Clinopodium vulgare subsp. vulgare chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP190944.1 · 10–84 bp · −
psbA · PP190944.1 · 390–1,448 bp · −
trnK-UUU · PP190944.1 · 1,668–4,259 bp · −
matK · PP190944.1 · 1,993–3,522 bp · −
rps16 · PP190944.1 · 4,800–5,937 bp · −
trnQ-UUG · PP190944.1 · 6,873–6,944 bp · −
trnS-GCU · PP190944.1 · 8,147–8,234 bp · −
atpA · PP190944.1 · 10,061–11,584 bp · −
atpF · PP190944.1 · 11,677–12,930 bp · −
atpH · PP190944.1 · 13,197–13,442 bp · −
atpI · PP190944.1 · 14,458–15,201 bp · −
rps2 · PP190944.1 · 15,426–16,136 bp · −
rpoC2 · PP190944.1 · 16,360–20,547 bp · −
rpoC1 · PP190944.1 · 20,720–23,531 bp · −
rpoB · PP190944.1 · 23,558–26,770 bp · −
psbM · PP190944.1 · 29,193–29,297 bp · −
trnD-GUC · PP190944.1 · 29,814–29,890 bp · −
trnY-GUA · PP190944.1 · 30,007–30,092 bp · −
trnE-UUC · PP190944.1 · 30,159–30,231 bp · −
trnS-UGA · PP190944.1 · 34,890–34,982 bp · −
trnM-CAU · PP190944.1 · 36,013–36,087 bp · −
rps14 · PP190944.1 · 36,237–36,539 bp · −
psaB · PP190944.1 · 36,662–38,866 bp · −
psaA · PP190944.1 · 38,892–41,144 bp · −
ycf3 · PP190944.1 · 41,935–43,872 bp · −
rps4 · PP190944.1 · 45,074–45,679 bp · −
trnT-UGU · PP190944.1 · 46,054–46,128 bp · −
ndhJ · PP190944.1 · 48,375–48,851 bp · −
ndhK · PP190944.1 · 48,962–49,639 bp · −
ndhC · PP190944.1 · 49,691–50,053 bp · −
trnV-UAC · PP190944.1 · 51,001–51,645 bp · −
atpE · PP190944.1 · 52,088–52,489 bp · −
atpB · PP190944.1 · 52,486–53,976 bp · −
psbJ · PP190944.1 · 63,534–63,656 bp · −
psbL · PP190944.1 · 63,791–63,907 bp · −
psbF · PP190944.1 · 63,931–64,050 bp · −
psbE · PP190944.1 · 64,065–64,316 bp · −
trnW-CCA · PP190944.1 · 65,687–65,760 bp · −
trnP-UGG · PP190944.1 · 65,938–66,013 bp · −
rpl20 · PP190944.1 · 67,813–68,199 bp · −
rps12 · PP190944.1 · 69,006–69,119 bp · −
rps12 · PP190944.1 · 96,428–97,221 bp · −
clpP1 · PP190944.1 · 69,259–71,189 bp · −
psbN · PP190944.1 · 73,529–73,660 bp · −
rpoA · PP190944.1 · 77,042–78,049 bp · −
rps11 · PP190944.1 · 78,121–78,537 bp · −
rpl36 · PP190944.1 · 78,647–78,760 bp · −
infA · PP190944.1 · 78,856–79,089 bp · −
rps8 · PP190944.1 · 79,214–79,618 bp · −
rpl14 · PP190944.1 · 79,803–80,171 bp · −
rpl16 · PP190944.1 · 80,303–81,584 bp · −
rps3 · PP190944.1 · 81,729–82,391 bp · −
rpl22 · PP190944.1 · 82,376–82,843 bp · −
rps19 · PP190944.1 · 82,929–83,207 bp · −
rpl2 · PP190944.1 · 83,267–84,756 bp · −
rpl23 · PP190944.1 · 84,775–85,056 bp · −
trnM-CAU · PP190944.1 · 85,221–85,295 bp · −
trnL-CAA · PP190944.1 · 92,781–92,863 bp · −
ndhB · PP190944.1 · 93,434–95,641 bp · −
rps7 · PP190944.1 · 95,907–96,374 bp · −
trnN-GUU · PP190944.1 · 107,314–107,387 bp · −
ndhF · PP190944.1 · 108,761–110,971 bp · −
ndhD · PP190944.1 · 113,733–115,235 bp · −
psaC · PP190944.1 · 115,357–115,602 bp · −
ndhE · PP190944.1 · 115,843–116,148 bp · −
ndhG · PP190944.1 · 116,370–116,900 bp · −
ndhI · PP190944.1 · 117,280–117,786 bp · −
ndhA · PP190944.1 · 117,862–119,949 bp · −
ndhH · PP190944.1 · 119,951–121,186 bp · −
rps15 · PP190944.1 · 121,232–121,504 bp · −
ycf1 · PP190944.1 · 121,935–127,559 bp · −
trnR-ACG · PP190944.1 · 128,373–128,447 bp · −
rrn5 · PP190944.1 · 128,691–128,811 bp · −
rrn4.5 · PP190944.1 · 129,072–129,174 bp · −
rrn23 · PP190944.1 · 129,273–132,083 bp · −
trnA-UGC · PP190944.1 · 132,254–133,131 bp · −
trnI · PP190944.1 · 133,202–134,219 bp · −
rrn16 · PP190944.1 · 134,518–136,008 bp · −
trnV-GAC · PP190944.1 · 136,235–136,306 bp · −
ycf15 · PP190944.1 · 142,638–142,835 bp · −
ycf2 · PP190944.1 · 142,977–149,780 bp · −
psbK · PP190944.1 · 7,325–7,510 bp · +
psbI · PP190944.1 · 7,902–8,012 bp · +
trnG-UCC · PP190944.1 · 8,941–9,699 bp · +
trnR-UCU · PP190944.1 · 9,881–9,952 bp · +
trnC-GCA · PP190944.1 · 27,914–27,984 bp · +
petN · PP190944.1 · 28,145–28,234 bp · +
trnT-GGU · PP190944.1 · 30,791–30,864 bp · +
psbD · PP190944.1 · 32,215–33,276 bp · +
psbC · PP190944.1 · 33,224–34,645 bp · +
psbZ · PP190944.1 · 35,322–35,510 bp · +
trnG-GCC · PP190944.1 · 35,782–35,853 bp · +
trnS-GGA · PP190944.1 · 44,696–44,783 bp · +
trnL-UAA · PP190944.1 · 46,800–47,380 bp · +
trnF-GAA · PP190944.1 · 47,663–47,736 bp · +
trnM-CAU · PP190944.1 · 51,826–51,898 bp · +
rbcL · PP190944.1 · 54,745–56,199 bp · +
accD · PP190944.1 · 56,896–58,377 bp · +
psaI · PP190944.1 · 58,870–58,980 bp · +
ycf4 · PP190944.1 · 59,425–59,979 bp · +
cemA · PP190944.1 · 60,633–61,322 bp · +
petA · PP190944.1 · 61,536–62,498 bp · +
petL · PP190944.1 · 65,188–65,283 bp · +
petG · PP190944.1 · 65,453–65,566 bp · +
psaJ · PP190944.1 · 66,300–66,434 bp · +
rpl33 · PP190944.1 · 66,895–67,098 bp · +
rps18 · PP190944.1 · 67,269–67,574 bp · +
rps12 · PP190944.1 · 137,943–138,736 bp · +
psbB · PP190944.1 · 71,641–73,167 bp · +
psbT · PP190944.1 · 73,359–73,460 bp · +
psbH · PP190944.1 · 73,766–73,987 bp · +
petB · PP190944.1 · 74,113–75,483 bp · +
petD · PP190944.1 · 75,671–76,857 bp · +
ycf2 · PP190944.1 · 85,384–92,187 bp · +
ycf15 · PP190944.1 · 92,329–92,526 bp · +
trnV-GAC · PP190944.1 · 98,858–98,929 bp · +
rrn16 · PP190944.1 · 99,156–100,646 bp · +
trnI · PP190944.1 · 100,945–101,962 bp · +
trnA-UGC · PP190944.1 · 102,033–102,910 bp · +
rrn23 · PP190944.1 · 103,081–105,891 bp · +
rrn4.5 · PP190944.1 · 105,990–106,092 bp · +
rrn5 · PP190944.1 · 106,353–106,473 bp · +
trnR-ACG · PP190944.1 · 106,717–106,791 bp · +
ycf1 · PP190944.1 · 107,716–108,774 bp · +
rpl32 · PP190944.1 · 111,445–111,615 bp · +
trnL-UAG · PP190944.1 · 112,344–112,423 bp · +
ccsA · PP190944.1 · 112,524–113,501 bp · +
trnN-GUU · PP190944.1 · 127,777–127,850 bp · +
rps7 · PP190944.1 · 138,790–139,257 bp · +
ndhB · PP190944.1 · 139,523–141,730 bp · +
trnL-CAA · PP190944.1 · 142,301–142,383 bp · +
trnM-CAU · PP190944.1 · 149,869–149,943 bp · +
rpl23 · PP190944.1 · 150,108–150,389 bp · +
rpl2 · PP190944.1 · 150,408–151,897 bp · +
rps19 · PP190944.1 · 151,957–151,999 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Clinopodium vulgare subsp. vulgare
ANNOTATED PLASTOME
PP190944.1
151,999 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38000 76000 113999 151999 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 10 84 75 Locate
psbA gene − 390 1448 1059 Locate
trnK-UUU gene − 1668 4259 2592 Locate
matK gene − 1993 3522 1530 Locate
rps16 gene − 4800 5937 1138 Locate
trnQ-UUG gene − 6873 6944 72 Locate
psbK gene + 7325 7510 186 Locate
psbI gene + 7902 8012 111 Locate
trnS-GCU gene − 8147 8234 88 Locate
trnG-UCC gene + 8941 9699 759 Locate
trnR-UCU gene + 9881 9952 72 Locate
atpA gene − 10061 11584 1524 Locate
atpF gene − 11677 12930 1254 Locate
atpH gene − 13197 13442 246 Locate
atpI gene − 14458 15201 744 Locate
rps2 gene − 15426 16136 711 Locate
rpoC2 gene − 16360 20547 4188 Locate
rpoC1 gene − 20720 23531 2812 Locate
rpoB gene − 23558 26770 3213 Locate
trnC-GCA gene + 27914 27984 71 Locate
petN gene + 28145 28234 90 Locate
psbM gene − 29193 29297 105 Locate
trnD-GUC gene − 29814 29890 77 Locate
trnY-GUA gene − 30007 30092 86 Locate
trnE-UUC gene − 30159 30231 73 Locate
trnT-GGU gene + 30791 30864 74 Locate
psbD gene + 32215 33276 1062 Locate
psbC gene + 33224 34645 1422 Locate
trnS-UGA gene − 34890 34982 93 Locate
psbZ gene + 35322 35510 189 Locate
trnG-GCC gene + 35782 35853 72 Locate
trnM-CAU gene − 36013 36087 75 Locate
rps14 gene − 36237 36539 303 Locate
psaB gene − 36662 38866 2205 Locate
psaA gene − 38892 41144 2253 Locate
ycf3 gene − 41935 43872 1938 Locate
trnS-GGA gene + 44696 44783 88 Locate
rps4 gene − 45074 45679 606 Locate
trnT-UGU gene − 46054 46128 75 Locate
trnL-UAA gene + 46800 47380 581 Locate
trnF-GAA gene + 47663 47736 74 Locate
ndhJ gene − 48375 48851 477 Locate
ndhK gene − 48962 49639 678 Locate
ndhC gene − 49691 50053 363 Locate
trnV-UAC gene − 51001 51645 645 Locate
trnM-CAU gene + 51826 51898 73 Locate
atpE gene − 52088 52489 402 Locate
atpB gene − 52486 53976 1491 Locate
rbcL gene + 54745 56199 1455 Locate
accD gene + 56896 58377 1482 Locate
psaI gene + 58870 58980 111 Locate
ycf4 gene + 59425 59979 555 Locate
cemA gene + 60633 61322 690 Locate
petA gene + 61536 62498 963 Locate
psbJ gene − 63534 63656 123 Locate
psbL gene − 63791 63907 117 Locate
psbF gene − 63931 64050 120 Locate
psbE gene − 64065 64316 252 Locate
petL gene + 65188 65283 96 Locate
petG gene + 65453 65566 114 Locate
trnW-CCA gene − 65687 65760 74 Locate
trnP-UGG gene − 65938 66013 76 Locate
psaJ gene + 66300 66434 135 Locate
rpl33 gene + 66895 67098 204 Locate
rps18 gene + 67269 67574 306 Locate
rpl20 gene − 67813 68199 387 Locate
rps12 gene − 69006 69119 114 Locate
clpP1 gene − 69259 71189 1931 Locate
psbB gene + 71641 73167 1527 Locate
psbT gene + 73359 73460 102 Locate
psbN gene − 73529 73660 132 Locate
psbH gene + 73766 73987 222 Locate
petB gene + 74113 75483 1371 Locate
petD gene + 75671 76857 1187 Locate
rpoA gene − 77042 78049 1008 Locate
rps11 gene − 78121 78537 417 Locate
rpl36 gene − 78647 78760 114 Locate
infA gene − 78856 79089 234 Locate
rps8 gene − 79214 79618 405 Locate
rpl14 gene − 79803 80171 369 Locate
rpl16 gene − 80303 81584 1282 Locate
rps3 gene − 81729 82391 663 Locate
rpl22 gene − 82376 82843 468 Locate
rps19 gene − 82929 83207 279 Locate
rpl2 gene − 83267 84756 1490 Locate
rpl23 gene − 84775 85056 282 Locate
trnM-CAU gene − 85221 85295 75 Locate
ycf2 gene + 85384 92187 6804 Locate
ycf15 gene + 92329 92526 198 Locate
trnL-CAA gene − 92781 92863 83 Locate
ndhB gene − 93434 95641 2208 Locate
rps7 gene − 95907 96374 468 Locate
rps12 gene − 96428 97221 794 Locate
trnV-GAC gene + 98858 98929 72 Locate
rrn16 gene + 99156 100646 1491 Locate
trnI gene + 100945 101962 1018 Locate
trnA-UGC gene + 102033 102910 878 Locate
rrn23 gene + 103081 105891 2811 Locate
rrn4.5 gene + 105990 106092 103 Locate
rrn5 gene + 106353 106473 121 Locate
trnR-ACG gene + 106717 106791 75 Locate
trnN-GUU gene − 107314 107387 74 Locate
ycf1 gene + 107716 108774 1059 Locate
ndhF gene − 108761 110971 2211 Locate
rpl32 gene + 111445 111615 171 Locate
trnL-UAG gene + 112344 112423 80 Locate
ccsA gene + 112524 113501 978 Locate
ndhD gene − 113733 115235 1503 Locate
psaC gene − 115357 115602 246 Locate
ndhE gene − 115843 116148 306 Locate
ndhG gene − 116370 116900 531 Locate
ndhI gene − 117280 117786 507 Locate
ndhA gene − 117862 119949 2088 Locate
ndhH gene − 119951 121186 1236 Locate
rps15 gene − 121232 121504 273 Locate
ycf1 gene − 121935 127559 5625 Locate
trnN-GUU gene + 127777 127850 74 Locate
trnR-ACG gene − 128373 128447 75 Locate
rrn5 gene − 128691 128811 121 Locate
rrn4.5 gene − 129072 129174 103 Locate
rrn23 gene − 129273 132083 2811 Locate
trnA-UGC gene − 132254 133131 878 Locate
trnI gene − 133202 134219 1018 Locate
rrn16 gene − 134518 136008 1491 Locate
trnV-GAC gene − 136235 136306 72 Locate
rps12 gene + 137943 138736 794 Locate
rps7 gene + 138790 139257 468 Locate
ndhB gene + 139523 141730 2208 Locate
trnL-CAA gene + 142301 142383 83 Locate
ycf15 gene − 142638 142835 198 Locate
ycf2 gene − 142977 149780 6804 Locate
trnM-CAU gene + 149869 149943 75 Locate
rpl23 gene + 150108 150389 282 Locate
rpl2 gene + 150408 151897 1490 Locate
rps19 gene + 151957 151999 43 Locate
Status Available
Accession PP190944.1
Length 151,999 bp
GC content 37.9%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources