Isodon excisus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_067780.1 · 11–84 bp · −
psbA · NC_067780.1 · 393–1,451 bp · −
trnK-UUU · NC_067780.1 · 1,682–4,263 bp · −
matK · NC_067780.1 · 2,003–3,523 bp · −
rps16 · NC_067780.1 · 4,788–5,933 bp · −
trnQ-UUG · NC_067780.1 · 6,878–6,949 bp · −
trnS-GCU · NC_067780.1 · 8,182–8,269 bp · −
atpA · NC_067780.1 · 10,157–11,680 bp · −
atpF · NC_067780.1 · 11,792–13,044 bp · −
atpH · NC_067780.1 · 13,336–13,581 bp · −
atpI · NC_067780.1 · 14,583–15,326 bp · −
rps2 · NC_067780.1 · 15,552–16,262 bp · −
rpoC2 · NC_067780.1 · 16,478–20,611 bp · −
rpoC1 · NC_067780.1 · 20,788–23,621 bp · −
rpoB · NC_067780.1 · 23,648–26,860 bp · −
psbM · NC_067780.1 · 29,365–29,469 bp · −
trnD-GUC · NC_067780.1 · 29,988–30,061 bp · −
trnY-GUA · NC_067780.1 · 30,172–30,255 bp · −
trnE-UUC · NC_067780.1 · 30,333–30,405 bp · −
trnS-UGA · NC_067780.1 · 35,071–35,163 bp · −
trnM-CAU · NC_067780.1 · 36,198–36,271 bp · −
rps14 · NC_067780.1 · 36,417–36,719 bp · −
psaB · NC_067780.1 · 36,842–39,046 bp · −
psaA · NC_067780.1 · 39,072–41,324 bp · −
ycf3 · NC_067780.1 · 42,097–44,044 bp · −
rps4 · NC_067780.1 · 45,291–45,896 bp · −
trnT-UGU · NC_067780.1 · 46,310–46,382 bp · −
ndhJ · NC_067780.1 · 48,666–49,142 bp · −
ndhK · NC_067780.1 · 49,253–49,930 bp · −
ndhC · NC_067780.1 · 49,982–50,344 bp · −
atpE · NC_067780.1 · 52,417–52,818 bp · −
atpB · NC_067780.1 · 52,815–54,311 bp · −
psbJ · NC_067780.1 · 64,028–64,150 bp · −
psbL · NC_067780.1 · 64,285–64,401 bp · −
psbF · NC_067780.1 · 64,425–64,544 bp · −
psbE · NC_067780.1 · 64,559–64,810 bp · −
trnW-CCA · NC_067780.1 · 66,209–66,282 bp · −
trnP-UGG · NC_067780.1 · 66,451–66,524 bp · −
rpl20 · NC_067780.1 · 68,309–68,695 bp · −
rps12 · NC_067780.1 · 69,427–69,540 bp · −
rps12 · NC_067780.1 · 96,835–97,627 bp · −
clpP · NC_067780.1 · 69,659–71,573 bp · −
psbN · NC_067780.1 · 73,923–74,054 bp · −
rpoA · NC_067780.1 · 77,428–78,435 bp · −
rps11 · NC_067780.1 · 78,507–78,923 bp · −
rpl36 · NC_067780.1 · 79,039–79,152 bp · −
infA · NC_067780.1 · 79,248–79,481 bp · −
rps8 · NC_067780.1 · 79,608–80,012 bp · −
rpl14 · NC_067780.1 · 80,195–80,563 bp · −
rpl16 · NC_067780.1 · 80,697–81,964 bp · −
rps3 · NC_067780.1 · 82,108–82,770 bp · −
rpl22 · NC_067780.1 · 82,755–83,228 bp · −
rps19 · NC_067780.1 · 83,293–83,574 bp · −
rpl2 · NC_067780.1 · 83,642–85,120 bp · −
rpl23 · NC_067780.1 · 85,139–85,420 bp · −
trnI-CAU · NC_067780.1 · 85,586–85,659 bp · −
trnL-CAA · NC_067780.1 · 93,184–93,264 bp · −
ndhB · NC_067780.1 · 93,836–96,043 bp · −
rps7 · NC_067780.1 · 96,314–96,781 bp · −
rrn4.5 · NC_067780.1 · 106,423–106,687 bp · −
trnN-GUU · NC_067780.1 · 107,781–107,852 bp · −
ndhF · NC_067780.1 · 109,218–111,449 bp · −
ndhD · NC_067780.1 · 114,219–115,748 bp · −
psaC · NC_067780.1 · 115,839–116,084 bp · −
ndhE · NC_067780.1 · 116,340–116,645 bp · −
ndhG · NC_067780.1 · 116,860–117,390 bp · −
ndhI · NC_067780.1 · 117,749–118,255 bp · −
ndhA · NC_067780.1 · 118,336–120,459 bp · −
ndhH · NC_067780.1 · 120,461–121,642 bp · −
rps15 · NC_067780.1 · 121,757–122,029 bp · −
ycf1 · NC_067780.1 · 122,459–127,981 bp · −
trnR-ACG · NC_067780.1 · 128,957–129,030 bp · −
rrn5 · NC_067780.1 · 129,264–129,394 bp · −
rrn23 · NC_067780.1 · 129,851–132,661 bp · −
trnA-UGC · NC_067780.1 · 132,833–133,711 bp · −
trnI-GAU · NC_067780.1 · 133,776–134,794 bp · −
rrn16 · NC_067780.1 · 135,092–136,582 bp · −
trnV-GAC · NC_067780.1 · 136,809–136,880 bp · −
ycf15 · NC_067780.1 · 143,252–143,401 bp · −
ycf2 · NC_067780.1 · 143,591–150,421 bp · −
psbK · NC_067780.1 · 7,343–7,528 bp · +
psbI · NC_067780.1 · 7,916–8,026 bp · +
trnT-CGU · NC_067780.1 · 9,031–9,791 bp · +
trnR-UCU · NC_067780.1 · 9,982–10,053 bp · +
trnC-GCA · NC_067780.1 · 28,050–28,120 bp · +
petN · NC_067780.1 · 28,283–28,372 bp · +
trnT-GGU · NC_067780.1 · 31,015–31,086 bp · +
psbD · NC_067780.1 · 32,404–33,465 bp · +
psbC · NC_067780.1 · 33,413–34,834 bp · +
psbZ · NC_067780.1 · 35,504–35,692 bp · +
trnG-GCC · NC_067780.1 · 35,937–36,007 bp · +
trnS-GGA · NC_067780.1 · 44,908–44,994 bp · +
trnL-UAA · NC_067780.1 · 47,068–47,632 bp · +
trnF-GAA · NC_067780.1 · 47,926–47,998 bp · +
trnM-CAU · NC_067780.1 · 52,144–52,216 bp · +
rbcL · NC_067780.1 · 55,082–56,536 bp · +
accD · NC_067780.1 · 57,172–58,722 bp · +
psaI · NC_067780.1 · 59,422–59,532 bp · +
ycf4 · NC_067780.1 · 59,979–60,533 bp · +
cemA · NC_067780.1 · 61,124–61,813 bp · +
petA · NC_067780.1 · 62,028–62,990 bp · +
petL · NC_067780.1 · 65,703–65,798 bp · +
petG · NC_067780.1 · 65,973–66,086 bp · +
psaJ · NC_067780.1 · 66,806–66,940 bp · +
rpl33 · NC_067780.1 · 67,402–67,602 bp · +
rps18 · NC_067780.1 · 67,769–68,074 bp · +
rps12 · NC_067780.1 · 138,548–139,340 bp · +
psbB · NC_067780.1 · 72,046–73,572 bp · +
psbT · NC_067780.1 · 73,756–73,857 bp · +
psbH · NC_067780.1 · 74,160–74,378 bp · +
petB · NC_067780.1 · 74,504–75,870 bp · +
petD · NC_067780.1 · 76,059–77,251 bp · +
ycf2 · NC_067780.1 · 85,754–92,584 bp · +
ycf15 · NC_067780.1 · 92,774–92,923 bp · +
trnV-GAC · NC_067780.1 · 99,295–99,366 bp · +
rrn16 · NC_067780.1 · 99,593–101,083 bp · +
trnI-GAU · NC_067780.1 · 101,381–102,399 bp · +
trnA-UGC · NC_067780.1 · 102,464–103,342 bp · +
rrn23 · NC_067780.1 · 103,514–106,324 bp · +
rrn5 · NC_067780.1 · 106,781–106,911 bp · +
trnR-ACG · NC_067780.1 · 107,145–107,218 bp · +
ycf1 · NC_067780.1 · 108,194–109,324 bp · +
rpl32 · NC_067780.1 · 111,917–112,087 bp · +
trnL-UAG · NC_067780.1 · 112,847–112,926 bp · +
ccsA · NC_067780.1 · 113,015–113,986 bp · +
trnN-GUU · NC_067780.1 · 128,323–128,394 bp · +
rrn4.5 · NC_067780.1 · 129,488–129,752 bp · +
rps7 · NC_067780.1 · 139,394–139,861 bp · +
ndhB · NC_067780.1 · 140,132–142,339 bp · +
trnL-CAA · NC_067780.1 · 142,911–142,991 bp · +
trnI-CAU · NC_067780.1 · 150,516–150,589 bp · +
rpl23 · NC_067780.1 · 150,755–151,036 bp · +
rpl2 · NC_067780.1 · 151,055–152,533 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Isodon excisus
ANNOTATED PLASTOME
NC_067780.1
152,643 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38161 76322 114482 152643 bp
Forward strand 5′ → 3′
psbK psbI trnT-CGU trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rrn4.5 rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 rrn4.5 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1682 4263 2582 Locate
matK gene − 2003 3523 1521 Locate
rps16 gene − 4788 5933 1146 Locate
trnQ-UUG gene − 6878 6949 72 Locate
psbK gene + 7343 7528 186 Locate
psbI gene + 7916 8026 111 Locate
trnS-GCU gene − 8182 8269 88 Locate
trnT-CGU gene + 9031 9791 761 Locate
trnR-UCU gene + 9982 10053 72 Locate
atpA gene − 10157 11680 1524 Locate
atpF gene − 11792 13044 1253 Locate
atpH gene − 13336 13581 246 Locate
atpI gene − 14583 15326 744 Locate
rps2 gene − 15552 16262 711 Locate
rpoC2 gene − 16478 20611 4134 Locate
rpoC1 gene − 20788 23621 2834 Locate
rpoB gene − 23648 26860 3213 Locate
trnC-GCA gene + 28050 28120 71 Locate
petN gene + 28283 28372 90 Locate
psbM gene − 29365 29469 105 Locate
trnD-GUC gene − 29988 30061 74 Locate
trnY-GUA gene − 30172 30255 84 Locate
trnE-UUC gene − 30333 30405 73 Locate
trnT-GGU gene + 31015 31086 72 Locate
psbD gene + 32404 33465 1062 Locate
psbC gene + 33413 34834 1422 Locate
trnS-UGA gene − 35071 35163 93 Locate
psbZ gene + 35504 35692 189 Locate
trnG-GCC gene + 35937 36007 71 Locate
trnM-CAU gene − 36198 36271 74 Locate
rps14 gene − 36417 36719 303 Locate
psaB gene − 36842 39046 2205 Locate
psaA gene − 39072 41324 2253 Locate
ycf3 gene − 42097 44044 1948 Locate
trnS-GGA gene + 44908 44994 87 Locate
rps4 gene − 45291 45896 606 Locate
trnT-UGU gene − 46310 46382 73 Locate
trnL-UAA gene + 47068 47632 565 Locate
trnF-GAA gene + 47926 47998 73 Locate
ndhJ gene − 48666 49142 477 Locate
ndhK gene − 49253 49930 678 Locate
ndhC gene − 49982 50344 363 Locate
trnM-CAU gene + 52144 52216 73 Locate
atpE gene − 52417 52818 402 Locate
atpB gene − 52815 54311 1497 Locate
rbcL gene + 55082 56536 1455 Locate
accD gene + 57172 58722 1551 Locate
psaI gene + 59422 59532 111 Locate
ycf4 gene + 59979 60533 555 Locate
cemA gene + 61124 61813 690 Locate
petA gene + 62028 62990 963 Locate
psbJ gene − 64028 64150 123 Locate
psbL gene − 64285 64401 117 Locate
psbF gene − 64425 64544 120 Locate
psbE gene − 64559 64810 252 Locate
petL gene + 65703 65798 96 Locate
petG gene + 65973 66086 114 Locate
trnW-CCA gene − 66209 66282 74 Locate
trnP-UGG gene − 66451 66524 74 Locate
psaJ gene + 66806 66940 135 Locate
rpl33 gene + 67402 67602 201 Locate
rps18 gene + 67769 68074 306 Locate
rpl20 gene − 68309 68695 387 Locate
rps12 gene − 69427 69540 114 Locate
clpP gene − 69659 71573 1915 Locate
psbB gene + 72046 73572 1527 Locate
psbT gene + 73756 73857 102 Locate
psbN gene − 73923 74054 132 Locate
psbH gene + 74160 74378 219 Locate
petB gene + 74504 75870 1367 Locate
petD gene + 76059 77251 1193 Locate
rpoA gene − 77428 78435 1008 Locate
rps11 gene − 78507 78923 417 Locate
rpl36 gene − 79039 79152 114 Locate
infA gene − 79248 79481 234 Locate
rps8 gene − 79608 80012 405 Locate
rpl14 gene − 80195 80563 369 Locate
rpl16 gene − 80697 81964 1268 Locate
rps3 gene − 82108 82770 663 Locate
rpl22 gene − 82755 83228 474 Locate
rps19 gene − 83293 83574 282 Locate
rpl2 gene − 83642 85120 1479 Locate
rpl23 gene − 85139 85420 282 Locate
trnI-CAU gene − 85586 85659 74 Locate
ycf2 gene + 85754 92584 6831 Locate
ycf15 gene + 92774 92923 150 Locate
trnL-CAA gene − 93184 93264 81 Locate
ndhB gene − 93836 96043 2208 Locate
rps7 gene − 96314 96781 468 Locate
rps12 gene − 96835 97627 793 Locate
trnV-GAC gene + 99295 99366 72 Locate
rrn16 gene + 99593 101083 1491 Locate
trnI-GAU gene + 101381 102399 1019 Locate
trnA-UGC gene + 102464 103342 879 Locate
rrn23 gene + 103514 106324 2811 Locate
rrn4.5 gene − 106423 106687 265 Locate
rrn5 gene + 106781 106911 131 Locate
trnR-ACG gene + 107145 107218 74 Locate
trnN-GUU gene − 107781 107852 72 Locate
ycf1 gene + 108194 109324 1131 Locate
ndhF gene − 109218 111449 2232 Locate
rpl32 gene + 111917 112087 171 Locate
trnL-UAG gene + 112847 112926 80 Locate
ccsA gene + 113015 113986 972 Locate
ndhD gene − 114219 115748 1530 Locate
psaC gene − 115839 116084 246 Locate
ndhE gene − 116340 116645 306 Locate
ndhG gene − 116860 117390 531 Locate
ndhI gene − 117749 118255 507 Locate
ndhA gene − 118336 120459 2124 Locate
ndhH gene − 120461 121642 1182 Locate
rps15 gene − 121757 122029 273 Locate
ycf1 gene − 122459 127981 5523 Locate
trnN-GUU gene + 128323 128394 72 Locate
trnR-ACG gene − 128957 129030 74 Locate
rrn5 gene − 129264 129394 131 Locate
rrn4.5 gene + 129488 129752 265 Locate
rrn23 gene − 129851 132661 2811 Locate
trnA-UGC gene − 132833 133711 879 Locate
trnI-GAU gene − 133776 134794 1019 Locate
rrn16 gene − 135092 136582 1491 Locate
trnV-GAC gene − 136809 136880 72 Locate
rps12 gene + 138548 139340 793 Locate
rps7 gene + 139394 139861 468 Locate
ndhB gene + 140132 142339 2208 Locate
trnL-CAA gene + 142911 142991 81 Locate
ycf15 gene − 143252 143401 150 Locate
ycf2 gene − 143591 150421 6831 Locate
trnI-CAU gene + 150516 150589 74 Locate
rpl23 gene + 150755 151036 282 Locate
rpl2 gene + 151055 152533 1479 Locate
Status Available
Accession NC_067780.1
Length 152,643 bp
GC content 37.6%
Annotated genes 132
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources