Colquhounia vestita chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH(GUG) · NC_058331.1 · 2–76 bp · −
psbA · NC_058331.1 · 425–1,483 bp · −
trnK(UUU) · NC_058331.1 · 1,716–4,305 bp · −
matK · NC_058331.1 · 2,020–3,555 bp · −
rps16 · NC_058331.1 · 5,077–6,217 bp · −
trnQ(UUG) · NC_058331.1 · 7,183–7,254 bp · −
trnS(GCU) · NC_058331.1 · 8,388–8,475 bp · −
atpA · NC_058331.1 · 10,273–11,796 bp · −
atpF · NC_058331.1 · 11,885–13,109 bp · −
atpH · NC_058331.1 · 13,478–13,723 bp · −
atpI · NC_058331.1 · 14,740–15,483 bp · −
rps2 · NC_058331.1 · 15,714–16,424 bp · −
rpoC2 · NC_058331.1 · 16,645–20,835 bp · −
rpoC1 · NC_058331.1 · 20,990–23,849 bp · −
rpoB · NC_058331.1 · 23,855–27,067 bp · −
psbM · NC_058331.1 · 30,026–30,130 bp · −
trnD(GUC) · NC_058331.1 · 30,654–30,727 bp · −
trnY(GUA) · NC_058331.1 · 30,842–30,925 bp · −
trnE(UUC) · NC_058331.1 · 30,985–31,054 bp · −
trnT(GGU) · NC_058331.1 · 31,618–31,690 bp · −
trnS(UGA) · NC_058331.1 · 35,576–35,668 bp · −
trnfM(CAU) · NC_058331.1 · 36,626–36,699 bp · −
rps14 · NC_058331.1 · 36,849–37,151 bp · −
psaB · NC_058331.1 · 37,279–39,483 bp · −
psaA · NC_058331.1 · 39,509–41,761 bp · −
ycf3 · NC_058331.1 · 42,489–44,435 bp · −
rps4 · NC_058331.1 · 45,138–45,743 bp · −
trnT(UGU) · NC_058331.1 · 46,134–46,206 bp · −
ndhJ · NC_058331.1 · 48,498–48,974 bp · −
ndhK · NC_058331.1 · 49,075–49,752 bp · −
ndhC · NC_058331.1 · 49,806–50,168 bp · −
trnV(UAC) · NC_058331.1 · 51,119–51,771 bp · −
atpE · NC_058331.1 · 52,257–52,658 bp · −
atpB · NC_058331.1 · 52,655–54,157 bp · −
psbJ · NC_058331.1 · 63,823–63,945 bp · −
psbL · NC_058331.1 · 64,083–64,199 bp · −
psbF · NC_058331.1 · 64,223–64,342 bp · −
psbE · NC_058331.1 · 64,357–64,608 bp · −
trnW(CCA) · NC_058331.1 · 65,647–65,720 bp · −
trnP(UGG) · NC_058331.1 · 65,890–65,963 bp · −
rpl20 · NC_058331.1 · 67,738–68,124 bp · −
rps12 · NC_058331.1 · 68,884–68,997 bp · −
rps12 · NC_058331.1 · 96,231–97,024 bp · −
clpP · NC_058331.1 · 69,125–71,003 bp · −
psbN · NC_058331.1 · 73,322–73,453 bp · −
rpoA · NC_058331.1 · 76,853–77,866 bp · −
rps11 · NC_058331.1 · 77,938–78,354 bp · −
rpl36 · NC_058331.1 · 78,457–78,570 bp · −
infA · NC_058331.1 · 78,666–78,899 bp · −
rps8 · NC_058331.1 · 79,023–79,436 bp · −
rpl14 · NC_058331.1 · 79,611–79,979 bp · −
rpl16 · NC_058331.1 · 80,106–81,413 bp · −
rps3 · NC_058331.1 · 81,560–82,222 bp · −
rpl22 · NC_058331.1 · 82,207–82,671 bp · −
rps19 · NC_058331.1 · 82,731–83,009 bp · −
rpl2 · NC_058331.1 · 83,062–84,553 bp · −
rpl23 · NC_058331.1 · 84,572–84,853 bp · −
trnI(CAU) · NC_058331.1 · 85,019–85,092 bp · −
trnL(CAA) · NC_058331.1 · 92,599–92,679 bp · −
ndhB · NC_058331.1 · 93,224–95,435 bp · −
rps7 · NC_058331.1 · 95,710–96,177 bp · −
trnN(GUU) · NC_058331.1 · 107,130–107,201 bp · −
ndhF · NC_058331.1 · 108,591–110,813 bp · −
ndhD · NC_058331.1 · 113,365–114,885 bp · −
psaC · NC_058331.1 · 114,992–115,237 bp · −
ndhE · NC_058331.1 · 115,500–115,805 bp · −
ndhG · NC_058331.1 · 116,021–116,551 bp · −
ndhI · NC_058331.1 · 116,931–117,437 bp · −
ndhA · NC_058331.1 · 117,518–119,690 bp · −
ndhH · NC_058331.1 · 119,692–120,873 bp · −
rps15 · NC_058331.1 · 120,974–121,246 bp · −
ycf1 · NC_058331.1 · 121,648–127,206 bp · −
trnR(ACG) · NC_058331.1 · 128,177–128,249 bp · −
rrn5S · NC_058331.1 · 128,484–128,604 bp · −
rrn4.5S · NC_058331.1 · 128,860–128,962 bp · −
rrn23S · NC_058331.1 · 129,061–131,871 bp · −
trnA(UGC) · NC_058331.1 · 132,063–132,941 bp · −
trnI(GAU) · NC_058331.1 · 133,006–134,013 bp · −
rrn16S · NC_058331.1 · 134,303–135,793 bp · −
trnV(GAC) · NC_058331.1 · 136,021–136,092 bp · −
ycf15 · NC_058331.1 · 142,395–142,643 bp · −
ycf2 · NC_058331.1 · 142,686–149,552 bp · −
psbK · NC_058331.1 · 7,591–7,776 bp · +
psbI · NC_058331.1 · 8,154–8,264 bp · +
trnG(UCC) · NC_058331.1 · 9,167–9,928 bp · +
trnR(UCU) · NC_058331.1 · 10,102–10,176 bp · +
trnC(GCA) · NC_058331.1 · 28,235–28,310 bp · +
petN · NC_058331.1 · 29,147–29,236 bp · +
psbD · NC_058331.1 · 32,915–33,976 bp · +
psbC · NC_058331.1 · 33,924–35,345 bp · +
psbZ · NC_058331.1 · 35,994–36,182 bp · +
trnG(GCC) · NC_058331.1 · 36,406–36,476 bp · +
trnS(GGA) · NC_058331.1 · 44,762–44,848 bp · +
trnL(UAA) · NC_058331.1 · 46,888–47,461 bp · +
trnF(GAA) · NC_058331.1 · 47,761–47,833 bp · +
trnM(CAU) · NC_058331.1 · 51,960–52,032 bp · +
rbcL · NC_058331.1 · 54,961–56,406 bp · +
accD · NC_058331.1 · 57,096–58,562 bp · +
psaI · NC_058331.1 · 59,249–59,359 bp · +
ycf4 · NC_058331.1 · 59,793–60,347 bp · +
cemA · NC_058331.1 · 60,903–61,592 bp · +
petA · NC_058331.1 · 61,809–62,771 bp · +
petL · NC_058331.1 · 65,138–65,233 bp · +
petG · NC_058331.1 · 65,408–65,521 bp · +
psaJ · NC_058331.1 · 66,239–66,373 bp · +
rpl33 · NC_058331.1 · 66,844–67,044 bp · +
rps18 · NC_058331.1 · 67,215–67,520 bp · +
rps12 · NC_058331.1 · 137,709–138,502 bp · +
psbB · NC_058331.1 · 71,433–72,959 bp · +
psbT · NC_058331.1 · 73,154–73,261 bp · +
psbH · NC_058331.1 · 73,557–73,778 bp · +
petB · NC_058331.1 · 73,903–75,282 bp · +
petD · NC_058331.1 · 75,477–76,690 bp · +
ycf2 · NC_058331.1 · 85,181–92,047 bp · +
ycf15 · NC_058331.1 · 92,090–92,338 bp · +
trnV(GAC) · NC_058331.1 · 98,641–98,712 bp · +
rrn16S · NC_058331.1 · 98,940–100,430 bp · +
trnI(GAU) · NC_058331.1 · 100,720–101,727 bp · +
trnA(UGC) · NC_058331.1 · 101,792–102,670 bp · +
rrn23S · NC_058331.1 · 102,862–105,672 bp · +
rrn4.5S · NC_058331.1 · 105,771–105,873 bp · +
rrn5S · NC_058331.1 · 106,129–106,249 bp · +
trnR(ACG) · NC_058331.1 · 106,484–106,556 bp · +
ycf1 · NC_058331.1 · 107,527–108,645 bp · +
rpl32 · NC_058331.1 · 111,146–111,322 bp · +
trnL(UAG) · NC_058331.1 · 112,049–112,128 bp · +
ccsA · NC_058331.1 · 112,212–113,183 bp · +
trnN(GUU) · NC_058331.1 · 127,532–127,603 bp · +
rps7 · NC_058331.1 · 138,556–139,023 bp · +
ndhB · NC_058331.1 · 139,298–141,509 bp · +
trnL(CAA) · NC_058331.1 · 142,054–142,134 bp · +
trnI(CAU) · NC_058331.1 · 149,641–149,714 bp · +
rpl23 · NC_058331.1 · 149,880–150,161 bp · +
rpl2 · NC_058331.1 · 150,180–151,671 bp · +
rps19 · NC_058331.1 · 151,724–151,765 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Colquhounia vestita
ANNOTATED PLASTOME
NC_058331.1
151,765 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37941 75882 113824 151765 bp
Forward strand 5′ → 3′
psbK psbI trnG(UCC) trnR(UCU) trnC(GCA) petN psbD psbC psbZ trnG(GCC) trnS(GGA) trnL(UAA) trnF(GAA) trnM(CAU) rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV(GAC) rrn16S trnI(GAU) trnA(UGC) rrn23S rrn4.5S rrn5S trnR(ACG) ycf1 rpl32 trnL(UAG) ccsA trnN(GUU) rps12 rps7 ndhB trnL(CAA) trnI(CAU) rpl23 rpl2 rps19
trnH(GUG) psbA trnK(UUU) matK rps16 trnQ(UUG) trnS(GCU) atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD(GUC) trnY(GUA) trnE(UUC) trnT(GGU) trnS(UGA) trnfM(CAU) rps14 psaB psaA ycf3 rps4 trnT(UGU) ndhJ ndhK ndhC trnV(UAC) atpE atpB psbJ psbL psbF psbE trnW(CCA) trnP(UGG) rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI(CAU) trnL(CAA) ndhB rps7 rps12 trnN(GUU) ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR(ACG) rrn5S rrn4.5S rrn23S trnA(UGC) trnI(GAU) rrn16S trnV(GAC) ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH(GUG) gene − 2 76 75 Locate
psbA gene − 425 1483 1059 Locate
trnK(UUU) gene − 1716 4305 2590 Locate
matK gene − 2020 3555 1536 Locate
rps16 gene − 5077 6217 1141 Locate
trnQ(UUG) gene − 7183 7254 72 Locate
psbK gene + 7591 7776 186 Locate
psbI gene + 8154 8264 111 Locate
trnS(GCU) gene − 8388 8475 88 Locate
trnG(UCC) gene + 9167 9928 762 Locate
trnR(UCU) gene + 10102 10176 75 Locate
atpA gene − 10273 11796 1524 Locate
atpF gene − 11885 13109 1225 Locate
atpH gene − 13478 13723 246 Locate
atpI gene − 14740 15483 744 Locate
rps2 gene − 15714 16424 711 Locate
rpoC2 gene − 16645 20835 4191 Locate
rpoC1 gene − 20990 23849 2860 Locate
rpoB gene − 23855 27067 3213 Locate
trnC(GCA) gene + 28235 28310 76 Locate
petN gene + 29147 29236 90 Locate
psbM gene − 30026 30130 105 Locate
trnD(GUC) gene − 30654 30727 74 Locate
trnY(GUA) gene − 30842 30925 84 Locate
trnE(UUC) gene − 30985 31054 70 Locate
trnT(GGU) gene − 31618 31690 73 Locate
psbD gene + 32915 33976 1062 Locate
psbC gene + 33924 35345 1422 Locate
trnS(UGA) gene − 35576 35668 93 Locate
psbZ gene + 35994 36182 189 Locate
trnG(GCC) gene + 36406 36476 71 Locate
trnfM(CAU) gene − 36626 36699 74 Locate
rps14 gene − 36849 37151 303 Locate
psaB gene − 37279 39483 2205 Locate
psaA gene − 39509 41761 2253 Locate
ycf3 gene − 42489 44435 1947 Locate
trnS(GGA) gene + 44762 44848 87 Locate
rps4 gene − 45138 45743 606 Locate
trnT(UGU) gene − 46134 46206 73 Locate
trnL(UAA) gene + 46888 47461 574 Locate
trnF(GAA) gene + 47761 47833 73 Locate
ndhJ gene − 48498 48974 477 Locate
ndhK gene − 49075 49752 678 Locate
ndhC gene − 49806 50168 363 Locate
trnV(UAC) gene − 51119 51771 653 Locate
trnM(CAU) gene + 51960 52032 73 Locate
atpE gene − 52257 52658 402 Locate
atpB gene − 52655 54157 1503 Locate
rbcL gene + 54961 56406 1446 Locate
accD gene + 57096 58562 1467 Locate
psaI gene + 59249 59359 111 Locate
ycf4 gene + 59793 60347 555 Locate
cemA gene + 60903 61592 690 Locate
petA gene + 61809 62771 963 Locate
psbJ gene − 63823 63945 123 Locate
psbL gene − 64083 64199 117 Locate
psbF gene − 64223 64342 120 Locate
psbE gene − 64357 64608 252 Locate
petL gene + 65138 65233 96 Locate
petG gene + 65408 65521 114 Locate
trnW(CCA) gene − 65647 65720 74 Locate
trnP(UGG) gene − 65890 65963 74 Locate
psaJ gene + 66239 66373 135 Locate
rpl33 gene + 66844 67044 201 Locate
rps18 gene + 67215 67520 306 Locate
rpl20 gene − 67738 68124 387 Locate
rps12 gene − 68884 68997 114 Locate
clpP gene − 69125 71003 1879 Locate
psbB gene + 71433 72959 1527 Locate
psbT gene + 73154 73261 108 Locate
psbN gene − 73322 73453 132 Locate
psbH gene + 73557 73778 222 Locate
petB gene + 73903 75282 1380 Locate
petD gene + 75477 76690 1214 Locate
rpoA gene − 76853 77866 1014 Locate
rps11 gene − 77938 78354 417 Locate
rpl36 gene − 78457 78570 114 Locate
infA gene − 78666 78899 234 Locate
rps8 gene − 79023 79436 414 Locate
rpl14 gene − 79611 79979 369 Locate
rpl16 gene − 80106 81413 1308 Locate
rps3 gene − 81560 82222 663 Locate
rpl22 gene − 82207 82671 465 Locate
rps19 gene − 82731 83009 279 Locate
rpl2 gene − 83062 84553 1492 Locate
rpl23 gene − 84572 84853 282 Locate
trnI(CAU) gene − 85019 85092 74 Locate
ycf2 gene + 85181 92047 6867 Locate
ycf15 gene + 92090 92338 249 Locate
trnL(CAA) gene − 92599 92679 81 Locate
ndhB gene − 93224 95435 2212 Locate
rps7 gene − 95710 96177 468 Locate
rps12 gene − 96231 97024 794 Locate
trnV(GAC) gene + 98641 98712 72 Locate
rrn16S gene + 98940 100430 1491 Locate
trnI(GAU) gene + 100720 101727 1008 Locate
trnA(UGC) gene + 101792 102670 879 Locate
rrn23S gene + 102862 105672 2811 Locate
rrn4.5S gene + 105771 105873 103 Locate
rrn5S gene + 106129 106249 121 Locate
trnR(ACG) gene + 106484 106556 73 Locate
trnN(GUU) gene − 107130 107201 72 Locate
ycf1 gene + 107527 108645 1119 Locate
ndhF gene − 108591 110813 2223 Locate
rpl32 gene + 111146 111322 177 Locate
trnL(UAG) gene + 112049 112128 80 Locate
ccsA gene + 112212 113183 972 Locate
ndhD gene − 113365 114885 1521 Locate
psaC gene − 114992 115237 246 Locate
ndhE gene − 115500 115805 306 Locate
ndhG gene − 116021 116551 531 Locate
ndhI gene − 116931 117437 507 Locate
ndhA gene − 117518 119690 2173 Locate
ndhH gene − 119692 120873 1182 Locate
rps15 gene − 120974 121246 273 Locate
ycf1 gene − 121648 127206 5559 Locate
trnN(GUU) gene + 127532 127603 72 Locate
trnR(ACG) gene − 128177 128249 73 Locate
rrn5S gene − 128484 128604 121 Locate
rrn4.5S gene − 128860 128962 103 Locate
rrn23S gene − 129061 131871 2811 Locate
trnA(UGC) gene − 132063 132941 879 Locate
trnI(GAU) gene − 133006 134013 1008 Locate
rrn16S gene − 134303 135793 1491 Locate
trnV(GAC) gene − 136021 136092 72 Locate
rps12 gene + 137709 138502 794 Locate
rps7 gene + 138556 139023 468 Locate
ndhB gene + 139298 141509 2212 Locate
trnL(CAA) gene + 142054 142134 81 Locate
ycf15 gene − 142395 142643 249 Locate
ycf2 gene − 142686 149552 6867 Locate
trnI(CAU) gene + 149641 149714 74 Locate
rpl23 gene + 149880 150161 282 Locate
rpl2 gene + 150180 151671 1492 Locate
rps19 gene + 151724 151765 42 Locate
Status Available
Accession NC_058331.1
Length 151,765 bp
GC content 38.4%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources