Colquhounia coccinea chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH(GUG) · NC_058329.1 · 2–76 bp · −
psbA · NC_058329.1 · 425–1,483 bp · −
trnK(UUU) · NC_058329.1 · 1,716–4,305 bp · −
matK · NC_058329.1 · 2,020–3,555 bp · −
rps16 · NC_058329.1 · 5,077–6,217 bp · −
trnQ(UUG) · NC_058329.1 · 7,376–7,447 bp · −
trnS(GCU) · NC_058329.1 · 8,581–8,668 bp · −
atpA · NC_058329.1 · 10,466–11,989 bp · −
atpF · NC_058329.1 · 12,078–13,302 bp · −
atpH · NC_058329.1 · 13,672–13,917 bp · −
atpI · NC_058329.1 · 14,934–15,677 bp · −
rps2 · NC_058329.1 · 15,908–16,618 bp · −
rpoC2 · NC_058329.1 · 16,839–21,029 bp · −
rpoC1 · NC_058329.1 · 21,184–24,043 bp · −
rpoB · NC_058329.1 · 24,049–27,261 bp · −
psbM · NC_058329.1 · 30,220–30,324 bp · −
trnD(GUC) · NC_058329.1 · 30,848–30,921 bp · −
trnY(GUA) · NC_058329.1 · 31,036–31,119 bp · −
trnE(UUC) · NC_058329.1 · 31,179–31,248 bp · −
trnT(GGU) · NC_058329.1 · 31,812–31,884 bp · −
trnS(UGA) · NC_058329.1 · 35,770–35,862 bp · −
trnfM(CAU) · NC_058329.1 · 36,820–36,893 bp · −
rps14 · NC_058329.1 · 37,043–37,345 bp · −
psaB · NC_058329.1 · 37,473–39,677 bp · −
psaA · NC_058329.1 · 39,703–41,955 bp · −
ycf3 · NC_058329.1 · 42,684–44,630 bp · −
rps4 · NC_058329.1 · 45,333–45,938 bp · −
trnT(UGU) · NC_058329.1 · 46,331–46,403 bp · −
ndhJ · NC_058329.1 · 48,707–49,183 bp · −
ndhK · NC_058329.1 · 49,284–49,961 bp · −
ndhC · NC_058329.1 · 50,015–50,377 bp · −
trnV(UAC) · NC_058329.1 · 51,322–51,974 bp · −
atpE · NC_058329.1 · 52,460–52,861 bp · −
atpB · NC_058329.1 · 52,858–54,360 bp · −
psbJ · NC_058329.1 · 64,026–64,148 bp · −
psbL · NC_058329.1 · 64,286–64,402 bp · −
psbF · NC_058329.1 · 64,426–64,545 bp · −
psbE · NC_058329.1 · 64,560–64,811 bp · −
trnW(CCA) · NC_058329.1 · 65,850–65,923 bp · −
trnP(UGG) · NC_058329.1 · 66,093–66,166 bp · −
rpl20 · NC_058329.1 · 67,941–68,327 bp · −
rps12 · NC_058329.1 · 69,088–69,201 bp · −
rps12 · NC_058329.1 · 96,436–97,229 bp · −
clpP · NC_058329.1 · 69,329–71,206 bp · −
psbN · NC_058329.1 · 73,527–73,658 bp · −
rpoA · NC_058329.1 · 77,058–78,071 bp · −
rps11 · NC_058329.1 · 78,143–78,559 bp · −
rpl36 · NC_058329.1 · 78,662–78,775 bp · −
infA · NC_058329.1 · 78,871–79,104 bp · −
rps8 · NC_058329.1 · 79,228–79,641 bp · −
rpl14 · NC_058329.1 · 79,816–80,184 bp · −
rpl16 · NC_058329.1 · 80,311–81,618 bp · −
rps3 · NC_058329.1 · 81,765–82,427 bp · −
rpl22 · NC_058329.1 · 82,412–82,876 bp · −
rps19 · NC_058329.1 · 82,936–83,214 bp · −
rpl2 · NC_058329.1 · 83,267–84,758 bp · −
rpl23 · NC_058329.1 · 84,777–85,058 bp · −
trnI(CAU) · NC_058329.1 · 85,224–85,297 bp · −
trnL(CAA) · NC_058329.1 · 92,804–92,884 bp · −
ndhB · NC_058329.1 · 93,429–95,640 bp · −
rps7 · NC_058329.1 · 95,915–96,382 bp · −
trnN(GUU) · NC_058329.1 · 107,335–107,406 bp · −
ndhF · NC_058329.1 · 108,796–111,018 bp · −
ndhD · NC_058329.1 · 113,570–115,090 bp · −
psaC · NC_058329.1 · 115,198–115,443 bp · −
ndhE · NC_058329.1 · 115,706–116,011 bp · −
ndhG · NC_058329.1 · 116,227–116,757 bp · −
ndhI · NC_058329.1 · 117,137–117,643 bp · −
ndhA · NC_058329.1 · 117,724–119,897 bp · −
ndhH · NC_058329.1 · 119,899–121,080 bp · −
rps15 · NC_058329.1 · 121,181–121,453 bp · −
ycf1 · NC_058329.1 · 121,855–127,413 bp · −
trnR(ACG) · NC_058329.1 · 128,384–128,456 bp · −
rrn5S · NC_058329.1 · 128,691–128,811 bp · −
rrn4.5S · NC_058329.1 · 129,067–129,169 bp · −
rrn23S · NC_058329.1 · 129,268–132,078 bp · −
trnA(UGC) · NC_058329.1 · 132,270–133,148 bp · −
trnI(GAU) · NC_058329.1 · 133,213–134,220 bp · −
rrn16S · NC_058329.1 · 134,510–136,000 bp · −
trnV(GAC) · NC_058329.1 · 136,228–136,299 bp · −
ycf15 · NC_058329.1 · 142,602–142,850 bp · −
ycf2 · NC_058329.1 · 142,893–149,759 bp · −
psbK · NC_058329.1 · 7,784–7,969 bp · +
psbI · NC_058329.1 · 8,347–8,457 bp · +
trnG(UCC) · NC_058329.1 · 9,360–10,121 bp · +
trnR(UCU) · NC_058329.1 · 10,295–10,369 bp · +
trnC(GCA) · NC_058329.1 · 28,429–28,504 bp · +
petN · NC_058329.1 · 29,341–29,430 bp · +
psbD · NC_058329.1 · 33,109–34,170 bp · +
psbC · NC_058329.1 · 34,118–35,539 bp · +
psbZ · NC_058329.1 · 36,188–36,376 bp · +
trnG(GCC) · NC_058329.1 · 36,600–36,670 bp · +
trnS(GGA) · NC_058329.1 · 44,957–45,043 bp · +
trnL(UAA) · NC_058329.1 · 47,097–47,670 bp · +
trnF(GAA) · NC_058329.1 · 47,970–48,042 bp · +
trnM(CAU) · NC_058329.1 · 52,163–52,235 bp · +
rbcL · NC_058329.1 · 55,164–56,609 bp · +
accD · NC_058329.1 · 57,299–58,765 bp · +
psaI · NC_058329.1 · 59,452–59,562 bp · +
ycf4 · NC_058329.1 · 59,996–60,550 bp · +
cemA · NC_058329.1 · 61,106–61,795 bp · +
petA · NC_058329.1 · 62,012–62,974 bp · +
petL · NC_058329.1 · 65,341–65,436 bp · +
petG · NC_058329.1 · 65,611–65,724 bp · +
psaJ · NC_058329.1 · 66,442–66,576 bp · +
rpl33 · NC_058329.1 · 67,047–67,247 bp · +
rps18 · NC_058329.1 · 67,418–67,723 bp · +
rps12 · NC_058329.1 · 137,916–138,709 bp · +
psbB · NC_058329.1 · 71,644–73,170 bp · +
psbT · NC_058329.1 · 73,359–73,466 bp · +
psbH · NC_058329.1 · 73,762–73,983 bp · +
petB · NC_058329.1 · 74,108–75,487 bp · +
petD · NC_058329.1 · 75,682–76,895 bp · +
ycf2 · NC_058329.1 · 85,386–92,252 bp · +
ycf15 · NC_058329.1 · 92,295–92,543 bp · +
trnV(GAC) · NC_058329.1 · 98,846–98,917 bp · +
rrn16S · NC_058329.1 · 99,145–100,635 bp · +
trnI(GAU) · NC_058329.1 · 100,925–101,932 bp · +
trnA(UGC) · NC_058329.1 · 101,997–102,875 bp · +
rrn23S · NC_058329.1 · 103,067–105,877 bp · +
rrn4.5S · NC_058329.1 · 105,976–106,078 bp · +
rrn5S · NC_058329.1 · 106,334–106,454 bp · +
trnR(ACG) · NC_058329.1 · 106,689–106,761 bp · +
ycf1 · NC_058329.1 · 107,732–108,850 bp · +
rpl32 · NC_058329.1 · 111,351–111,527 bp · +
trnL(UAG) · NC_058329.1 · 112,254–112,333 bp · +
ccsA · NC_058329.1 · 112,417–113,388 bp · +
trnN(GUU) · NC_058329.1 · 127,739–127,810 bp · +
rps7 · NC_058329.1 · 138,763–139,230 bp · +
ndhB · NC_058329.1 · 139,505–141,716 bp · +
trnL(CAA) · NC_058329.1 · 142,261–142,341 bp · +
trnI(CAU) · NC_058329.1 · 149,848–149,921 bp · +
rpl23 · NC_058329.1 · 150,087–150,368 bp · +
rpl2 · NC_058329.1 · 150,387–151,878 bp · +
rps19 · NC_058329.1 · 151,931–151,972 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Colquhounia coccinea
ANNOTATED PLASTOME
NC_058329.1
151,972 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37993 75986 113979 151972 bp
Forward strand 5′ → 3′
psbK psbI trnG(UCC) trnR(UCU) trnC(GCA) petN psbD psbC psbZ trnG(GCC) trnS(GGA) trnL(UAA) trnF(GAA) trnM(CAU) rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV(GAC) rrn16S trnI(GAU) trnA(UGC) rrn23S rrn4.5S rrn5S trnR(ACG) ycf1 rpl32 trnL(UAG) ccsA trnN(GUU) rps12 rps7 ndhB trnL(CAA) trnI(CAU) rpl23 rpl2 rps19
trnH(GUG) psbA trnK(UUU) matK rps16 trnQ(UUG) trnS(GCU) atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD(GUC) trnY(GUA) trnE(UUC) trnT(GGU) trnS(UGA) trnfM(CAU) rps14 psaB psaA ycf3 rps4 trnT(UGU) ndhJ ndhK ndhC trnV(UAC) atpE atpB psbJ psbL psbF psbE trnW(CCA) trnP(UGG) rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI(CAU) trnL(CAA) ndhB rps7 rps12 trnN(GUU) ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR(ACG) rrn5S rrn4.5S rrn23S trnA(UGC) trnI(GAU) rrn16S trnV(GAC) ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH(GUG) gene − 2 76 75 Locate
psbA gene − 425 1483 1059 Locate
trnK(UUU) gene − 1716 4305 2590 Locate
matK gene − 2020 3555 1536 Locate
rps16 gene − 5077 6217 1141 Locate
trnQ(UUG) gene − 7376 7447 72 Locate
psbK gene + 7784 7969 186 Locate
psbI gene + 8347 8457 111 Locate
trnS(GCU) gene − 8581 8668 88 Locate
trnG(UCC) gene + 9360 10121 762 Locate
trnR(UCU) gene + 10295 10369 75 Locate
atpA gene − 10466 11989 1524 Locate
atpF gene − 12078 13302 1225 Locate
atpH gene − 13672 13917 246 Locate
atpI gene − 14934 15677 744 Locate
rps2 gene − 15908 16618 711 Locate
rpoC2 gene − 16839 21029 4191 Locate
rpoC1 gene − 21184 24043 2860 Locate
rpoB gene − 24049 27261 3213 Locate
trnC(GCA) gene + 28429 28504 76 Locate
petN gene + 29341 29430 90 Locate
psbM gene − 30220 30324 105 Locate
trnD(GUC) gene − 30848 30921 74 Locate
trnY(GUA) gene − 31036 31119 84 Locate
trnE(UUC) gene − 31179 31248 70 Locate
trnT(GGU) gene − 31812 31884 73 Locate
psbD gene + 33109 34170 1062 Locate
psbC gene + 34118 35539 1422 Locate
trnS(UGA) gene − 35770 35862 93 Locate
psbZ gene + 36188 36376 189 Locate
trnG(GCC) gene + 36600 36670 71 Locate
trnfM(CAU) gene − 36820 36893 74 Locate
rps14 gene − 37043 37345 303 Locate
psaB gene − 37473 39677 2205 Locate
psaA gene − 39703 41955 2253 Locate
ycf3 gene − 42684 44630 1947 Locate
trnS(GGA) gene + 44957 45043 87 Locate
rps4 gene − 45333 45938 606 Locate
trnT(UGU) gene − 46331 46403 73 Locate
trnL(UAA) gene + 47097 47670 574 Locate
trnF(GAA) gene + 47970 48042 73 Locate
ndhJ gene − 48707 49183 477 Locate
ndhK gene − 49284 49961 678 Locate
ndhC gene − 50015 50377 363 Locate
trnV(UAC) gene − 51322 51974 653 Locate
trnM(CAU) gene + 52163 52235 73 Locate
atpE gene − 52460 52861 402 Locate
atpB gene − 52858 54360 1503 Locate
rbcL gene + 55164 56609 1446 Locate
accD gene + 57299 58765 1467 Locate
psaI gene + 59452 59562 111 Locate
ycf4 gene + 59996 60550 555 Locate
cemA gene + 61106 61795 690 Locate
petA gene + 62012 62974 963 Locate
psbJ gene − 64026 64148 123 Locate
psbL gene − 64286 64402 117 Locate
psbF gene − 64426 64545 120 Locate
psbE gene − 64560 64811 252 Locate
petL gene + 65341 65436 96 Locate
petG gene + 65611 65724 114 Locate
trnW(CCA) gene − 65850 65923 74 Locate
trnP(UGG) gene − 66093 66166 74 Locate
psaJ gene + 66442 66576 135 Locate
rpl33 gene + 67047 67247 201 Locate
rps18 gene + 67418 67723 306 Locate
rpl20 gene − 67941 68327 387 Locate
rps12 gene − 69088 69201 114 Locate
clpP gene − 69329 71206 1878 Locate
psbB gene + 71644 73170 1527 Locate
psbT gene + 73359 73466 108 Locate
psbN gene − 73527 73658 132 Locate
psbH gene + 73762 73983 222 Locate
petB gene + 74108 75487 1380 Locate
petD gene + 75682 76895 1214 Locate
rpoA gene − 77058 78071 1014 Locate
rps11 gene − 78143 78559 417 Locate
rpl36 gene − 78662 78775 114 Locate
infA gene − 78871 79104 234 Locate
rps8 gene − 79228 79641 414 Locate
rpl14 gene − 79816 80184 369 Locate
rpl16 gene − 80311 81618 1308 Locate
rps3 gene − 81765 82427 663 Locate
rpl22 gene − 82412 82876 465 Locate
rps19 gene − 82936 83214 279 Locate
rpl2 gene − 83267 84758 1492 Locate
rpl23 gene − 84777 85058 282 Locate
trnI(CAU) gene − 85224 85297 74 Locate
ycf2 gene + 85386 92252 6867 Locate
ycf15 gene + 92295 92543 249 Locate
trnL(CAA) gene − 92804 92884 81 Locate
ndhB gene − 93429 95640 2212 Locate
rps7 gene − 95915 96382 468 Locate
rps12 gene − 96436 97229 794 Locate
trnV(GAC) gene + 98846 98917 72 Locate
rrn16S gene + 99145 100635 1491 Locate
trnI(GAU) gene + 100925 101932 1008 Locate
trnA(UGC) gene + 101997 102875 879 Locate
rrn23S gene + 103067 105877 2811 Locate
rrn4.5S gene + 105976 106078 103 Locate
rrn5S gene + 106334 106454 121 Locate
trnR(ACG) gene + 106689 106761 73 Locate
trnN(GUU) gene − 107335 107406 72 Locate
ycf1 gene + 107732 108850 1119 Locate
ndhF gene − 108796 111018 2223 Locate
rpl32 gene + 111351 111527 177 Locate
trnL(UAG) gene + 112254 112333 80 Locate
ccsA gene + 112417 113388 972 Locate
ndhD gene − 113570 115090 1521 Locate
psaC gene − 115198 115443 246 Locate
ndhE gene − 115706 116011 306 Locate
ndhG gene − 116227 116757 531 Locate
ndhI gene − 117137 117643 507 Locate
ndhA gene − 117724 119897 2174 Locate
ndhH gene − 119899 121080 1182 Locate
rps15 gene − 121181 121453 273 Locate
ycf1 gene − 121855 127413 5559 Locate
trnN(GUU) gene + 127739 127810 72 Locate
trnR(ACG) gene − 128384 128456 73 Locate
rrn5S gene − 128691 128811 121 Locate
rrn4.5S gene − 129067 129169 103 Locate
rrn23S gene − 129268 132078 2811 Locate
trnA(UGC) gene − 132270 133148 879 Locate
trnI(GAU) gene − 133213 134220 1008 Locate
rrn16S gene − 134510 136000 1491 Locate
trnV(GAC) gene − 136228 136299 72 Locate
rps12 gene + 137916 138709 794 Locate
rps7 gene + 138763 139230 468 Locate
ndhB gene + 139505 141716 2212 Locate
trnL(CAA) gene + 142261 142341 81 Locate
ycf15 gene − 142602 142850 249 Locate
ycf2 gene − 142893 149759 6867 Locate
trnI(CAU) gene + 149848 149921 74 Locate
rpl23 gene + 150087 150368 282 Locate
rpl2 gene + 150387 151878 1492 Locate
rps19 gene + 151931 151972 42 Locate
Status Available
Accession NC_058329.1
Length 151,972 bp
GC content 38.4%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources