Horminum pyrenaicum chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP165049.1 · 10–84 bp · −
psbA · PP165049.1 · 400–1,458 bp · −
trnK-UUU · PP165049.1 · 1,696–4,271 bp · −
matK · PP165049.1 · 2,011–3,534 bp · −
rps16 · PP165049.1 · 4,809–5,936 bp · −
trnQ-UUG · PP165049.1 · 6,945–7,017 bp · −
trnS-GCU · PP165049.1 · 8,238–8,325 bp · −
atpA · PP165049.1 · 10,150–11,673 bp · −
atpF · PP165049.1 · 11,775–13,036 bp · −
atpH · PP165049.1 · 13,318–13,563 bp · −
atpI · PP165049.1 · 14,593–15,336 bp · −
rps2 · PP165049.1 · 15,559–16,269 bp · −
rpoC2 · PP165049.1 · 16,483–20,658 bp · −
rpoC1 · PP165049.1 · 20,831–23,640 bp · −
rpoB · PP165049.1 · 23,667–26,879 bp · −
psbM · PP165049.1 · 29,372–29,476 bp · −
trnD-GUC · PP165049.1 · 29,993–30,069 bp · −
trnY-GUA · PP165049.1 · 30,178–30,263 bp · −
trnE-UUC · PP165049.1 · 30,342–30,414 bp · −
trnS-UGA · PP165049.1 · 35,071–35,163 bp · −
trnM-CAU · PP165049.1 · 36,196–36,270 bp · −
rps14 · PP165049.1 · 36,420–36,722 bp · −
psaB · PP165049.1 · 36,844–39,048 bp · −
psaA · PP165049.1 · 39,074–41,326 bp · −
ycf3 · PP165049.1 · 42,156–44,096 bp · −
rps4 · PP165049.1 · 45,291–45,896 bp · −
trnT-UGU · PP165049.1 · 46,255–46,329 bp · −
ndhJ · PP165049.1 · 48,546–49,022 bp · −
ndhK · PP165049.1 · 49,133–49,810 bp · −
ndhC · PP165049.1 · 49,862–50,224 bp · −
trnV-UAC · PP165049.1 · 51,172–51,821 bp · −
atpE · PP165049.1 · 52,291–52,692 bp · −
atpB · PP165049.1 · 52,689–54,185 bp · −
psbJ · PP165049.1 · 63,661–63,783 bp · −
psbL · PP165049.1 · 63,918–64,034 bp · −
psbF · PP165049.1 · 64,058–64,177 bp · −
psbE · PP165049.1 · 64,192–64,443 bp · −
trnW-CCA · PP165049.1 · 65,798–65,871 bp · −
trnP-UGG · PP165049.1 · 66,043–66,118 bp · −
rpl20 · PP165049.1 · 67,897–68,283 bp · −
rps12 · PP165049.1 · 69,090–69,203 bp · −
rps12 · PP165049.1 · 96,403–97,196 bp · −
clpP1 · PP165049.1 · 69,326–71,232 bp · −
psbN · PP165049.1 · 73,484–73,615 bp · −
rpoA · PP165049.1 · 76,989–77,996 bp · −
rps11 · PP165049.1 · 78,068–78,484 bp · −
rpl36 · PP165049.1 · 78,594–78,707 bp · −
infA · PP165049.1 · 78,803–79,036 bp · −
rps8 · PP165049.1 · 79,164–79,568 bp · −
rpl14 · PP165049.1 · 79,766–80,134 bp · −
rpl16 · PP165049.1 · 80,266–81,543 bp · −
rps3 · PP165049.1 · 81,702–82,364 bp · −
rpl22 · PP165049.1 · 82,349–82,816 bp · −
rps19 · PP165049.1 · 82,886–83,164 bp · −
rpl2 · PP165049.1 · 83,224–84,713 bp · −
rpl23 · PP165049.1 · 84,732–85,013 bp · −
trnM-CAU · PP165049.1 · 85,178–85,252 bp · −
trnL-CAA · PP165049.1 · 92,767–92,849 bp · −
ndhB · PP165049.1 · 93,409–95,616 bp · −
rps7 · PP165049.1 · 95,882–96,349 bp · −
trnN-GUU · PP165049.1 · 107,222–107,295 bp · −
ndhF · PP165049.1 · 108,648–110,879 bp · −
ndhD · PP165049.1 · 113,391–114,893 bp · −
psaC · PP165049.1 · 115,014–115,259 bp · −
ndhE · PP165049.1 · 115,512–115,817 bp · −
ndhG · PP165049.1 · 116,038–116,568 bp · −
ndhI · PP165049.1 · 116,945–117,451 bp · −
ndhA · PP165049.1 · 117,540–119,638 bp · −
ndhH · PP165049.1 · 119,640–120,821 bp · −
rps15 · PP165049.1 · 120,921–121,193 bp · −
ycf1 · PP165049.1 · 121,593–127,145 bp · −
trnR-ACG · PP165049.1 · 128,062–128,136 bp · −
rrn5 · PP165049.1 · 128,380–128,500 bp · −
rrn4.5 · PP165049.1 · 128,761–128,863 bp · −
rrn23 · PP165049.1 · 128,962–131,772 bp · −
trnA-UGC · PP165049.1 · 131,931–132,809 bp · −
trnI · PP165049.1 · 132,879–133,896 bp · −
rrn16 · PP165049.1 · 134,195–135,685 bp · −
trnV-GAC · PP165049.1 · 135,912–135,983 bp · −
ycf2 · PP165049.1 · 142,587–149,408 bp · −
psbK · PP165049.1 · 7,419–7,604 bp · +
psbI · PP165049.1 · 7,995–8,105 bp · +
trnS-CGA · PP165049.1 · 9,035–9,790 bp · +
trnR-UCU · PP165049.1 · 9,973–10,044 bp · +
trnC-GCA · PP165049.1 · 28,074–28,144 bp · +
petN · PP165049.1 · 28,291–28,380 bp · +
trnT-GGU · PP165049.1 · 30,969–31,042 bp · +
psbD · PP165049.1 · 32,397–33,458 bp · +
psbC · PP165049.1 · 33,442–34,827 bp · +
psbZ · PP165049.1 · 35,497–35,685 bp · +
trnG-GCC · PP165049.1 · 35,966–36,037 bp · +
trnS-GGA · PP165049.1 · 44,922–45,009 bp · +
trnL-UAA · PP165049.1 · 46,990–47,559 bp · +
trnF-GAA · PP165049.1 · 47,826–47,899 bp · +
trnM-CAU · PP165049.1 · 52,002–52,074 bp · +
rbcL · PP165049.1 · 54,983–56,416 bp · +
accD · PP165049.1 · 57,095–58,576 bp · +
psaI · PP165049.1 · 59,049–59,159 bp · +
ycf4 · PP165049.1 · 59,599–60,153 bp · +
cemA · PP165049.1 · 60,763–61,452 bp · +
petA · PP165049.1 · 61,667–62,629 bp · +
petL · PP165049.1 · 65,305–65,400 bp · +
petG · PP165049.1 · 65,579–65,692 bp · +
psaJ · PP165049.1 · 66,408–66,542 bp · +
rpl33 · PP165049.1 · 66,984–67,184 bp · +
rps18 · PP165049.1 · 67,355–67,660 bp · +
rps12 · PP165049.1 · 137,573–138,366 bp · +
psbB · PP165049.1 · 71,682–73,208 bp · +
psbT · PP165049.1 · 73,316–73,423 bp · +
psbH · PP165049.1 · 73,721–73,942 bp · +
petB · PP165049.1 · 74,068–75,440 bp · +
petD · PP165049.1 · 75,628–76,812 bp · +
ycf2 · PP165049.1 · 85,361–92,182 bp · +
trnV-GAC · PP165049.1 · 98,786–98,857 bp · +
rrn16 · PP165049.1 · 99,084–100,574 bp · +
trnI · PP165049.1 · 100,873–101,890 bp · +
trnA-UGC · PP165049.1 · 101,960–102,838 bp · +
rrn23 · PP165049.1 · 102,997–105,807 bp · +
rrn4.5 · PP165049.1 · 105,906–106,008 bp · +
rrn5 · PP165049.1 · 106,269–106,389 bp · +
trnR-ACG · PP165049.1 · 106,633–106,707 bp · +
ycf1 · PP165049.1 · 107,624–108,754 bp · +
rpl32 · PP165049.1 · 111,342–111,512 bp · +
trnL-UAG · PP165049.1 · 112,005–112,084 bp · +
ccsA · PP165049.1 · 112,182–113,159 bp · +
trnN-GUU · PP165049.1 · 127,474–127,547 bp · +
rps7 · PP165049.1 · 138,420–138,887 bp · +
ndhB · PP165049.1 · 139,153–141,360 bp · +
trnL-CAA · PP165049.1 · 141,920–142,002 bp · +
trnM-CAU · PP165049.1 · 149,517–149,591 bp · +
rpl23 · PP165049.1 · 149,756–150,037 bp · +
rpl2 · PP165049.1 · 150,056–151,545 bp · +
rps19 · PP165049.1 · 151,605–151,647 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Horminum pyrenaicum
ANNOTATED PLASTOME
PP165049.1
151,647 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37912 75824 113735 151647 bp
Forward strand 5′ → 3′
psbK psbI trnS-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnM-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP1 psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnM-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 10 84 75 Locate
psbA gene − 400 1458 1059 Locate
trnK-UUU gene − 1696 4271 2576 Locate
matK gene − 2011 3534 1524 Locate
rps16 gene − 4809 5936 1128 Locate
trnQ-UUG gene − 6945 7017 73 Locate
psbK gene + 7419 7604 186 Locate
psbI gene + 7995 8105 111 Locate
trnS-GCU gene − 8238 8325 88 Locate
trnS-CGA gene + 9035 9790 756 Locate
trnR-UCU gene + 9973 10044 72 Locate
atpA gene − 10150 11673 1524 Locate
atpF gene − 11775 13036 1262 Locate
atpH gene − 13318 13563 246 Locate
atpI gene − 14593 15336 744 Locate
rps2 gene − 15559 16269 711 Locate
rpoC2 gene − 16483 20658 4176 Locate
rpoC1 gene − 20831 23640 2810 Locate
rpoB gene − 23667 26879 3213 Locate
trnC-GCA gene + 28074 28144 71 Locate
petN gene + 28291 28380 90 Locate
psbM gene − 29372 29476 105 Locate
trnD-GUC gene − 29993 30069 77 Locate
trnY-GUA gene − 30178 30263 86 Locate
trnE-UUC gene − 30342 30414 73 Locate
trnT-GGU gene + 30969 31042 74 Locate
psbD gene + 32397 33458 1062 Locate
psbC gene + 33442 34827 1386 Locate
trnS-UGA gene − 35071 35163 93 Locate
psbZ gene + 35497 35685 189 Locate
trnG-GCC gene + 35966 36037 72 Locate
trnM-CAU gene − 36196 36270 75 Locate
rps14 gene − 36420 36722 303 Locate
psaB gene − 36844 39048 2205 Locate
psaA gene − 39074 41326 2253 Locate
ycf3 gene − 42156 44096 1941 Locate
trnS-GGA gene + 44922 45009 88 Locate
rps4 gene − 45291 45896 606 Locate
trnT-UGU gene − 46255 46329 75 Locate
trnL-UAA gene + 46990 47559 570 Locate
trnF-GAA gene + 47826 47899 74 Locate
ndhJ gene − 48546 49022 477 Locate
ndhK gene − 49133 49810 678 Locate
ndhC gene − 49862 50224 363 Locate
trnV-UAC gene − 51172 51821 650 Locate
trnM-CAU gene + 52002 52074 73 Locate
atpE gene − 52291 52692 402 Locate
atpB gene − 52689 54185 1497 Locate
rbcL gene + 54983 56416 1434 Locate
accD gene + 57095 58576 1482 Locate
psaI gene + 59049 59159 111 Locate
ycf4 gene + 59599 60153 555 Locate
cemA gene + 60763 61452 690 Locate
petA gene + 61667 62629 963 Locate
psbJ gene − 63661 63783 123 Locate
psbL gene − 63918 64034 117 Locate
psbF gene − 64058 64177 120 Locate
psbE gene − 64192 64443 252 Locate
petL gene + 65305 65400 96 Locate
petG gene + 65579 65692 114 Locate
trnW-CCA gene − 65798 65871 74 Locate
trnP-UGG gene − 66043 66118 76 Locate
psaJ gene + 66408 66542 135 Locate
rpl33 gene + 66984 67184 201 Locate
rps18 gene + 67355 67660 306 Locate
rpl20 gene − 67897 68283 387 Locate
rps12 gene − 69090 69203 114 Locate
clpP1 gene − 69326 71232 1907 Locate
psbB gene + 71682 73208 1527 Locate
psbT gene + 73316 73423 108 Locate
psbN gene − 73484 73615 132 Locate
psbH gene + 73721 73942 222 Locate
petB gene + 74068 75440 1373 Locate
petD gene + 75628 76812 1185 Locate
rpoA gene − 76989 77996 1008 Locate
rps11 gene − 78068 78484 417 Locate
rpl36 gene − 78594 78707 114 Locate
infA gene − 78803 79036 234 Locate
rps8 gene − 79164 79568 405 Locate
rpl14 gene − 79766 80134 369 Locate
rpl16 gene − 80266 81543 1278 Locate
rps3 gene − 81702 82364 663 Locate
rpl22 gene − 82349 82816 468 Locate
rps19 gene − 82886 83164 279 Locate
rpl2 gene − 83224 84713 1490 Locate
rpl23 gene − 84732 85013 282 Locate
trnM-CAU gene − 85178 85252 75 Locate
ycf2 gene + 85361 92182 6822 Locate
trnL-CAA gene − 92767 92849 83 Locate
ndhB gene − 93409 95616 2208 Locate
rps7 gene − 95882 96349 468 Locate
rps12 gene − 96403 97196 794 Locate
trnV-GAC gene + 98786 98857 72 Locate
rrn16 gene + 99084 100574 1491 Locate
trnI gene + 100873 101890 1018 Locate
trnA-UGC gene + 101960 102838 879 Locate
rrn23 gene + 102997 105807 2811 Locate
rrn4.5 gene + 105906 106008 103 Locate
rrn5 gene + 106269 106389 121 Locate
trnR-ACG gene + 106633 106707 75 Locate
trnN-GUU gene − 107222 107295 74 Locate
ycf1 gene + 107624 108754 1131 Locate
ndhF gene − 108648 110879 2232 Locate
rpl32 gene + 111342 111512 171 Locate
trnL-UAG gene + 112005 112084 80 Locate
ccsA gene + 112182 113159 978 Locate
ndhD gene − 113391 114893 1503 Locate
psaC gene − 115014 115259 246 Locate
ndhE gene − 115512 115817 306 Locate
ndhG gene − 116038 116568 531 Locate
ndhI gene − 116945 117451 507 Locate
ndhA gene − 117540 119638 2099 Locate
ndhH gene − 119640 120821 1182 Locate
rps15 gene − 120921 121193 273 Locate
ycf1 gene − 121593 127145 5553 Locate
trnN-GUU gene + 127474 127547 74 Locate
trnR-ACG gene − 128062 128136 75 Locate
rrn5 gene − 128380 128500 121 Locate
rrn4.5 gene − 128761 128863 103 Locate
rrn23 gene − 128962 131772 2811 Locate
trnA-UGC gene − 131931 132809 879 Locate
trnI gene − 132879 133896 1018 Locate
rrn16 gene − 134195 135685 1491 Locate
trnV-GAC gene − 135912 135983 72 Locate
rps12 gene + 137573 138366 794 Locate
rps7 gene + 138420 138887 468 Locate
ndhB gene + 139153 141360 2208 Locate
trnL-CAA gene + 141920 142002 83 Locate
ycf2 gene − 142587 149408 6822 Locate
trnM-CAU gene + 149517 149591 75 Locate
rpl23 gene + 149756 150037 282 Locate
rpl2 gene + 150056 151545 1490 Locate
rps19 gene + 151605 151647 43 Locate
Status Available
Accession PP165049.1
Length 151,647 bp
GC content 38.0%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 13 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources