Colquhounia seguinii chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH(GUG) · NC_058330.1 · 2–76 bp · −
psbA · NC_058330.1 · 506–1,564 bp · −
trnK(UUU) · NC_058330.1 · 1,797–4,387 bp · −
matK · NC_058330.1 · 2,101–3,636 bp · −
rps16 · NC_058330.1 · 5,314–6,453 bp · −
trnQ(UUG) · NC_058330.1 · 7,626–7,697 bp · −
trnS(GCU) · NC_058330.1 · 8,832–8,919 bp · −
atpA · NC_058330.1 · 10,713–12,236 bp · −
atpF · NC_058330.1 · 12,325–13,539 bp · −
atpH · NC_058330.1 · 13,909–14,154 bp · −
atpI · NC_058330.1 · 15,161–15,904 bp · −
rps2 · NC_058330.1 · 16,125–16,835 bp · −
rpoC2 · NC_058330.1 · 17,056–21,246 bp · −
rpoC1 · NC_058330.1 · 21,401–24,265 bp · −
rpoB · NC_058330.1 · 24,271–27,483 bp · −
psbM · NC_058330.1 · 30,431–30,535 bp · −
trnD(GUC) · NC_058330.1 · 31,059–31,132 bp · −
trnY(GUA) · NC_058330.1 · 31,247–31,330 bp · −
trnE(UUC) · NC_058330.1 · 31,390–31,459 bp · −
trnT(GGU) · NC_058330.1 · 32,027–32,099 bp · −
trnS(UGA) · NC_058330.1 · 35,998–36,090 bp · −
trnfM(CAU) · NC_058330.1 · 37,048–37,121 bp · −
rps14 · NC_058330.1 · 37,271–37,573 bp · −
psaB · NC_058330.1 · 37,701–39,905 bp · −
psaA · NC_058330.1 · 39,931–42,183 bp · −
ycf3 · NC_058330.1 · 42,905–44,849 bp · −
rps4 · NC_058330.1 · 45,551–46,156 bp · −
trnT(UGU) · NC_058330.1 · 46,547–46,619 bp · −
ndhJ · NC_058330.1 · 48,899–49,375 bp · −
ndhK · NC_058330.1 · 49,476–50,153 bp · −
ndhC · NC_058330.1 · 50,207–50,569 bp · −
trnV(UAC) · NC_058330.1 · 51,523–52,175 bp · −
atpE · NC_058330.1 · 52,662–53,063 bp · −
atpB · NC_058330.1 · 53,060–54,562 bp · −
psbJ · NC_058330.1 · 64,229–64,351 bp · −
psbL · NC_058330.1 · 64,489–64,605 bp · −
psbF · NC_058330.1 · 64,629–64,748 bp · −
psbE · NC_058330.1 · 64,763–65,014 bp · −
trnW(CCA) · NC_058330.1 · 66,457–66,530 bp · −
trnP(UGG) · NC_058330.1 · 66,701–66,774 bp · −
rpl20 · NC_058330.1 · 68,541–68,927 bp · −
rps12 · NC_058330.1 · 69,686–69,799 bp · −
rps12 · NC_058330.1 · 97,016–97,809 bp · −
clpP · NC_058330.1 · 69,926–71,804 bp · −
psbN · NC_058330.1 · 74,137–74,268 bp · −
rpoA · NC_058330.1 · 77,669–78,682 bp · −
rps11 · NC_058330.1 · 78,754–79,170 bp · −
rpl36 · NC_058330.1 · 79,273–79,386 bp · −
infA · NC_058330.1 · 79,482–79,715 bp · −
rps8 · NC_058330.1 · 79,838–80,251 bp · −
rpl14 · NC_058330.1 · 80,425–80,793 bp · −
rpl16 · NC_058330.1 · 80,920–82,198 bp · −
rps3 · NC_058330.1 · 82,345–83,007 bp · −
rpl22 · NC_058330.1 · 82,992–83,456 bp · −
rps19 · NC_058330.1 · 83,516–83,794 bp · −
rpl2 · NC_058330.1 · 83,847–85,338 bp · −
rpl23 · NC_058330.1 · 85,357–85,638 bp · −
trnI(CAU) · NC_058330.1 · 85,804–85,877 bp · −
trnL(CAA) · NC_058330.1 · 93,384–93,464 bp · −
ndhB · NC_058330.1 · 94,009–96,220 bp · −
rps7 · NC_058330.1 · 96,495–96,962 bp · −
trnN(GUU) · NC_058330.1 · 107,916–107,987 bp · −
ndhF · NC_058330.1 · 109,372–111,594 bp · −
ndhD · NC_058330.1 · 114,289–115,818 bp · −
psaC · NC_058330.1 · 115,911–116,156 bp · −
ndhE · NC_058330.1 · 116,419–116,724 bp · −
ndhG · NC_058330.1 · 116,940–117,470 bp · −
ndhI · NC_058330.1 · 117,850–118,356 bp · −
ndhA · NC_058330.1 · 118,437–120,606 bp · −
ndhH · NC_058330.1 · 120,608–121,789 bp · −
rps15 · NC_058330.1 · 121,890–122,162 bp · −
ycf1 · NC_058330.1 · 122,543–128,095 bp · −
trnR(ACG) · NC_058330.1 · 129,062–129,134 bp · −
rrn5S · NC_058330.1 · 129,369–129,489 bp · −
rrn4.5S · NC_058330.1 · 129,745–129,847 bp · −
rrn23S · NC_058330.1 · 129,946–132,756 bp · −
trnA(UGC) · NC_058330.1 · 132,948–133,826 bp · −
trnI(GAU) · NC_058330.1 · 133,891–134,898 bp · −
rrn16S · NC_058330.1 · 135,188–136,678 bp · −
trnV(GAC) · NC_058330.1 · 136,906–136,977 bp · −
ycf15 · NC_058330.1 · 143,280–143,528 bp · −
ycf2 · NC_058330.1 · 143,571–150,437 bp · −
psbK · NC_058330.1 · 8,034–8,219 bp · +
psbI · NC_058330.1 · 8,598–8,708 bp · +
trnG(UCC) · NC_058330.1 · 9,609–10,368 bp · +
trnR(UCU) · NC_058330.1 · 10,542–10,616 bp · +
trnC(GCA) · NC_058330.1 · 28,650–28,725 bp · +
petN · NC_058330.1 · 29,551–29,640 bp · +
psbD · NC_058330.1 · 33,337–34,398 bp · +
psbC · NC_058330.1 · 34,346–35,767 bp · +
psbZ · NC_058330.1 · 36,416–36,604 bp · +
trnG(GCC) · NC_058330.1 · 36,828–36,898 bp · +
trnS(GGA) · NC_058330.1 · 45,176–45,262 bp · +
trnL(UAA) · NC_058330.1 · 47,289–47,862 bp · +
trnF(GAA) · NC_058330.1 · 48,162–48,234 bp · +
trnM(CAU) · NC_058330.1 · 52,364–52,436 bp · +
rbcL · NC_058330.1 · 55,366–56,811 bp · +
accD · NC_058330.1 · 57,502–58,968 bp · +
psaI · NC_058330.1 · 59,656–59,766 bp · +
ycf4 · NC_058330.1 · 60,200–60,754 bp · +
cemA · NC_058330.1 · 61,310–61,999 bp · +
petA · NC_058330.1 · 62,216–63,178 bp · +
petL · NC_058330.1 · 65,948–66,043 bp · +
petG · NC_058330.1 · 66,218–66,331 bp · +
psaJ · NC_058330.1 · 67,049–67,183 bp · +
rpl33 · NC_058330.1 · 67,648–67,848 bp · +
rps18 · NC_058330.1 · 68,018–68,323 bp · +
rps12 · NC_058330.1 · 138,594–139,387 bp · +
psbB · NC_058330.1 · 72,248–73,774 bp · +
psbT · NC_058330.1 · 73,969–74,076 bp · +
psbH · NC_058330.1 · 74,372–74,593 bp · +
petB · NC_058330.1 · 74,718–76,098 bp · +
petD · NC_058330.1 · 76,293–77,506 bp · +
ycf2 · NC_058330.1 · 85,966–92,832 bp · +
ycf15 · NC_058330.1 · 92,875–93,123 bp · +
trnV(GAC) · NC_058330.1 · 99,426–99,497 bp · +
rrn16S · NC_058330.1 · 99,725–101,215 bp · +
trnI(GAU) · NC_058330.1 · 101,505–102,512 bp · +
trnA(UGC) · NC_058330.1 · 102,577–103,455 bp · +
rrn23S · NC_058330.1 · 103,647–106,457 bp · +
rrn4.5S · NC_058330.1 · 106,556–106,658 bp · +
rrn5S · NC_058330.1 · 106,914–107,034 bp · +
trnR(ACG) · NC_058330.1 · 107,269–107,341 bp · +
ycf1 · NC_058330.1 · 108,308–109,426 bp · +
rpl32 · NC_058330.1 · 112,073–112,249 bp · +
trnL(UAG) · NC_058330.1 · 112,973–113,052 bp · +
ccsA · NC_058330.1 · 113,136–114,107 bp · +
trnN(GUU) · NC_058330.1 · 128,416–128,487 bp · +
rps7 · NC_058330.1 · 139,441–139,908 bp · +
ndhB · NC_058330.1 · 140,183–142,394 bp · +
trnL(CAA) · NC_058330.1 · 142,939–143,019 bp · +
trnI(CAU) · NC_058330.1 · 150,526–150,599 bp · +
rpl23 · NC_058330.1 · 150,765–151,046 bp · +
rpl2 · NC_058330.1 · 151,065–152,556 bp · +
rps19 · NC_058330.1 · 152,609–152,650 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Colquhounia seguinii
ANNOTATED PLASTOME
NC_058330.1
152,650 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38162 76325 114488 152650 bp
Forward strand 5′ → 3′
psbK psbI trnG(UCC) trnR(UCU) trnC(GCA) petN psbD psbC psbZ trnG(GCC) trnS(GGA) trnL(UAA) trnF(GAA) trnM(CAU) rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV(GAC) rrn16S trnI(GAU) trnA(UGC) rrn23S rrn4.5S rrn5S trnR(ACG) ycf1 rpl32 trnL(UAG) ccsA trnN(GUU) rps12 rps7 ndhB trnL(CAA) trnI(CAU) rpl23 rpl2 rps19
trnH(GUG) psbA trnK(UUU) matK rps16 trnQ(UUG) trnS(GCU) atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD(GUC) trnY(GUA) trnE(UUC) trnT(GGU) trnS(UGA) trnfM(CAU) rps14 psaB psaA ycf3 rps4 trnT(UGU) ndhJ ndhK ndhC trnV(UAC) atpE atpB psbJ psbL psbF psbE trnW(CCA) trnP(UGG) rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI(CAU) trnL(CAA) ndhB rps7 rps12 trnN(GUU) ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR(ACG) rrn5S rrn4.5S rrn23S trnA(UGC) trnI(GAU) rrn16S trnV(GAC) ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH(GUG) gene − 2 76 75 Locate
psbA gene − 506 1564 1059 Locate
trnK(UUU) gene − 1797 4387 2591 Locate
matK gene − 2101 3636 1536 Locate
rps16 gene − 5314 6453 1140 Locate
trnQ(UUG) gene − 7626 7697 72 Locate
psbK gene + 8034 8219 186 Locate
psbI gene + 8598 8708 111 Locate
trnS(GCU) gene − 8832 8919 88 Locate
trnG(UCC) gene + 9609 10368 760 Locate
trnR(UCU) gene + 10542 10616 75 Locate
atpA gene − 10713 12236 1524 Locate
atpF gene − 12325 13539 1215 Locate
atpH gene − 13909 14154 246 Locate
atpI gene − 15161 15904 744 Locate
rps2 gene − 16125 16835 711 Locate
rpoC2 gene − 17056 21246 4191 Locate
rpoC1 gene − 21401 24265 2865 Locate
rpoB gene − 24271 27483 3213 Locate
trnC(GCA) gene + 28650 28725 76 Locate
petN gene + 29551 29640 90 Locate
psbM gene − 30431 30535 105 Locate
trnD(GUC) gene − 31059 31132 74 Locate
trnY(GUA) gene − 31247 31330 84 Locate
trnE(UUC) gene − 31390 31459 70 Locate
trnT(GGU) gene − 32027 32099 73 Locate
psbD gene + 33337 34398 1062 Locate
psbC gene + 34346 35767 1422 Locate
trnS(UGA) gene − 35998 36090 93 Locate
psbZ gene + 36416 36604 189 Locate
trnG(GCC) gene + 36828 36898 71 Locate
trnfM(CAU) gene − 37048 37121 74 Locate
rps14 gene − 37271 37573 303 Locate
psaB gene − 37701 39905 2205 Locate
psaA gene − 39931 42183 2253 Locate
ycf3 gene − 42905 44849 1945 Locate
trnS(GGA) gene + 45176 45262 87 Locate
rps4 gene − 45551 46156 606 Locate
trnT(UGU) gene − 46547 46619 73 Locate
trnL(UAA) gene + 47289 47862 574 Locate
trnF(GAA) gene + 48162 48234 73 Locate
ndhJ gene − 48899 49375 477 Locate
ndhK gene − 49476 50153 678 Locate
ndhC gene − 50207 50569 363 Locate
trnV(UAC) gene − 51523 52175 653 Locate
trnM(CAU) gene + 52364 52436 73 Locate
atpE gene − 52662 53063 402 Locate
atpB gene − 53060 54562 1503 Locate
rbcL gene + 55366 56811 1446 Locate
accD gene + 57502 58968 1467 Locate
psaI gene + 59656 59766 111 Locate
ycf4 gene + 60200 60754 555 Locate
cemA gene + 61310 61999 690 Locate
petA gene + 62216 63178 963 Locate
psbJ gene − 64229 64351 123 Locate
psbL gene − 64489 64605 117 Locate
psbF gene − 64629 64748 120 Locate
psbE gene − 64763 65014 252 Locate
petL gene + 65948 66043 96 Locate
petG gene + 66218 66331 114 Locate
trnW(CCA) gene − 66457 66530 74 Locate
trnP(UGG) gene − 66701 66774 74 Locate
psaJ gene + 67049 67183 135 Locate
rpl33 gene + 67648 67848 201 Locate
rps18 gene + 68018 68323 306 Locate
rpl20 gene − 68541 68927 387 Locate
rps12 gene − 69686 69799 114 Locate
clpP gene − 69926 71804 1879 Locate
psbB gene + 72248 73774 1527 Locate
psbT gene + 73969 74076 108 Locate
psbN gene − 74137 74268 132 Locate
psbH gene + 74372 74593 222 Locate
petB gene + 74718 76098 1381 Locate
petD gene + 76293 77506 1214 Locate
rpoA gene − 77669 78682 1014 Locate
rps11 gene − 78754 79170 417 Locate
rpl36 gene − 79273 79386 114 Locate
infA gene − 79482 79715 234 Locate
rps8 gene − 79838 80251 414 Locate
rpl14 gene − 80425 80793 369 Locate
rpl16 gene − 80920 82198 1279 Locate
rps3 gene − 82345 83007 663 Locate
rpl22 gene − 82992 83456 465 Locate
rps19 gene − 83516 83794 279 Locate
rpl2 gene − 83847 85338 1492 Locate
rpl23 gene − 85357 85638 282 Locate
trnI(CAU) gene − 85804 85877 74 Locate
ycf2 gene + 85966 92832 6867 Locate
ycf15 gene + 92875 93123 249 Locate
trnL(CAA) gene − 93384 93464 81 Locate
ndhB gene − 94009 96220 2212 Locate
rps7 gene − 96495 96962 468 Locate
rps12 gene − 97016 97809 794 Locate
trnV(GAC) gene + 99426 99497 72 Locate
rrn16S gene + 99725 101215 1491 Locate
trnI(GAU) gene + 101505 102512 1008 Locate
trnA(UGC) gene + 102577 103455 879 Locate
rrn23S gene + 103647 106457 2811 Locate
rrn4.5S gene + 106556 106658 103 Locate
rrn5S gene + 106914 107034 121 Locate
trnR(ACG) gene + 107269 107341 73 Locate
trnN(GUU) gene − 107916 107987 72 Locate
ycf1 gene + 108308 109426 1119 Locate
ndhF gene − 109372 111594 2223 Locate
rpl32 gene + 112073 112249 177 Locate
trnL(UAG) gene + 112973 113052 80 Locate
ccsA gene + 113136 114107 972 Locate
ndhD gene − 114289 115818 1530 Locate
psaC gene − 115911 116156 246 Locate
ndhE gene − 116419 116724 306 Locate
ndhG gene − 116940 117470 531 Locate
ndhI gene − 117850 118356 507 Locate
ndhA gene − 118437 120606 2170 Locate
ndhH gene − 120608 121789 1182 Locate
rps15 gene − 121890 122162 273 Locate
ycf1 gene − 122543 128095 5553 Locate
trnN(GUU) gene + 128416 128487 72 Locate
trnR(ACG) gene − 129062 129134 73 Locate
rrn5S gene − 129369 129489 121 Locate
rrn4.5S gene − 129745 129847 103 Locate
rrn23S gene − 129946 132756 2811 Locate
trnA(UGC) gene − 132948 133826 879 Locate
trnI(GAU) gene − 133891 134898 1008 Locate
rrn16S gene − 135188 136678 1491 Locate
trnV(GAC) gene − 136906 136977 72 Locate
rps12 gene + 138594 139387 794 Locate
rps7 gene + 139441 139908 468 Locate
ndhB gene + 140183 142394 2212 Locate
trnL(CAA) gene + 142939 143019 81 Locate
ycf15 gene − 143280 143528 249 Locate
ycf2 gene − 143571 150437 6867 Locate
trnI(CAU) gene + 150526 150599 74 Locate
rpl23 gene + 150765 151046 282 Locate
rpl2 gene + 151065 152556 1492 Locate
rps19 gene + 152609 152650 42 Locate
Status Available
Accession NC_058330.1
Length 152,650 bp
GC content 38.3%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources