Clinopodium acinos chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP190943.1 · 11–85 bp · −
psbA · PP190943.1 · 416–1,474 bp · −
trnK-UUU · PP190943.1 · 1,694–4,285 bp · −
matK · PP190943.1 · 2,019–3,548 bp · −
rps16 · PP190943.1 · 4,829–5,976 bp · −
trnQ-UUG · PP190943.1 · 6,981–7,052 bp · −
trnS-GCU · PP190943.1 · 8,266–8,353 bp · −
atpA · PP190943.1 · 10,152–11,675 bp · −
atpF · PP190943.1 · 11,768–13,022 bp · −
atpH · PP190943.1 · 13,301–13,546 bp · −
atpI · PP190943.1 · 14,584–15,327 bp · −
rps2 · PP190943.1 · 15,552–16,262 bp · −
rpoC2 · PP190943.1 · 16,484–20,671 bp · −
rpoC1 · PP190943.1 · 20,844–23,655 bp · −
rpoB · PP190943.1 · 23,682–26,894 bp · −
psbM · PP190943.1 · 29,302–29,406 bp · −
trnD-GUC · PP190943.1 · 29,922–29,998 bp · −
trnY-GUA · PP190943.1 · 30,114–30,199 bp · −
trnE-UUC · PP190943.1 · 30,278–30,350 bp · −
trnS-UGA · PP190943.1 · 35,015–35,107 bp · −
trnM-CAU · PP190943.1 · 36,150–36,224 bp · −
rps14 · PP190943.1 · 36,374–36,676 bp · −
psaB · PP190943.1 · 36,802–39,006 bp · −
psaA · PP190943.1 · 39,032–41,284 bp · −
ycf3 · PP190943.1 · 42,086–44,027 bp · −
rps4 · PP190943.1 · 45,248–45,853 bp · −
trnT-UGU · PP190943.1 · 46,232–46,306 bp · −
ndhJ · PP190943.1 · 48,567–49,043 bp · −
ndhK · PP190943.1 · 49,154–49,831 bp · −
ndhC · PP190943.1 · 49,883–50,245 bp · −
trnV-UAC · PP190943.1 · 51,215–51,859 bp · −
atpE · PP190943.1 · 52,323–52,724 bp · −
atpB · PP190943.1 · 52,721–54,211 bp · −
psbJ · PP190943.1 · 63,514–63,636 bp · −
psbL · PP190943.1 · 63,771–63,887 bp · −
psbF · PP190943.1 · 63,911–64,030 bp · −
psbE · PP190943.1 · 64,045–64,296 bp · −
trnW-CCA · PP190943.1 · 65,669–65,742 bp · −
trnP-UGG · PP190943.1 · 65,914–65,989 bp · −
rpl20 · PP190943.1 · 67,739–68,125 bp · −
rps12 · PP190943.1 · 68,926–69,039 bp · −
rps12 · PP190943.1 · 96,369–97,162 bp · −
clpP1 · PP190943.1 · 69,162–71,088 bp · −
psbN · PP190943.1 · 73,440–73,571 bp · −
rpoA · PP190943.1 · 76,992–77,999 bp · −
rps11 · PP190943.1 · 78,070–78,486 bp · −
rpl36 · PP190943.1 · 78,596–78,709 bp · −
infA · PP190943.1 · 78,805–79,038 bp · −
rps8 · PP190943.1 · 79,164–79,568 bp · −
rpl14 · PP190943.1 · 79,751–80,119 bp · −
rpl16 · PP190943.1 · 80,251–81,523 bp · −
rps3 · PP190943.1 · 81,674–82,336 bp · −
rpl22 · PP190943.1 · 82,321–82,788 bp · −
rps19 · PP190943.1 · 82,858–83,136 bp · −
rpl2 · PP190943.1 · 83,196–84,687 bp · −
rpl23 · PP190943.1 · 84,706–84,987 bp · −
trnM-CAU · PP190943.1 · 85,152–85,226 bp · −
trnL-CAA · PP190943.1 · 92,741–92,823 bp · −
ndhB · PP190943.1 · 93,383–95,582 bp · −
rps7 · PP190943.1 · 95,848–96,315 bp · −
trnN-GUU · PP190943.1 · 107,247–107,320 bp · −
ndhF · PP190943.1 · 108,673–110,904 bp · −
ndhD · PP190943.1 · 113,682–115,184 bp · −
psaC · PP190943.1 · 115,314–115,559 bp · −
ndhE · PP190943.1 · 115,805–116,110 bp · −
ndhG · PP190943.1 · 116,325–116,855 bp · −
ndhI · PP190943.1 · 117,242–117,748 bp · −
ndhA · PP190943.1 · 117,824–119,915 bp · −
ndhH · PP190943.1 · 119,917–121,152 bp · −
rps15 · PP190943.1 · 121,198–121,470 bp · −
ycf1 · PP190943.1 · 121,921–127,527 bp · −
trnR-ACG · PP190943.1 · 128,341–128,415 bp · −
rrn5 · PP190943.1 · 128,659–128,779 bp · −
rrn4.5 · PP190943.1 · 129,040–129,142 bp · −
rrn23 · PP190943.1 · 129,241–132,051 bp · −
trnA-UGC · PP190943.1 · 132,216–133,093 bp · −
trnI · PP190943.1 · 133,164–134,184 bp · −
rrn16 · PP190943.1 · 134,483–135,973 bp · −
trnV-GAC · PP190943.1 · 136,200–136,271 bp · −
ycf15 · PP190943.1 · 142,579–142,827 bp · −
ycf2 · PP190943.1 · 142,918–149,730 bp · −
psbK · PP190943.1 · 7,433–7,618 bp · +
psbI · PP190943.1 · 8,011–8,121 bp · +
trnG-UCC · PP190943.1 · 9,046–9,798 bp · +
trnR-UCU · PP190943.1 · 9,972–10,043 bp · +
trnC-GCA · PP190943.1 · 28,027–28,097 bp · +
petN · PP190943.1 · 28,258–28,347 bp · +
trnT-GGU · PP190943.1 · 30,901–30,974 bp · +
psbD · PP190943.1 · 32,340–33,401 bp · +
psbC · PP190943.1 · 33,349–34,770 bp · +
psbZ · PP190943.1 · 35,446–35,634 bp · +
trnG-GCC · PP190943.1 · 35,904–35,975 bp · +
trnS-GGA · PP190943.1 · 44,874–44,961 bp · +
trnL-UAA · PP190943.1 · 46,987–47,563 bp · +
trnF-GAA · PP190943.1 · 47,856–47,929 bp · +
trnM-CAU · PP190943.1 · 52,040–52,112 bp · +
rbcL · PP190943.1 · 54,973–56,427 bp · +
accD · PP190943.1 · 57,183–58,664 bp · +
psaI · PP190943.1 · 59,137–59,247 bp · +
ycf4 · PP190943.1 · 59,698–60,252 bp · +
cemA · PP190943.1 · 60,632–61,321 bp · +
petA · PP190943.1 · 61,540–62,502 bp · +
petL · PP190943.1 · 65,176–65,271 bp · +
petG · PP190943.1 · 65,441–65,554 bp · +
psaJ · PP190943.1 · 66,264–66,398 bp · +
rpl33 · PP190943.1 · 66,847–67,050 bp · +
rps18 · PP190943.1 · 67,201–67,506 bp · +
rps12 · PP190943.1 · 137,903–138,696 bp · +
psbB · PP190943.1 · 71,547–73,073 bp · +
psbT · PP190943.1 · 73,270–73,371 bp · +
psbH · PP190943.1 · 73,677–73,898 bp · +
petB · PP190943.1 · 74,032–75,411 bp · +
petD · PP190943.1 · 75,599–76,787 bp · +
ycf2 · PP190943.1 · 85,335–92,147 bp · +
ycf15 · PP190943.1 · 92,238–92,486 bp · +
trnV-GAC · PP190943.1 · 98,794–98,865 bp · +
rrn16 · PP190943.1 · 99,092–100,582 bp · +
trnI · PP190943.1 · 100,881–101,901 bp · +
trnA-UGC · PP190943.1 · 101,972–102,849 bp · +
rrn23 · PP190943.1 · 103,014–105,824 bp · +
rrn4.5 · PP190943.1 · 105,923–106,025 bp · +
rrn5 · PP190943.1 · 106,286–106,406 bp · +
trnR-ACG · PP190943.1 · 106,650–106,724 bp · +
ycf1 · PP190943.1 · 107,649–108,779 bp · +
rpl32 · PP190943.1 · 111,347–111,517 bp · +
trnL-UAG · PP190943.1 · 112,272–112,351 bp · +
ccsA · PP190943.1 · 112,453–113,430 bp · +
trnN-GUU · PP190943.1 · 127,745–127,818 bp · +
rps7 · PP190943.1 · 138,750–139,217 bp · +
ndhB · PP190943.1 · 139,483–141,682 bp · +
trnL-CAA · PP190943.1 · 142,242–142,324 bp · +
trnM-CAU · PP190943.1 · 149,839–149,913 bp · +
rpl23 · PP190943.1 · 150,078–150,359 bp · +
rpl2 · PP190943.1 · 150,378–151,869 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Clinopodium acinos
ANNOTATED PLASTOME
PP190943.1
151,971 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37993 75986 113978 151971 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 416 1474 1059 Locate
trnK-UUU gene − 1694 4285 2592 Locate
matK gene − 2019 3548 1530 Locate
rps16 gene − 4829 5976 1148 Locate
trnQ-UUG gene − 6981 7052 72 Locate
psbK gene + 7433 7618 186 Locate
psbI gene + 8011 8121 111 Locate
trnS-GCU gene − 8266 8353 88 Locate
trnG-UCC gene + 9046 9798 753 Locate
trnR-UCU gene + 9972 10043 72 Locate
atpA gene − 10152 11675 1524 Locate
atpF gene − 11768 13022 1255 Locate
atpH gene − 13301 13546 246 Locate
atpI gene − 14584 15327 744 Locate
rps2 gene − 15552 16262 711 Locate
rpoC2 gene − 16484 20671 4188 Locate
rpoC1 gene − 20844 23655 2812 Locate
rpoB gene − 23682 26894 3213 Locate
trnC-GCA gene + 28027 28097 71 Locate
petN gene + 28258 28347 90 Locate
psbM gene − 29302 29406 105 Locate
trnD-GUC gene − 29922 29998 77 Locate
trnY-GUA gene − 30114 30199 86 Locate
trnE-UUC gene − 30278 30350 73 Locate
trnT-GGU gene + 30901 30974 74 Locate
psbD gene + 32340 33401 1062 Locate
psbC gene + 33349 34770 1422 Locate
trnS-UGA gene − 35015 35107 93 Locate
psbZ gene + 35446 35634 189 Locate
trnG-GCC gene + 35904 35975 72 Locate
trnM-CAU gene − 36150 36224 75 Locate
rps14 gene − 36374 36676 303 Locate
psaB gene − 36802 39006 2205 Locate
psaA gene − 39032 41284 2253 Locate
ycf3 gene − 42086 44027 1942 Locate
trnS-GGA gene + 44874 44961 88 Locate
rps4 gene − 45248 45853 606 Locate
trnT-UGU gene − 46232 46306 75 Locate
trnL-UAA gene + 46987 47563 577 Locate
trnF-GAA gene + 47856 47929 74 Locate
ndhJ gene − 48567 49043 477 Locate
ndhK gene − 49154 49831 678 Locate
ndhC gene − 49883 50245 363 Locate
trnV-UAC gene − 51215 51859 645 Locate
trnM-CAU gene + 52040 52112 73 Locate
atpE gene − 52323 52724 402 Locate
atpB gene − 52721 54211 1491 Locate
rbcL gene + 54973 56427 1455 Locate
accD gene + 57183 58664 1482 Locate
psaI gene + 59137 59247 111 Locate
ycf4 gene + 59698 60252 555 Locate
cemA gene + 60632 61321 690 Locate
petA gene + 61540 62502 963 Locate
psbJ gene − 63514 63636 123 Locate
psbL gene − 63771 63887 117 Locate
psbF gene − 63911 64030 120 Locate
psbE gene − 64045 64296 252 Locate
petL gene + 65176 65271 96 Locate
petG gene + 65441 65554 114 Locate
trnW-CCA gene − 65669 65742 74 Locate
trnP-UGG gene − 65914 65989 76 Locate
psaJ gene + 66264 66398 135 Locate
rpl33 gene + 66847 67050 204 Locate
rps18 gene + 67201 67506 306 Locate
rpl20 gene − 67739 68125 387 Locate
rps12 gene − 68926 69039 114 Locate
clpP1 gene − 69162 71088 1927 Locate
psbB gene + 71547 73073 1527 Locate
psbT gene + 73270 73371 102 Locate
psbN gene − 73440 73571 132 Locate
psbH gene + 73677 73898 222 Locate
petB gene + 74032 75411 1380 Locate
petD gene + 75599 76787 1189 Locate
rpoA gene − 76992 77999 1008 Locate
rps11 gene − 78070 78486 417 Locate
rpl36 gene − 78596 78709 114 Locate
infA gene − 78805 79038 234 Locate
rps8 gene − 79164 79568 405 Locate
rpl14 gene − 79751 80119 369 Locate
rpl16 gene − 80251 81523 1273 Locate
rps3 gene − 81674 82336 663 Locate
rpl22 gene − 82321 82788 468 Locate
rps19 gene − 82858 83136 279 Locate
rpl2 gene − 83196 84687 1492 Locate
rpl23 gene − 84706 84987 282 Locate
trnM-CAU gene − 85152 85226 75 Locate
ycf2 gene + 85335 92147 6813 Locate
ycf15 gene + 92238 92486 249 Locate
trnL-CAA gene − 92741 92823 83 Locate
ndhB gene − 93383 95582 2200 Locate
rps7 gene − 95848 96315 468 Locate
rps12 gene − 96369 97162 794 Locate
trnV-GAC gene + 98794 98865 72 Locate
rrn16 gene + 99092 100582 1491 Locate
trnI gene + 100881 101901 1021 Locate
trnA-UGC gene + 101972 102849 878 Locate
rrn23 gene + 103014 105824 2811 Locate
rrn4.5 gene + 105923 106025 103 Locate
rrn5 gene + 106286 106406 121 Locate
trnR-ACG gene + 106650 106724 75 Locate
trnN-GUU gene − 107247 107320 74 Locate
ycf1 gene + 107649 108779 1131 Locate
ndhF gene − 108673 110904 2232 Locate
rpl32 gene + 111347 111517 171 Locate
trnL-UAG gene + 112272 112351 80 Locate
ccsA gene + 112453 113430 978 Locate
ndhD gene − 113682 115184 1503 Locate
psaC gene − 115314 115559 246 Locate
ndhE gene − 115805 116110 306 Locate
ndhG gene − 116325 116855 531 Locate
ndhI gene − 117242 117748 507 Locate
ndhA gene − 117824 119915 2092 Locate
ndhH gene − 119917 121152 1236 Locate
rps15 gene − 121198 121470 273 Locate
ycf1 gene − 121921 127527 5607 Locate
trnN-GUU gene + 127745 127818 74 Locate
trnR-ACG gene − 128341 128415 75 Locate
rrn5 gene − 128659 128779 121 Locate
rrn4.5 gene − 129040 129142 103 Locate
rrn23 gene − 129241 132051 2811 Locate
trnA-UGC gene − 132216 133093 878 Locate
trnI gene − 133164 134184 1021 Locate
rrn16 gene − 134483 135973 1491 Locate
trnV-GAC gene − 136200 136271 72 Locate
rps12 gene + 137903 138696 794 Locate
rps7 gene + 138750 139217 468 Locate
ndhB gene + 139483 141682 2200 Locate
trnL-CAA gene + 142242 142324 83 Locate
ycf15 gene − 142579 142827 249 Locate
ycf2 gene − 142918 149730 6813 Locate
trnM-CAU gene + 149839 149913 75 Locate
rpl23 gene + 150078 150359 282 Locate
rpl2 gene + 150378 151869 1492 Locate
Status Available
Accession PP190943.1
Length 151,971 bp
GC content 37.8%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources