Clinopodium menthifolium subsp. ascendens chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · ON641271.1 · 11–85 bp · −
psbA · ON641271.1 · 388–1,446 bp · −
trnK-UUU · ON641271.1 · 1,667–4,257 bp · −
matK · ON641271.1 · 1,991–3,520 bp · −
rps16 · ON641271.1 · 4,801–5,938 bp · −
trnQ-UUG · ON641271.1 · 6,873–6,944 bp · −
trnS-GCU · ON641271.1 · 8,150–8,237 bp · −
atpA · ON641271.1 · 10,052–11,575 bp · −
atpF · ON641271.1 · 11,670–12,916 bp · −
atpH · ON641271.1 · 13,188–13,433 bp · −
atpI · ON641271.1 · 14,473–15,216 bp · −
rps2 · ON641271.1 · 15,442–16,152 bp · −
rpoC2 · ON641271.1 · 16,414–20,559 bp · −
rpoC1 · ON641271.1 · 20,732–23,543 bp · −
rpoB · ON641271.1 · 23,570–26,782 bp · −
psbM · ON641271.1 · 29,223–29,327 bp · −
trnD-GUC · ON641271.1 · 29,846–29,919 bp · −
trnY-GUA · ON641271.1 · 30,038–30,121 bp · −
trnE-UUC · ON641271.1 · 30,205–30,277 bp · −
trnS-UGA · ON641271.1 · 34,933–35,025 bp · −
trnfM-CAU · ON641271.1 · 36,059–36,132 bp · −
rps14 · ON641271.1 · 36,282–36,584 bp · −
psaB · ON641271.1 · 36,707–38,911 bp · −
psaA · ON641271.1 · 38,937–41,189 bp · −
pafI · ON641271.1 · 41,965–43,896 bp · −
rps4 · ON641271.1 · 45,055–45,660 bp · −
trnT-UGU · ON641271.1 · 46,049–46,121 bp · −
ndhJ · ON641271.1 · 48,363–48,839 bp · −
ndhK · ON641271.1 · 48,950–49,627 bp · −
ndhC · ON641271.1 · 49,679–50,041 bp · −
trnV-UAC · ON641271.1 · 50,989–51,632 bp · −
atpE · ON641271.1 · 52,081–52,482 bp · −
atpB · ON641271.1 · 52,479–53,969 bp · −
psbJ · ON641271.1 · 63,531–63,653 bp · −
psbL · ON641271.1 · 63,788–63,904 bp · −
psbF · ON641271.1 · 63,928–64,047 bp · −
psbE · ON641271.1 · 64,062–64,313 bp · −
trnW-CCA · ON641271.1 · 65,685–65,758 bp · −
trnP-UGG · ON641271.1 · 65,937–66,010 bp · −
rpl20 · ON641271.1 · 67,814–68,200 bp · −
rps12 · ON641271.1 · 69,000–69,113 bp · −
rps12 · ON641271.1 · 96,453–97,246 bp · −
clpP1 · ON641271.1 · 69,252–71,180 bp · −
pbf1 · ON641271.1 · 73,520–73,651 bp · −
rpoA · ON641271.1 · 77,044–78,051 bp · −
rps11 · ON641271.1 · 78,123–78,539 bp · −
rpl36 · ON641271.1 · 78,649–78,762 bp · −
infA · ON641271.1 · 78,858–79,091 bp · −
rps8 · ON641271.1 · 79,216–79,620 bp · −
rpl14 · ON641271.1 · 79,805–80,173 bp · −
rpl16 · ON641271.1 · 80,305–81,583 bp · −
rps3 · ON641271.1 · 81,728–82,390 bp · −
rpl22 · ON641271.1 · 82,375–82,842 bp · −
rps19 · ON641271.1 · 82,928–83,206 bp · −
rpl2 · ON641271.1 · 83,266–84,755 bp · −
rpl23 · ON641271.1 · 84,774–85,055 bp · −
trnI-CAU · ON641271.1 · 85,221–85,294 bp · −
trnL-CAA · ON641271.1 · 92,807–92,887 bp · −
ndhB · ON641271.1 · 93,459–95,666 bp · −
rps7 · ON641271.1 · 95,932–96,399 bp · −
trnN-GUU · ON641271.1 · 107,370–107,441 bp · −
ndhF · ON641271.1 · 108,795–111,026 bp · −
ndhD · ON641271.1 · 113,786–115,096 bp · −
psaC · ON641271.1 · 115,409–115,654 bp · −
ndhE · ON641271.1 · 115,895–116,200 bp · −
ndhG · ON641271.1 · 116,424–116,954 bp · −
ndhI · ON641271.1 · 117,333–117,839 bp · −
ndhA · ON641271.1 · 117,915–120,006 bp · −
ndhH · ON641271.1 · 120,008–121,189 bp · −
rps15 · ON641271.1 · 121,289–121,561 bp · −
ycf1 · ON641271.1 · 121,994–127,507 bp · −
trnR-ACG · ON641271.1 · 128,433–128,506 bp · −
rrn5 · ON641271.1 · 128,750–128,870 bp · −
rrn4.5 · ON641271.1 · 129,131–129,233 bp · −
rrn23 · ON641271.1 · 129,332–132,142 bp · −
trnA-UGC · ON641271.1 · 132,319–133,211 bp · −
trnI-GAU · ON641271.1 · 133,282–134,300 bp · −
rrn16 · ON641271.1 · 134,599–136,089 bp · −
trnV-GAC · ON641271.1 · 136,316–136,387 bp · −
ycf15 · ON641271.1 · 142,727–142,975 bp · −
ycf2 · ON641271.1 · 143,066–149,875 bp · −
psbK · ON641271.1 · 7,325–7,510 bp · +
psbI · ON641271.1 · 7,901–8,011 bp · +
trnG-UCC · ON641271.1 · 8,945–9,698 bp · +
trnR-UCU · ON641271.1 · 9,873–9,944 bp · +
trnC-GCA · ON641271.1 · 27,938–28,008 bp · +
petN · ON641271.1 · 28,169–28,258 bp · +
trnT-GGU · ON641271.1 · 30,835–30,906 bp · +
psbD · ON641271.1 · 32,258–33,319 bp · +
psbC · ON641271.1 · 33,303–34,688 bp · +
psbZ · ON641271.1 · 35,365–35,553 bp · +
trnG-GCC · ON641271.1 · 35,825–35,895 bp · +
trnS-GGA · ON641271.1 · 44,677–44,763 bp · +
trnL-UAA · ON641271.1 · 46,794–47,368 bp · +
trnF-GAA · ON641271.1 · 47,651–47,723 bp · +
trnM-CAU · ON641271.1 · 51,813–51,885 bp · +
rbcL · ON641271.1 · 54,759–56,192 bp · +
accD · ON641271.1 · 56,889–58,370 bp · +
psaI · ON641271.1 · 58,864–58,974 bp · +
pafII · ON641271.1 · 59,419–59,973 bp · +
cemA · ON641271.1 · 60,625–61,314 bp · +
petA · ON641271.1 · 61,528–62,490 bp · +
petL · ON641271.1 · 65,184–65,279 bp · +
petG · ON641271.1 · 65,451–65,564 bp · +
psaJ · ON641271.1 · 66,297–66,431 bp · +
rpl33 · ON641271.1 · 66,890–67,093 bp · +
rps18 · ON641271.1 · 67,271–67,576 bp · +
psbB · ON641271.1 · 71,632–73,158 bp · +
psbT · ON641271.1 · 73,350–73,451 bp · +
psbH · ON641271.1 · 73,757–73,978 bp · +
petB · ON641271.1 · 74,104–75,487 bp · +
petD · ON641271.1 · 75,675–76,861 bp · +
ycf2 · ON641271.1 · 85,403–92,212 bp · +
ycf15 · ON641271.1 · 92,303–92,551 bp · +
trnV-GAC · ON641271.1 · 98,891–98,962 bp · +
rrn16 · ON641271.1 · 99,189–100,679 bp · +
trnI-GAU · ON641271.1 · 100,978–101,996 bp · +
trnA-UGC · ON641271.1 · 102,067–102,959 bp · +
rrn23 · ON641271.1 · 103,136–105,946 bp · +
rrn4.5 · ON641271.1 · 106,045–106,147 bp · +
rrn5 · ON641271.1 · 106,408–106,528 bp · +
trnR-ACG · ON641271.1 · 106,772–106,845 bp · +
ycf1 · ON641271.1 · 107,771–108,829 bp · +
rpl32 · ON641271.1 · 111,500–111,670 bp · +
trnL-UAG · ON641271.1 · 112,400–112,479 bp · +
ccsA · ON641271.1 · 112,579–113,556 bp · +
trnN-GUU · ON641271.1 · 127,837–127,908 bp · +
rps7 · ON641271.1 · 138,879–139,346 bp · +
ndhB · ON641271.1 · 139,612–141,819 bp · +
trnL-CAA · ON641271.1 · 142,391–142,471 bp · +
trnI-CAU · ON641271.1 · 149,984–150,057 bp · +
rpl23 · ON641271.1 · 150,223–150,504 bp · +
rpl2 · ON641271.1 · 150,523–152,012 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Clinopodium menthifolium subsp. ascendens
ANNOTATED PLASTOME
ON641271.1
152,114 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38028 76057 114086 152114 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI pafII cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA pafI rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 pbf1 rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 388 1446 1059 Locate
trnK-UUU gene − 1667 4257 2591 Locate
matK gene − 1991 3520 1530 Locate
rps16 gene − 4801 5938 1138 Locate
trnQ-UUG gene − 6873 6944 72 Locate
psbK gene + 7325 7510 186 Locate
psbI gene + 7901 8011 111 Locate
trnS-GCU gene − 8150 8237 88 Locate
trnG-UCC gene + 8945 9698 754 Locate
trnR-UCU gene + 9873 9944 72 Locate
atpA gene − 10052 11575 1524 Locate
atpF gene − 11670 12916 1247 Locate
atpH gene − 13188 13433 246 Locate
atpI gene − 14473 15216 744 Locate
rps2 gene − 15442 16152 711 Locate
rpoC2 gene − 16414 20559 4146 Locate
rpoC1 gene − 20732 23543 2812 Locate
rpoB gene − 23570 26782 3213 Locate
trnC-GCA gene + 27938 28008 71 Locate
petN gene + 28169 28258 90 Locate
psbM gene − 29223 29327 105 Locate
trnD-GUC gene − 29846 29919 74 Locate
trnY-GUA gene − 30038 30121 84 Locate
trnE-UUC gene − 30205 30277 73 Locate
trnT-GGU gene + 30835 30906 72 Locate
psbD gene + 32258 33319 1062 Locate
psbC gene + 33303 34688 1386 Locate
trnS-UGA gene − 34933 35025 93 Locate
psbZ gene + 35365 35553 189 Locate
trnG-GCC gene + 35825 35895 71 Locate
trnfM-CAU gene − 36059 36132 74 Locate
rps14 gene − 36282 36584 303 Locate
psaB gene − 36707 38911 2205 Locate
psaA gene − 38937 41189 2253 Locate
pafI gene − 41965 43896 1932 Locate
trnS-GGA gene + 44677 44763 87 Locate
rps4 gene − 45055 45660 606 Locate
trnT-UGU gene − 46049 46121 73 Locate
trnL-UAA gene + 46794 47368 575 Locate
trnF-GAA gene + 47651 47723 73 Locate
ndhJ gene − 48363 48839 477 Locate
ndhK gene − 48950 49627 678 Locate
ndhC gene − 49679 50041 363 Locate
trnV-UAC gene − 50989 51632 644 Locate
trnM-CAU gene + 51813 51885 73 Locate
atpE gene − 52081 52482 402 Locate
atpB gene − 52479 53969 1491 Locate
rbcL gene + 54759 56192 1434 Locate
accD gene + 56889 58370 1482 Locate
psaI gene + 58864 58974 111 Locate
pafII gene + 59419 59973 555 Locate
cemA gene + 60625 61314 690 Locate
petA gene + 61528 62490 963 Locate
psbJ gene − 63531 63653 123 Locate
psbL gene − 63788 63904 117 Locate
psbF gene − 63928 64047 120 Locate
psbE gene − 64062 64313 252 Locate
petL gene + 65184 65279 96 Locate
petG gene + 65451 65564 114 Locate
trnW-CCA gene − 65685 65758 74 Locate
trnP-UGG gene − 65937 66010 74 Locate
psaJ gene + 66297 66431 135 Locate
rpl33 gene + 66890 67093 204 Locate
rps18 gene + 67271 67576 306 Locate
rpl20 gene − 67814 68200 387 Locate
rps12 gene − 69000 69113 114 Locate
clpP1 gene − 69252 71180 1929 Locate
psbB gene + 71632 73158 1527 Locate
psbT gene + 73350 73451 102 Locate
pbf1 gene − 73520 73651 132 Locate
psbH gene + 73757 73978 222 Locate
petB gene + 74104 75487 1384 Locate
petD gene + 75675 76861 1187 Locate
rpoA gene − 77044 78051 1008 Locate
rps11 gene − 78123 78539 417 Locate
rpl36 gene − 78649 78762 114 Locate
infA gene − 78858 79091 234 Locate
rps8 gene − 79216 79620 405 Locate
rpl14 gene − 79805 80173 369 Locate
rpl16 gene − 80305 81583 1279 Locate
rps3 gene − 81728 82390 663 Locate
rpl22 gene − 82375 82842 468 Locate
rps19 gene − 82928 83206 279 Locate
rpl2 gene − 83266 84755 1490 Locate
rpl23 gene − 84774 85055 282 Locate
trnI-CAU gene − 85221 85294 74 Locate
ycf2 gene + 85403 92212 6810 Locate
ycf15 gene + 92303 92551 249 Locate
trnL-CAA gene − 92807 92887 81 Locate
ndhB gene − 93459 95666 2208 Locate
rps7 gene − 95932 96399 468 Locate
rps12 gene − 96453 97246 794 Locate
trnV-GAC gene + 98891 98962 72 Locate
rrn16 gene + 99189 100679 1491 Locate
trnI-GAU gene + 100978 101996 1019 Locate
trnA-UGC gene + 102067 102959 893 Locate
rrn23 gene + 103136 105946 2811 Locate
rrn4.5 gene + 106045 106147 103 Locate
rrn5 gene + 106408 106528 121 Locate
trnR-ACG gene + 106772 106845 74 Locate
trnN-GUU gene − 107370 107441 72 Locate
ycf1 gene + 107771 108829 1059 Locate
ndhF gene − 108795 111026 2232 Locate
rpl32 gene + 111500 111670 171 Locate
trnL-UAG gene + 112400 112479 80 Locate
ccsA gene + 112579 113556 978 Locate
ndhD gene − 113786 115096 1311 Locate
psaC gene − 115409 115654 246 Locate
ndhE gene − 115895 116200 306 Locate
ndhG gene − 116424 116954 531 Locate
ndhI gene − 117333 117839 507 Locate
ndhA gene − 117915 120006 2092 Locate
ndhH gene − 120008 121189 1182 Locate
rps15 gene − 121289 121561 273 Locate
ycf1 gene − 121994 127507 5514 Locate
trnN-GUU gene + 127837 127908 72 Locate
trnR-ACG gene − 128433 128506 74 Locate
rrn5 gene − 128750 128870 121 Locate
rrn4.5 gene − 129131 129233 103 Locate
rrn23 gene − 129332 132142 2811 Locate
trnA-UGC gene − 132319 133211 893 Locate
trnI-GAU gene − 133282 134300 1019 Locate
rrn16 gene − 134599 136089 1491 Locate
trnV-GAC gene − 136316 136387 72 Locate
rps7 gene + 138879 139346 468 Locate
ndhB gene + 139612 141819 2208 Locate
trnL-CAA gene + 142391 142471 81 Locate
ycf15 gene − 142727 142975 249 Locate
ycf2 gene − 143066 149875 6810 Locate
trnI-CAU gene + 149984 150057 74 Locate
rpl23 gene + 150223 150504 282 Locate
rpl2 gene + 150523 152012 1490 Locate
Status Available
Accession ON641271.1
Length 152,114 bp
GC content 37.8%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 14 Other 16 Ribosomal Protein 25 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources