Colquhounia compta chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ634728.1 · 2–76 bp · −
psbA · PQ634728.1 · 425–1,483 bp · −
trnK-UUU · PQ634728.1 · 1,716–4,305 bp · −
matK · PQ634728.1 · 2,020–3,555 bp · −
rps16 · PQ634728.1 · 5,077–6,217 bp · −
trnQ-UUG · PQ634728.1 · 7,376–7,447 bp · −
trnS-GCU · PQ634728.1 · 8,581–8,668 bp · −
atpA · PQ634728.1 · 10,466–11,989 bp · −
atpF · PQ634728.1 · 12,078–13,302 bp · −
atpH · PQ634728.1 · 13,672–13,917 bp · −
atpI · PQ634728.1 · 14,934–15,677 bp · −
rps2 · PQ634728.1 · 15,908–16,618 bp · −
rpoC2 · PQ634728.1 · 16,839–21,029 bp · −
rpoC1 · PQ634728.1 · 21,184–24,022 bp · −
rpoB · PQ634728.1 · 24,049–27,261 bp · −
psbM · PQ634728.1 · 30,220–30,324 bp · −
trnD-GUC · PQ634728.1 · 30,848–30,921 bp · −
trnY-GUA · PQ634728.1 · 31,036–31,119 bp · −
trnE-UUC · PQ634728.1 · 31,179–31,248 bp · −
trnT-GGU · PQ634728.1 · 31,812–31,884 bp · −
trnS-UGA · PQ634728.1 · 35,770–35,862 bp · −
trnfM-CAU · PQ634728.1 · 36,820–36,893 bp · −
rps14 · PQ634728.1 · 37,043–37,345 bp · −
psaB · PQ634728.1 · 37,473–39,677 bp · −
psaA · PQ634728.1 · 39,703–41,955 bp · −
ycf3 · PQ634728.1 · 42,684–44,630 bp · −
rps4 · PQ634728.1 · 45,333–45,938 bp · −
trnT-UGU · PQ634728.1 · 46,331–46,403 bp · −
ndhJ · PQ634728.1 · 48,694–49,170 bp · −
ndhK · PQ634728.1 · 49,271–49,948 bp · −
ndhC · PQ634728.1 · 50,002–50,364 bp · −
trnV-UAC · PQ634728.1 · 51,309–51,961 bp · −
atpE · PQ634728.1 · 52,447–52,848 bp · −
atpB · PQ634728.1 · 52,845–54,341 bp · −
psbJ · PQ634728.1 · 64,013–64,135 bp · −
psbL · PQ634728.1 · 64,273–64,389 bp · −
psbF · PQ634728.1 · 64,413–64,532 bp · −
psbE · PQ634728.1 · 64,547–64,798 bp · −
trnW-CCA · PQ634728.1 · 65,837–65,910 bp · −
trnP-UGG · PQ634728.1 · 66,080–66,153 bp · −
rpl20 · PQ634728.1 · 67,928–68,314 bp · −
rps12 · PQ634728.1 · 69,075–69,188 bp · −
rps12 · PQ634728.1 · 96,429–97,222 bp · −
clpP · PQ634728.1 · 69,316–71,193 bp · −
psbN · PQ634728.1 · 73,520–73,651 bp · −
rpoA · PQ634728.1 · 77,051–78,064 bp · −
rps11 · PQ634728.1 · 78,136–78,552 bp · −
rpl36 · PQ634728.1 · 78,655–78,768 bp · −
infA · PQ634728.1 · 78,864–79,097 bp · −
rps8 · PQ634728.1 · 79,221–79,634 bp · −
rpl14 · PQ634728.1 · 79,809–80,177 bp · −
rpl16 · PQ634728.1 · 80,304–81,611 bp · −
rps3 · PQ634728.1 · 81,758–82,420 bp · −
rpl22 · PQ634728.1 · 82,405–82,869 bp · −
rps19 · PQ634728.1 · 82,929–83,207 bp · −
rpl2 · PQ634728.1 · 83,260–84,751 bp · −
rpl23 · PQ634728.1 · 84,770–85,051 bp · −
trnI-CAU · PQ634728.1 · 85,217–85,290 bp · −
trnL-CAA · PQ634728.1 · 92,797–92,877 bp · −
ndhB · PQ634728.1 · 93,422–95,633 bp · −
rps7 · PQ634728.1 · 95,908–96,375 bp · −
trnN-GUU · PQ634728.1 · 107,328–107,399 bp · −
ndhF · PQ634728.1 · 108,789–111,011 bp · −
ndhD · PQ634728.1 · 113,563–115,083 bp · −
psaC · PQ634728.1 · 115,191–115,436 bp · −
ndhE · PQ634728.1 · 115,699–116,004 bp · −
ndhG · PQ634728.1 · 116,220–116,750 bp · −
ndhI · PQ634728.1 · 117,130–117,636 bp · −
ndhA · PQ634728.1 · 117,717–119,890 bp · −
ndhH · PQ634728.1 · 119,892–121,073 bp · −
rps15 · PQ634728.1 · 121,174–121,446 bp · −
ycf1 · PQ634728.1 · 121,848–127,406 bp · −
trnR-ACG · PQ634728.1 · 128,377–128,449 bp · −
rrn5S · PQ634728.1 · 128,684–128,804 bp · −
rrn4.5S · PQ634728.1 · 129,060–129,162 bp · −
rrn23S · PQ634728.1 · 129,261–132,071 bp · −
trnA-UGC · PQ634728.1 · 132,263–133,141 bp · −
trnI-GAU · PQ634728.1 · 133,206–134,213 bp · −
rrn16S · PQ634728.1 · 134,503–135,993 bp · −
trnV-GAC · PQ634728.1 · 136,221–136,292 bp · −
ycf15 · PQ634728.1 · 142,595–142,792 bp · −
ycf2 · PQ634728.1 · 142,886–149,752 bp · −
psbK · PQ634728.1 · 7,784–7,969 bp · +
psbI · PQ634728.1 · 8,347–8,457 bp · +
trnG-UCC · PQ634728.1 · 9,360–10,121 bp · +
trnR-UCU · PQ634728.1 · 10,295–10,369 bp · +
trnC-GCA · PQ634728.1 · 28,429–28,504 bp · +
petN · PQ634728.1 · 29,341–29,430 bp · +
psbD · PQ634728.1 · 33,109–34,170 bp · +
psbC · PQ634728.1 · 34,118–35,539 bp · +
psbZ · PQ634728.1 · 36,188–36,376 bp · +
trnG-GCC · PQ634728.1 · 36,600–36,670 bp · +
trnS-GGA · PQ634728.1 · 44,957–45,043 bp · +
trnL-UAA · PQ634728.1 · 47,084–47,657 bp · +
trnF-GAA · PQ634728.1 · 47,957–48,029 bp · +
trnM-CAU · PQ634728.1 · 52,150–52,222 bp · +
rbcL · PQ634728.1 · 55,151–56,596 bp · +
accD · PQ634728.1 · 57,286–58,752 bp · +
psaI · PQ634728.1 · 59,439–59,549 bp · +
ycf4 · PQ634728.1 · 59,983–60,537 bp · +
cemA · PQ634728.1 · 61,093–61,782 bp · +
petA · PQ634728.1 · 61,999–62,961 bp · +
petL · PQ634728.1 · 65,328–65,423 bp · +
petG · PQ634728.1 · 65,598–65,711 bp · +
psaJ · PQ634728.1 · 66,429–66,563 bp · +
rpl33 · PQ634728.1 · 67,034–67,234 bp · +
rps18 · PQ634728.1 · 67,405–67,710 bp · +
rps12 · PQ634728.1 · 137,909–138,702 bp · +
psbB · PQ634728.1 · 71,631–73,157 bp · +
psbT · PQ634728.1 · 73,352–73,459 bp · +
psbH · PQ634728.1 · 73,755–73,976 bp · +
petB · PQ634728.1 · 74,101–75,480 bp · +
petD · PQ634728.1 · 75,675–76,888 bp · +
ycf2 · PQ634728.1 · 85,379–92,245 bp · +
ycf15 · PQ634728.1 · 92,339–92,536 bp · +
trnV-GAC · PQ634728.1 · 98,839–98,910 bp · +
rrn16S · PQ634728.1 · 99,138–100,628 bp · +
trnI-GAU · PQ634728.1 · 100,918–101,925 bp · +
trnA-UGC · PQ634728.1 · 101,990–102,868 bp · +
rrn23S · PQ634728.1 · 103,060–105,870 bp · +
rrn4.5S · PQ634728.1 · 105,969–106,071 bp · +
rrn5S · PQ634728.1 · 106,327–106,447 bp · +
trnR-ACG · PQ634728.1 · 106,682–106,754 bp · +
ycf1 · PQ634728.1 · 107,725–108,843 bp · +
rpl32 · PQ634728.1 · 111,344–111,520 bp · +
trnL-UAG · PQ634728.1 · 112,247–112,326 bp · +
ccsA · PQ634728.1 · 112,410–113,381 bp · +
trnN-GUU · PQ634728.1 · 127,732–127,803 bp · +
rps7 · PQ634728.1 · 138,756–139,223 bp · +
ndhB · PQ634728.1 · 139,498–141,709 bp · +
trnL-CAA · PQ634728.1 · 142,254–142,334 bp · +
trnI-CAU · PQ634728.1 · 149,841–149,914 bp · +
rpl23 · PQ634728.1 · 150,080–150,361 bp · +
rpl2 · PQ634728.1 · 150,380–151,871 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Colquhounia compta
ANNOTATED PLASTOME
PQ634728.1
151,965 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37991 75982 113974 151965 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16S trnI-GAU trnA-UGC rrn23S rrn4.5S rrn5S trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnT-GGU trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5S rrn4.5S rrn23S trnA-UGC trnI-GAU rrn16S trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 425 1483 1059 Locate
trnK-UUU gene − 1716 4305 2590 Locate
matK gene − 2020 3555 1536 Locate
rps16 gene − 5077 6217 1141 Locate
trnQ-UUG gene − 7376 7447 72 Locate
psbK gene + 7784 7969 186 Locate
psbI gene + 8347 8457 111 Locate
trnS-GCU gene − 8581 8668 88 Locate
trnG-UCC gene + 9360 10121 762 Locate
trnR-UCU gene + 10295 10369 75 Locate
atpA gene − 10466 11989 1524 Locate
atpF gene − 12078 13302 1225 Locate
atpH gene − 13672 13917 246 Locate
atpI gene − 14934 15677 744 Locate
rps2 gene − 15908 16618 711 Locate
rpoC2 gene − 16839 21029 4191 Locate
rpoC1 gene − 21184 24022 2839 Locate
rpoB gene − 24049 27261 3213 Locate
trnC-GCA gene + 28429 28504 76 Locate
petN gene + 29341 29430 90 Locate
psbM gene − 30220 30324 105 Locate
trnD-GUC gene − 30848 30921 74 Locate
trnY-GUA gene − 31036 31119 84 Locate
trnE-UUC gene − 31179 31248 70 Locate
trnT-GGU gene − 31812 31884 73 Locate
psbD gene + 33109 34170 1062 Locate
psbC gene + 34118 35539 1422 Locate
trnS-UGA gene − 35770 35862 93 Locate
psbZ gene + 36188 36376 189 Locate
trnG-GCC gene + 36600 36670 71 Locate
trnfM-CAU gene − 36820 36893 74 Locate
rps14 gene − 37043 37345 303 Locate
psaB gene − 37473 39677 2205 Locate
psaA gene − 39703 41955 2253 Locate
ycf3 gene − 42684 44630 1947 Locate
trnS-GGA gene + 44957 45043 87 Locate
rps4 gene − 45333 45938 606 Locate
trnT-UGU gene − 46331 46403 73 Locate
trnL-UAA gene + 47084 47657 574 Locate
trnF-GAA gene + 47957 48029 73 Locate
ndhJ gene − 48694 49170 477 Locate
ndhK gene − 49271 49948 678 Locate
ndhC gene − 50002 50364 363 Locate
trnV-UAC gene − 51309 51961 653 Locate
trnM-CAU gene + 52150 52222 73 Locate
atpE gene − 52447 52848 402 Locate
atpB gene − 52845 54341 1497 Locate
rbcL gene + 55151 56596 1446 Locate
accD gene + 57286 58752 1467 Locate
psaI gene + 59439 59549 111 Locate
ycf4 gene + 59983 60537 555 Locate
cemA gene + 61093 61782 690 Locate
petA gene + 61999 62961 963 Locate
psbJ gene − 64013 64135 123 Locate
psbL gene − 64273 64389 117 Locate
psbF gene − 64413 64532 120 Locate
psbE gene − 64547 64798 252 Locate
petL gene + 65328 65423 96 Locate
petG gene + 65598 65711 114 Locate
trnW-CCA gene − 65837 65910 74 Locate
trnP-UGG gene − 66080 66153 74 Locate
psaJ gene + 66429 66563 135 Locate
rpl33 gene + 67034 67234 201 Locate
rps18 gene + 67405 67710 306 Locate
rpl20 gene − 67928 68314 387 Locate
rps12 gene − 69075 69188 114 Locate
clpP gene − 69316 71193 1878 Locate
psbB gene + 71631 73157 1527 Locate
psbT gene + 73352 73459 108 Locate
psbN gene − 73520 73651 132 Locate
psbH gene + 73755 73976 222 Locate
petB gene + 74101 75480 1380 Locate
petD gene + 75675 76888 1214 Locate
rpoA gene − 77051 78064 1014 Locate
rps11 gene − 78136 78552 417 Locate
rpl36 gene − 78655 78768 114 Locate
infA gene − 78864 79097 234 Locate
rps8 gene − 79221 79634 414 Locate
rpl14 gene − 79809 80177 369 Locate
rpl16 gene − 80304 81611 1308 Locate
rps3 gene − 81758 82420 663 Locate
rpl22 gene − 82405 82869 465 Locate
rps19 gene − 82929 83207 279 Locate
rpl2 gene − 83260 84751 1492 Locate
rpl23 gene − 84770 85051 282 Locate
trnI-CAU gene − 85217 85290 74 Locate
ycf2 gene + 85379 92245 6867 Locate
ycf15 gene + 92339 92536 198 Locate
trnL-CAA gene − 92797 92877 81 Locate
ndhB gene − 93422 95633 2212 Locate
rps7 gene − 95908 96375 468 Locate
rps12 gene − 96429 97222 794 Locate
trnV-GAC gene + 98839 98910 72 Locate
rrn16S gene + 99138 100628 1491 Locate
trnI-GAU gene + 100918 101925 1008 Locate
trnA-UGC gene + 101990 102868 879 Locate
rrn23S gene + 103060 105870 2811 Locate
rrn4.5S gene + 105969 106071 103 Locate
rrn5S gene + 106327 106447 121 Locate
trnR-ACG gene + 106682 106754 73 Locate
trnN-GUU gene − 107328 107399 72 Locate
ycf1 gene + 107725 108843 1119 Locate
ndhF gene − 108789 111011 2223 Locate
rpl32 gene + 111344 111520 177 Locate
trnL-UAG gene + 112247 112326 80 Locate
ccsA gene + 112410 113381 972 Locate
ndhD gene − 113563 115083 1521 Locate
psaC gene − 115191 115436 246 Locate
ndhE gene − 115699 116004 306 Locate
ndhG gene − 116220 116750 531 Locate
ndhI gene − 117130 117636 507 Locate
ndhA gene − 117717 119890 2174 Locate
ndhH gene − 119892 121073 1182 Locate
rps15 gene − 121174 121446 273 Locate
ycf1 gene − 121848 127406 5559 Locate
trnN-GUU gene + 127732 127803 72 Locate
trnR-ACG gene − 128377 128449 73 Locate
rrn5S gene − 128684 128804 121 Locate
rrn4.5S gene − 129060 129162 103 Locate
rrn23S gene − 129261 132071 2811 Locate
trnA-UGC gene − 132263 133141 879 Locate
trnI-GAU gene − 133206 134213 1008 Locate
rrn16S gene − 134503 135993 1491 Locate
trnV-GAC gene − 136221 136292 72 Locate
rps12 gene + 137909 138702 794 Locate
rps7 gene + 138756 139223 468 Locate
ndhB gene + 139498 141709 2212 Locate
trnL-CAA gene + 142254 142334 81 Locate
ycf15 gene − 142595 142792 198 Locate
ycf2 gene − 142886 149752 6867 Locate
trnI-CAU gene + 149841 149914 74 Locate
rpl23 gene + 150080 150361 282 Locate
rpl2 gene + 150380 151871 1492 Locate
Status Available
Accession PQ634728.1
Length 151,965 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources