2 · NC_058327.1 · 85,068–91,835 bp · +
ycf15 · NC_058327.1 · 91,926–92,174 bp · +
trnV(GAC) · NC_058327.1 · 98,484–98,555 bp · +
rrn16S · NC_058327.1 · 98,782–100,272 bp · +
trnI(GAU) · NC_058327.1 · 100,571–101,592 bp · +
trnA(UGC) · NC_058327.1 · 101,663–102,531 bp · +
rrn23S · NC_058327.1 · 102,714–105,524 bp · +
rrn4.5S · NC_058327.1 · 105,623–105,725 bp · +
rrn5S · NC_058327.1 · 105,986–106,106 bp · +
trnR(ACG) · NC_058327.1 · 106,350–106,422 bp · +
ycf1 · NC_058327.1 · 107,349–108,479 bp · +
rpl32 · NC_058327.1 · 111,067–111,252 bp · +
trnL(UAG) · NC_058327.1 · 111,955–112,039 bp · +
ccsA · NC_058327.1 · 112,142–113,119 bp · +
trnN(GUU) · NC_058327.1 · 127,324–127,395 bp · +
rps7 · NC_058327.1 · 138,332–138,799 bp · +
ndhB · NC_058327.1 · 139,065–141,272 bp · +
trnL(CAA) · NC_058327.1 · 141,833–141,913 bp · +
trnI(CAU) · NC_058327.1 · 149,364–149,437 bp · +
rpl23 · NC_058327.1 · 149,603–149,884 bp · +
rpl2 · NC_058327.1 · 149,903–151,392 bp · +
rps19 · NC_058327.1 · 151,453–151,513 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Clinopodium abyssinicum
ANNOTATED PLASTOME
NC_058327.1
151,513 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37878 75756 113635 151513 bp
Forward strand 5′ → 3′
psbK psbI trnG(UCC) trnR(UCU) trnC(GCA) petN psbD psbC psbZ trnG(GCC) trnS(GGA) trnL(UAA) trnF(GAA) trnM(CAU) rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV(GAC) rrn16S trnI(GAU) trnA(UGC) rrn23S rrn4.5S rrn5S trnR(ACG) ycf1 rpl32 trnL(UAG) ccsA trnN(GUU) rps12 rps7 ndhB trnL(CAA) trnI(CAU) rpl23 rpl2 rps19
trnH(GUG) psbA trnK(UUU) matK rps16 trnQ(UUG) trnS(GCU) atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD(GUC) trnY(GUA) trnE(UUC) trnT(GGU) trnS(UGA) trnfM(CAU) rps14 psaB psaA ycf3 rps4 trnT(UGU) ndhJ ndhK ndhC trnV(UAC) atpE atpB psbJ psbL psbF psbE trnW(CCA) trnP(UGG) rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI(CAU) trnL(CAA) ndhB rps7 rps12 trnN(GUU) ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR(ACG) rrn5S rrn4.5S rrn23S trnA(UGC) trnI(GAU) rrn16S trnV(GAC) ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH(GUG) gene − 6 80 75 Locate
psbA gene − 403 1461 1059 Locate
trnK(UUU) gene − 1682 4268 2587 Locate
matK gene − 1998 3527 1530 Locate
rps16 gene − 4793 5936 1144 Locate
trnQ(UUG) gene − 6899 6970 72 Locate
psbK gene + 7351 7536 186 Locate
psbI gene + 7929 8039 111 Locate
trnS(GCU) gene − 8126 8213 88 Locate
trnG(UCC) gene + 8924 9676 753 Locate
trnR(UCU) gene + 9855 9929 75 Locate
atpA gene − 10038 11561 1524 Locate
atpF gene − 11654 12909 1256 Locate
atpH gene − 13177 13422 246 Locate
atpI gene − 14286 15029 744 Locate
rps2 gene − 15254 15964 711 Locate
rpoC2 gene − 16192 20391 4200 Locate
rpoC1 gene − 20553 23385 2833 Locate
rpoB gene − 23391 26603 3213 Locate
trnC(GCA) gene + 27743 27820 78 Locate
petN gene + 27974 28063 90 Locate
psbM gene − 29012 29116 105 Locate
trnD(GUC) gene − 29635 29708 74 Locate
trnY(GUA) gene − 29826 29909 84 Locate
trnE(UUC) gene − 29990 30059 70 Locate
trnT(GGU) gene − 30538 30609 72 Locate
psbD gene + 31969 33030 1062 Locate
psbC gene + 32978 34399 1422 Locate
trnS(UGA) gene − 34645 34737 93 Locate
psbZ gene + 35084 35272 189 Locate
trnG(GCC) gene + 35531 35601 71 Locate
trnfM(CAU) gene − 35761 35834 74 Locate
rps14 gene − 35984 36286 303 Locate
psaB gene − 36409 38613 2205 Locate
psaA gene − 38639 40891 2253 Locate
ycf3 gene − 41675 43619 1945 Locate
trnS(GGA) gene + 44443 44529 87 Locate
rps4 gene − 44812 45417 606 Locate
trnT(UGU) gene − 45786 45858 73 Locate
trnL(UAA) gene + 46539 47122 584 Locate
trnF(GAA) gene + 47406 47478 73 Locate
ndhJ gene − 48128 48604 477 Locate
ndhK gene − 48715 49392 678 Locate
ndhC gene − 49444 49806 363 Locate
trnV(UAC) gene − 50762 51406 645 Locate
trnM(CAU) gene + 51587 51659 73 Locate
atpE gene − 51855 52256 402 Locate
atpB gene − 52253 53743 1491 Locate
rbcL gene + 54522 55955 1434 Locate
accD gene + 56652 58133 1482 Locate
psaI gene + 58615 58725 111 Locate
ycf4 gene + 59170 59724 555 Locate
cemA gene + 60371 61060 690 Locate
petA gene + 61274 62236 963 Locate
psbJ gene − 63262 63384 123 Locate
psbL gene − 63519 63635 117 Locate
psbF gene − 63659 63778 120 Locate
psbE gene − 63793 64044 252 Locate
petL gene + 64915 65010 96 Locate
petG gene + 65180 65293 114 Locate
trnW(CCA) gene − 65399 65472 74 Locate
trnP(UGG) gene − 65649 65722 74 Locate
psaJ gene + 66006 66140 135 Locate
rpl33 gene + 66594 66797 204 Locate
rps18 gene + 66969 67274 306 Locate
rpl20 gene − 67508 67894 387 Locate
rps12 gene − 68712 68825 114 Locate
clpP gene − 68950 70875 1926 Locate
psbB gene + 71332 72858 1527 Locate
psbT gene + 73053 73154 102 Locate
psbN gene − 73223 73354 132 Locate
psbH gene + 73442 73681 240 Locate
petB gene + 73807 75189 1383 Locate
petD gene + 75377 76563 1187 Locate
rpoA gene − 76750 77757 1008 Locate
rps11 gene − 77829 78245 417 Locate
rpl36 gene − 78355 78468 114 Locate
infA gene − 78564 78797 234 Locate
rps8 gene − 78924 79328 405 Locate
rpl14 gene − 79508 79876 369 Locate
rpl16 gene − 80008 81282 1275 Locate
rps3 gene − 81427 82089 663 Locate
rpl22 gene − 82074 82541 468 Locate
rps19 gene − 82612 82890 279 Locate
rpl2 gene − 82951 84440 1490 Locate
rpl23 gene − 84459 84740 282 Locate
trnI(CAU) gene − 84906 84979 74 Locate
ycf2 gene + 85068 91835 6768 Locate
ycf15 gene + 91926 92174 249 Locate
trnL(CAA) gene − 92430 92510 81 Locate
ndhB gene − 93071 95278 2208 Locate
rps7 gene − 95544 96011 468 Locate
rps12 gene − 96065 96858 794 Locate
trnV(GAC) gene + 98484 98555 72 Locate
rrn16S gene + 98782 100272 1491 Locate
trnI(GAU) gene + 100571 101592 1022 Locate
trnA(UGC) gene + 101663 102531 869 Locate
rrn23S gene + 102714 105524 2811 Locate
rrn4.5S gene + 105623 105725 103 Locate
rrn5S gene + 105986 106106 121 Locate
trnR(ACG) gene + 106350 106422 73 Locate
trnN(GUU) gene − 106948 107019 72 Locate
ycf1 gene + 107349 108479 1131 Locate
ndhF gene − 108373 110604 2232 Locate
rpl32 gene + 111067 111252 186 Locate
trnL(UAG) gene + 111955 112039 85 Locate
ccsA gene + 112142 113119 978 Locate
ndhD gene − 113349 114878 1530 Locate
psaC gene − 114972 115217 246 Locate
ndhE gene − 115458 115763 306 Locate
ndhG gene − 115987 116517 531 Locate
ndhI gene − 116905 117411 507 Locate
ndhA gene − 117487 119577 2091 Locate
ndhH gene − 119579 120760 1182 Locate
rps15 gene − 120860 121132 273 Locate
ycf1 gene − 121544 126994 5451 Locate
trnN(GUU) gene + 127324 127395 72 Locate
trnR(ACG) gene − 127921 127993 73 Locate
rrn5S gene − 128237 128357 121 Locate
rrn4.5S gene − 128618 128720 103 Locate
rrn23S gene − 128819 131629 2811 Locate
trnA(UGC) gene − 131812 132681 870 Locate
trnI(GAU) gene − 132751 133772 1022 Locate
rrn16S gene − 134071 135561 1491 Locate
trnV(GAC) gene − 135788 135859 72 Locate
rps12 gene + 137485 138278 794 Locate
rps7 gene + 138332 138799 468 Locate
ndhB gene + 139065 141272 2208 Locate
trnL(CAA) gene + 141833 141913 81 Locate
ycf15 gene − 142169 142417 249 Locate
ycf2 gene − 142508 149275 6768 Locate
trnI(CAU) gene + 149364 149437 74 Locate
rpl23 gene + 149603 149884 282 Locate
rpl2 gene + 149903 151392 1490 Locate
rps19 gene + 151453 151513 61 Locate
Status Available
Accession NC_058327.1
Length 151,513 bp
GC content 37.8%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources